ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11f11 |
|---|---|
| Clone Library Name | barley_pub |
>RBP17_HUMAN (Q9H2T7) Ran-binding protein 17| Length = 1088 Score = 90.5 bits (223), Expect = 4e-18 Identities = 41/72 (56%), Positives = 57/72 (79%) Frame = -2 Query: 621 NQWSLSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQCFDKLMTDVTRSLEPKNRD 442 NQWS+SRP+L LI+++E+ FS+LRA ++ SQP+ +Q+ L+QCF LM V ++L KNRD Sbjct: 997 NQWSVSRPLLGLILLNEKYFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRD 1056 Query: 441 RFTQNLTTFRHD 406 RFTQNL+ FR D Sbjct: 1057 RFTQNLSVFRRD 1068
>RBP17_MOUSE (Q99NF8) Ran-binding protein 17| Length = 1088 Score = 90.1 bits (222), Expect = 6e-18 Identities = 41/72 (56%), Positives = 56/72 (77%) Frame = -2 Query: 621 NQWSLSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQCFDKLMTDVTRSLEPKNRD 442 NQWS+SRP+L LI+++E+ FS+LRA ++ SQP+ +Q+ L QCF LM V ++L KNRD Sbjct: 997 NQWSVSRPLLGLILLNEKYFSELRASLINSQPLPKQEVLGQCFRNLMEGVEQNLSVKNRD 1056 Query: 441 RFTQNLTTFRHD 406 RFTQNL+ FR D Sbjct: 1057 RFTQNLSVFRRD 1068
>XPO7_MOUSE (Q9EPK7) Exportin-7 (Exp7) (Ran-binding protein 16)| Length = 1086 Score = 88.6 bits (218), Expect = 2e-17 Identities = 40/72 (55%), Positives = 55/72 (76%) Frame = -2 Query: 621 NQWSLSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQCFDKLMTDVTRSLEPKNRD 442 NQWS+SRP+L LI+++E+ FSDLR I+ SQP ++QQ + CF+ LM + R+L KNRD Sbjct: 996 NQWSMSRPLLGLILLNEKYFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRD 1055 Query: 441 RFTQNLTTFRHD 406 RFTQNL+ FR + Sbjct: 1056 RFTQNLSAFRRE 1067
>XPO7_HUMAN (Q9UIA9) Exportin-7 (Exp7) (Ran-binding protein 16)| Length = 1086 Score = 88.6 bits (218), Expect = 2e-17 Identities = 40/72 (55%), Positives = 55/72 (76%) Frame = -2 Query: 621 NQWSLSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQCFDKLMTDVTRSLEPKNRD 442 NQWS+SRP+L LI+++E+ FSDLR I+ SQP ++QQ + CF+ LM + R+L KNRD Sbjct: 996 NQWSMSRPLLGLILLNEKYFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRD 1055 Query: 441 RFTQNLTTFRHD 406 RFTQNL+ FR + Sbjct: 1056 RFTQNLSAFRRE 1067
>RBP16_DROME (Q9GQN0) Ran-binding protein 16| Length = 1098 Score = 81.6 bits (200), Expect = 2e-15 Identities = 33/72 (45%), Positives = 55/72 (76%) Frame = -2 Query: 621 NQWSLSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQCFDKLMTDVTRSLEPKNRD 442 NQWS+SRP+L LI++ E + L+ +I+ +QP+++QQ ++Q FD LM + R++ KN++ Sbjct: 995 NQWSMSRPLLVLILLYEDYYRSLKDRIICAQPIEKQQTMAQWFDDLMVGIERNVSSKNKE 1054 Query: 441 RFTQNLTTFRHD 406 +FTQN++TFR D Sbjct: 1055 KFTQNMSTFRRD 1066
>SYI_CHLPN (Q9Z972) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 1043 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +1 Query: 325 TSWYLQQCRSASFKLASNPDR---LSLRSEIMSECCEILSESVSVL 453 T+WY+++CR ++ PDR S E+++ C++++ V L Sbjct: 716 TNWYIRRCRRRFWEAEDTPDRRAAFSTLYEVLTVFCKVIAPFVPFL 761
>QUEA_STRPM (Q48SR6) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -2 Query: 669 DTEGHFLKSLSSRTRGNQWS-LSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQ-C 496 DT GH L T+G+QW L++P L + S+ F D R + ++ R+ + Sbjct: 74 DTHGHVELLLLKNTQGDQWEVLAKPAKRLKVGSQVNFGDGRLKATIIDELEHGGRIVEFS 133 Query: 495 FDKLMTDVTRSL 460 +D + +V SL Sbjct: 134 YDGIFLEVLESL 145
>QUEA_STRP8 (Q8P0D9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -2 Query: 669 DTEGHFLKSLSSRTRGNQWS-LSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQ-C 496 DT GH L T+G+QW L++P L + S+ F D R + ++ R+ + Sbjct: 74 DTHGHVELLLLKNTQGDQWEVLAKPAKRLKVGSQVNFGDGRLKATIIDELEHGGRIVEFS 133 Query: 495 FDKLMTDVTRSL 460 +D + +V SL Sbjct: 134 YDGIFLEVLESL 145
>QUEA_STRP6 (Q5XBG3) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -2 Query: 669 DTEGHFLKSLSSRTRGNQWS-LSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQ-C 496 DT GH L T+G+QW L++P L + S+ F D R + ++ R+ + Sbjct: 74 DTHGHVELLLLKNTQGDQWEVLAKPAKRLKVGSQVNFGDGRLKATIIDELEHGGRIVEFS 133 Query: 495 FDKLMTDVTRSL 460 +D + +V SL Sbjct: 134 YDGIFLEVLESL 145
>QUEA_STRP1 (Q99Z49) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -2 Query: 669 DTEGHFLKSLSSRTRGNQWS-LSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQ-C 496 DT GH L T+G+QW L++P L + S+ F D R + ++ R+ + Sbjct: 74 DTHGHVELLLLKNTQGDQWEVLAKPAKRLKVGSQVNFGDGRLKATIIDELEHGGRIVEFS 133 Query: 495 FDKLMTDVTRSL 460 +D + +V SL Sbjct: 134 YDGIFLEVLESL 145
>QUEA_STRT2 (Q5M5E8) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 347 Score = 30.4 bits (67), Expect = 5.4 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = -2 Query: 672 SDTEGHFLKSLSSRTRGNQWS-LSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQ- 499 +DT GH L T+G+QW L++P L + ++ F D R ++ +D R+ + Sbjct: 73 TDTHGHVEFLLLKNTQGDQWEVLAKPAKRLKVGAKVSFGDGRLTATVTEELDHGGRIVEF 132 Query: 498 CFDKLMTDVTRSL 460 ++ + +V SL Sbjct: 133 SYNGIFLEVLESL 145
>QUEA_STRA3 (Q8E611) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 342 Score = 29.6 bits (65), Expect = 9.3 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%) Frame = -2 Query: 669 DTEGHFLKSLSSRTRGNQWS-LSRPILSLIMISEQMFSDLRAQILASQPVDQQQRLSQ-C 496 DT GH L T G+QW L++P L + ++ F D R ++ ++ R+ + Sbjct: 74 DTHGHIELLLLKNTEGDQWEVLAKPAKRLRVGTKVSFGDGRLIATVTKELEHGGRIVEFS 133 Query: 495 FDKLMTDVTRSL 460 +D + +V SL Sbjct: 134 YDGIFLEVLESL 145 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,674,102 Number of Sequences: 219361 Number of extensions: 1435898 Number of successful extensions: 3143 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3063 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3143 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
