ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11f19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103901.1| Zea mays PCO142939 mRNA sequence 133 6e-28
2ref|XM_473075.1| Oryza sativa (japonica cultivar-group), predic... 107 4e-20
3dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
4dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
5dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 9e-18
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
7emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 74 5e-10
8ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 5e-04
9ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 5e-04
10ref|XM_466700.1| Oryza sativa (japonica cultivar-group), mRNA 54 5e-04
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
12dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
13dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
14dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
15dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
16ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predic... 40 7.1
17gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.1
18ref|XM_777900.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.1
19emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.1
20gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell... 40 7.1
21dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 7.1
22gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.1
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
24dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
25dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
26gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 ... 40 7.1
27gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 7.1

>gb|AY103901.1| Zea mays PCO142939 mRNA sequence
          Length = 1490

 Score =  133 bits (67), Expect = 6e-28
 Identities = 202/247 (81%)
 Strand = Plus / Minus

                                                                        
Query: 279  aggttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgag 338
            ||||||||||||||| ||||| | ||||| |  | |||||  ||||||||| |||| || 
Sbjct: 1343 aggttggggagggcgaccagccggagcttatccatctcgcttgccgtcaccctgcaggac 1284

                                                                        
Query: 339  tcgagcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgac 398
            || || || || ||||||||||||||||||||  |||| ||||||||||| | ||| || 
Sbjct: 1283 tccagggatagggagcgcaggttctgcagcggtttcaggtggtggaggcccgagttggag 1224

                                                                        
Query: 399  acccgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaag 458
            ||||| ||||  |||| ||||| ||| || |  |  |||||||| ||||| | ||||| |
Sbjct: 1223 acccgggagttggacacgttcaacgacactagcgcagtcaggccggagatcagctccagg 1164

                                                                        
Query: 459  gtcttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtcc 518
            || ||||| ||||| ||||||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct: 1163 gttttgtccgtgagcttgccgttttgagataggttgagcaacgtcagagctttcaggtcc 1104

                   
Query: 519  ttgatgt 525
            |||||||
Sbjct: 1103 ttgatgt 1097



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>ref|XM_473075.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1746

 Score =  107 bits (54), Expect = 4e-20
 Identities = 195/242 (80%)
 Strand = Plus / Minus

                                                                        
Query: 282  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 1721 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1662

                                                                        
Query: 342  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1661 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1602

                                                                        
Query: 402  cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461
            ||||||| ||||| |||||| |||||||| |  || ||||  || || | ||| ||||  
Sbjct: 1601 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 1542

                                                                        
Query: 462  ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521
            ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| |||
Sbjct: 1541 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1482

              
Query: 522  at 523
            ||
Sbjct: 1481 at 1480



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>dbj|AK105091.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F06, full
            insert sequence
          Length = 1431

 Score =  107 bits (54), Expect = 4e-20
 Identities = 195/242 (80%)
 Strand = Plus / Minus

                                                                        
Query: 282  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 1097 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1038

                                                                        
Query: 342  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1037 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 978

                                                                        
Query: 402  cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461
            ||||||| ||||| |||||| |||||||| |  || ||||  || || | ||| ||||  
Sbjct: 977  cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 918

                                                                        
Query: 462  ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521
            ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| |||
Sbjct: 917  ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 858

              
Query: 522  at 523
            ||
Sbjct: 857  at 856



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 39   aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86
            |||||| ||||||||||| |  ||||||||||||| |||| |||||||
Sbjct: 1378 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 1331



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>dbj|AK099404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H05, full
            insert sequence
          Length = 2375

 Score =  107 bits (54), Expect = 4e-20
 Identities = 195/242 (80%)
 Strand = Plus / Minus

                                                                        
Query: 282  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 2032 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1973

                                                                        
Query: 342  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1972 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1913

                                                                        
Query: 402  cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461
            ||||||| ||||| |||||| |||||||| |  || ||||  || || | ||| ||||  
Sbjct: 1912 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaaggat 1853

                                                                        
Query: 462  ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521
            ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| |||
Sbjct: 1852 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1793

              
Query: 522  at 523
            ||
Sbjct: 1792 at 1791



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 39   aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86
            |||||| ||||||||||| |  ||||||||||||| |||| |||||||
Sbjct: 2313 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 2266



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>dbj|AK101695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060B12, full
            insert sequence
          Length = 2265

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 194/242 (80%)
 Strand = Plus / Minus

                                                                        
Query: 282  ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341
            ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 1926 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 1867

                                                                        
Query: 342  agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401
            || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 1866 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 1807

                                                                        
Query: 402  cgagagtacgacaggttcagcgagaccaaagacgtcaggcccgagattatctccaaggtc 461
            ||||||| ||||| |||||| |||||||| |  || ||||  || || | ||| || |  
Sbjct: 1806 cgagagttcgacacgttcagggagaccaaggcagtgaggcgggaaatcagctctaatgat 1747

                                                                        
Query: 462  ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521
            ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| |||
Sbjct: 1746 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 1687

              
Query: 522  at 523
            ||
Sbjct: 1686 at 1685



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 39   aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86
            |||||| ||||||||||| |  ||||||||||||| |||| |||||||
Sbjct: 2207 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 2160



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 121/149 (81%)
 Strand = Plus / Plus

                                                                            
Query: 282      ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341
                ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 25102330 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 25102389

                                                                            
Query: 342      agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401
                || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 25102390 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 25102449

                                             
Query: 402      cgagagtacgacaggttcagcgagaccaa 430
                ||||||| ||||| |||||| ||||||||
Sbjct: 25102450 cgagagttcgacacgttcagggagaccaa 25102478



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                            
Query: 462      ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521
                ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| |||
Sbjct: 25102591 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 25102650

                  
Query: 522      at 523
                ||
Sbjct: 25102651 at 25102652



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 39       aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86
                |||||| ||||||||||| |  ||||||||||||| |||| |||||||
Sbjct: 25102049 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 25102096



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>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14,
             complete sequence
          Length = 150187

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 121/149 (81%)
 Strand = Plus / Plus

                                                                         
Query: 282   ttggggagggcggccagctgaagcttcttgacctcgcaggccgtcaccttgcacgagtcg 341
             ||||| ||||| |||| ||| |||||||||| |||    || ||||||||||| || || 
Sbjct: 49757 ttgggcagggcagccaactggagcttcttgatctcaatcgcggtcaccttgcaggactcc 49816

                                                                         
Query: 342   agcgacagcgagcgcaggttctgcagcggcctcagatggtggaggcctgcgttcgacacc 401
             || ||||  || | ||||||||| || ||| ||||||||||||| || |  |||||||||
Sbjct: 49817 agagacaaggacctcaggttctggagtggcttcagatggtggagcccagaattcgacacc 49876

                                          
Query: 402   cgagagtacgacaggttcagcgagaccaa 430
             ||||||| ||||| |||||| ||||||||
Sbjct: 49877 cgagagttcgacacgttcagggagaccaa 49905



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 462   ttgtctgtgaggttgccgttttgggataggttcagcaacgtcagggctttgaggtccttg 521
             ||||| ||||||||||| ||||| |||||||| |||| |||||| ||||||||||| |||
Sbjct: 50018 ttgtcagtgaggttgccattttgagataggttaagcagcgtcagagctttgaggtctttg 50077

               
Query: 522   at 523
             ||
Sbjct: 50078 at 50079



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 39    aaatgcggaggaagcacgacgcatttacagttgtttcttcgcatcagc 86
             |||||| ||||||||||| |  ||||||||||||| |||| |||||||
Sbjct: 49476 aaatgcagaggaagcacgccatatttacagttgttccttcccatcagc 49523



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>ref|XM_507496.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA
          Length = 2521

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064

                                                               
Query: 317  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 2013



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>ref|XM_506866.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1004_A05.39 mRNA
          Length = 2538

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021

                                                               
Query: 317  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1970



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>ref|XM_466700.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2507

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970

                                                               
Query: 317  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1919



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                            
Query: 257      ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
                |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 24186714 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 24186773

                                                                   
Query: 317      gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
                 |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 24186774 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 24186824



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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A05
          Length = 174290

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Plus

                                                                          
Query: 257    ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
              |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 145455 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 145514

                                                                 
Query: 317    gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
               |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 145515 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 145565



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>dbj|AK098974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J20, full
            insert sequence
          Length = 2522

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2123 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2064

                                                               
Query: 317  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2063 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 2013



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>dbj|AK098853.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H15, full
            insert sequence
          Length = 2538

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2080 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 2021

                                                               
Query: 317  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 2020 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1970



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>dbj|AK065051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I18, full
            insert sequence
          Length = 2507

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 90/111 (81%)
 Strand = Plus / Minus

                                                                        
Query: 257  ctactccggacgcacgcttaccaggttggggagggcggccagctgaagcttcttgacctc 316
            |||||| || || ||||||| ||||||||||||  | | |  ||| |||||||| |||||
Sbjct: 2029 ctactcgggtcgaacgcttatcaggttggggagcaccgtcgcctgcagcttcttcacctc 1970

                                                               
Query: 317  gcaggccgtcaccttgcacgagtcgagcgacagcgagcgcaggttctgcag 367
             |  | ||| ||| |||| || || ||||||||||||||||||||||||||
Sbjct: 1969 acttgtcgtgaccctgcaggaatcaagcgacagcgagcgcaggttctgcag 1919



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>ref|NM_189191.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3582

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 363  tgcagcggcctcagatggtg 382
            ||||||||||||||||||||
Sbjct: 1671 tgcagcggcctcagatggtg 1652



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     gtcgagcgacagcgagcgca 357
               ||||||||||||||||||||
Sbjct: 1736506 gtcgagcgacagcgagcgca 1736525



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>ref|XM_777900.1| PREDICTED: Strongylocentrotus purpuratus similar to dentin
            sialophosphoprotein preproprotein (LOC577686), mRNA
          Length = 3507

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  accggaagactactccggac 267
            ||||||||||||||||||||
Sbjct: 3236 accggaagactactccggac 3255



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     gtcgagcgacagcgagcgca 357
               ||||||||||||||||||||
Sbjct: 3071383 gtcgagcgacagcgagcgca 3071402



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>gb|AC107403.6| Drosophila melanogaster X BAC RP98-21M21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181831

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   gcccgagattatctccaagg 459
             ||||||||||||||||||||
Sbjct: 52419 gcccgagattatctccaagg 52400



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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     tcagtctatcatcagatcaa 143
               ||||||||||||||||||||
Sbjct: 2288964 tcagtctatcatcagatcaa 2288983



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     gtcgagcgacagcgagcgca 357
               ||||||||||||||||||||
Sbjct: 2220100 gtcgagcgacagcgagcgca 2220119



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 363      tgcagcggcctcagatggtg 382
                ||||||||||||||||||||
Sbjct: 11028293 tgcagcggcctcagatggtg 11028312



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>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0682B08
          Length = 138376

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   tgcagcggcctcagatggtg 382
             ||||||||||||||||||||
Sbjct: 57175 tgcagcggcctcagatggtg 57194



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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487H02
          Length = 145491

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    tgcagcggcctcagatggtg 382
              ||||||||||||||||||||
Sbjct: 131135 tgcagcggcctcagatggtg 131154



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>gb|AE003429.4| Drosophila melanogaster chromosome X, section 13 of 74 of the complete
              sequence
          Length = 326403

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 440    gcccgagattatctccaagg 459
              ||||||||||||||||||||
Sbjct: 212973 gcccgagattatctccaagg 212954



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 338     gtcgagcgacagcgagcgca 357
               ||||||||||||||||||||
Sbjct: 2838928 gtcgagcgacagcgagcgca 2838947


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,985,590
Number of Sequences: 3902068
Number of extensions: 2985590
Number of successful extensions: 48945
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48710
Number of HSP's gapped (non-prelim): 233
length of query: 525
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 502
effective length of database: 17,143,297,704
effective search space: 8605935447408
effective search space used: 8605935447408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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