Clone Name | rbasd11f19 |
---|---|
Clone Library Name | barley_pub |
>gb|AY103901.1| Zea mays PCO142939 mRNA sequence Length = 1490 Score = 133 bits (67), Expect = 6e-28 Identities = 202/247 (81%) Strand = Plus / Minus Query: 279 aggttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgag 338 ||||||||||||||| ||||| | ||||| | | ||||| ||||||||| |||| || Sbjct: 1343 aggttggggagggcgaccagccggagcttatccatctcgcttgccgtcaccctgcaggac 1284 Query: 339 tcgagcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgac 398 || || || || |||||||||||||||||||| |||| ||||||||||| | ||| || Sbjct: 1283 tccagggatagggagcgcaggttctgcagcggtttcaggtggtggaggcccgagttggag 1224 Query: 399 acccgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaag 458 ||||| |||| |||| ||||| ||| || | | |||||||| ||||| | ||||| | Sbjct: 1223 acccgggagttggacacgttcaacgacactagcgcagtcaggccggagatcagctccagg 1164 Query: 459 gtcttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtcc 518 || ||||| ||||| ||||||||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 1163 gttttgtccgtgagcttgccgttttgagataggttgagcaacgtcagagctttcaggtcc 1104 Query: 519 ttgatgt 525 ||||||| Sbjct: 1103 ttgatgt 1097
>ref|XM_473075.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 107 bits (54), Expect = 4e-20 Identities = 195/242 (80%) Strand = Plus / Minus Query: 282 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 1721 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1662 Query: 342 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1661 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1602 Query: 402 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| |||| Sbjct: 1601 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 1542 Query: 462 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 1541 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1482 Query: 522 at 523 || Sbjct: 1481 at 1480
>dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F06, full insert sequence Length = 1431 Score = 107 bits (54), Expect = 4e-20 Identities = 195/242 (80%) Strand = Plus / Minus Query: 282 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 1097 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1038 Query: 342 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1037 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 978 Query: 402 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| |||| Sbjct: 977 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 918 Query: 462 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 917 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 858 Query: 522 at 523 || Sbjct: 857 at 856 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Minus Query: 39 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 1378 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 1331
>dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H05, full insert sequence Length = 2375 Score = 107 bits (54), Expect = 4e-20 Identities = 195/242 (80%) Strand = Plus / Minus Query: 282 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 2032 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1973 Query: 342 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1972 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1913 Query: 402 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| |||| Sbjct: 1912 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 1853 Query: 462 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 1852 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1793 Query: 522 at 523 || Sbjct: 1792 at 1791 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Minus Query: 39 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 2313 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 2266
>dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060B12, full insert sequence Length = 2265 Score = 99.6 bits (50), Expect = 9e-18 Identities = 194/242 (80%) Strand = Plus / Minus Query: 282 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 1926 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1867 Query: 342 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 1866 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1807 Query: 402 cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461 ||||||| ||||| |||||| |||||||| | || |||| || || | ||| || | Sbjct: 1806 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaatgat 1747 Query: 462 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 1746 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1687 Query: 522 at 523 || Sbjct: 1686 at 1685 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Minus Query: 39 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 2207 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 2160
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 73.8 bits (37), Expect = 5e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 282 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 25102330 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 25102389 Query: 342 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 25102390 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 25102449 Query: 402 cgagagtacgacaggttcagcgagaccaa 430 ||||||| ||||| |||||| |||||||| Sbjct: 25102450 cgagagttcgacacgttcagggagaccaa 25102478 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 462 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 25102591 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 25102650 Query: 522 at 523 || Sbjct: 25102651 at 25102652 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 39 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 25102049 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 25102096
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 73.8 bits (37), Expect = 5e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 282 ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341 ||||| ||||| |||| ||| |||||||||| ||| || ||||||||||| || || Sbjct: 49757 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 49816 Query: 342 agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401 || |||| || | ||||||||| || ||| ||||||||||||| || | ||||||||| Sbjct: 49817 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 49876 Query: 402 cgagagtacgacaggttcagcgagaccaa 430 ||||||| ||||| |||||| |||||||| Sbjct: 49877 cgagagttcgacacgttcagggagaccaa 49905 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 462 ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521 ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| ||| Sbjct: 50018 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 50077 Query: 522 at 523 || Sbjct: 50078 at 50079 Score = 48.1 bits (24), Expect = 0.029 Identities = 42/48 (87%) Strand = Plus / Plus Query: 39 aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86 |||||| ||||||||||| | ||||||||||||| |||| ||||||| Sbjct: 49476 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 49523
>ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA Length = 2521 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 2013
>ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA Length = 2538 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1970
>ref|XM_466700.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2507 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1919
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Plus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 24186714 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 24186773 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 24186774 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 24186824
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Plus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 145455 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 145514 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 145515 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 145565
>dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J20, full insert sequence Length = 2522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 2013
>dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H15, full insert sequence Length = 2538 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1970
>dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I18, full insert sequence Length = 2507 Score = 54.0 bits (27), Expect = 5e-04 Identities = 90/111 (81%) Strand = Plus / Minus Query: 257 ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316 |||||| || || ||||||| |||||||||||| | | | ||| |||||||| ||||| Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970 Query: 317 gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367 | | ||| ||| |||| || || |||||||||||||||||||||||||| Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1919
>ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3582 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 tgcagcggcctcagatggtg 382 |||||||||||||||||||| Sbjct: 1671 tgcagcggcctcagatggtg 1652
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gtcgagcgacagcgagcgca 357 |||||||||||||||||||| Sbjct: 1736506 gtcgagcgacagcgagcgca 1736525
>ref|XM_777900.1| PREDICTED: Strongylocentrotus purpuratus similar to dentin sialophosphoprotein preproprotein (LOC577686), mRNA Length = 3507 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 accggaagactactccggac 267 |||||||||||||||||||| Sbjct: 3236 accggaagactactccggac 3255
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gtcgagcgacagcgagcgca 357 |||||||||||||||||||| Sbjct: 3071383 gtcgagcgacagcgagcgca 3071402
>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181831 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 gcccgagattatctccaagg 459 |||||||||||||||||||| Sbjct: 52419 gcccgagattatctccaagg 52400
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tcagtctatcatcagatcaa 143 |||||||||||||||||||| Sbjct: 2288964 tcagtctatcatcagatcaa 2288983
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gtcgagcgacagcgagcgca 357 |||||||||||||||||||| Sbjct: 2220100 gtcgagcgacagcgagcgca 2220119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 tgcagcggcctcagatggtg 382 |||||||||||||||||||| Sbjct: 11028293 tgcagcggcctcagatggtg 11028312
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 tgcagcggcctcagatggtg 382 |||||||||||||||||||| Sbjct: 57175 tgcagcggcctcagatggtg 57194
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 tgcagcggcctcagatggtg 382 |||||||||||||||||||| Sbjct: 131135 tgcagcggcctcagatggtg 131154
>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete sequence Length = 326403 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 gcccgagattatctccaagg 459 |||||||||||||||||||| Sbjct: 212973 gcccgagattatctccaagg 212954
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gtcgagcgacagcgagcgca 357 |||||||||||||||||||| Sbjct: 2838928 gtcgagcgacagcgagcgca 2838947 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,985,590 Number of Sequences: 3902068 Number of extensions: 2985590 Number of successful extensions: 48945 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48710 Number of HSP's gapped (non-prelim): 233 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)