ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 72 2e-12
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 58 2e-08
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 54 4e-07
4APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 50 8e-06
5MT1_TETTH (Q8T6B3) Metallothionein-1 (MT-1) 34 0.37
6MT1_TETPI (P80394) Metallothionein-1 precursor (MT-1) [Contains:... 33 0.82
7MT1_TETPY (O97388) Metallothionein-1 precursor (MT-1) [Contains:... 33 1.1
8GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 32 1.4
9MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (C... 30 5.3
10MUTB_PORGI (Q59677) Methylmalonyl-CoA mutase large subunit (EC 5... 30 6.9
11POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP12... 30 9.1
12POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP12... 30 9.1
13POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP12... 30 9.1

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 72.0 bits (175), Expect = 2e-12
 Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
 Frame = -2

Query: 656 GCLRRYNRLAFHHNREXXXXXXXXXXKYPKTKIMYGDYFKAAMQFVVSPGKFGFSTALQA 477
           GC + YN +A H N +            P    ++ D +         P K GF   L  
Sbjct: 245 GCAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGFEFPLIT 304

Query: 476 CCGAGGSGAYNFNLKKKCGEA-----GASV----CSNPSAYVSWDGIHMTEAAYRMVANG 324
           CCG GG   YNF++   CG+      G  +    C+ PS  V+WDG H TEAA     + 
Sbjct: 305 CCGYGGK--YNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQ 362

Query: 323 WLNGPYASPPI 291
              G ++ PP+
Sbjct: 363 ISTGAFSDPPV 373



to top

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
 Frame = -2

Query: 686 SKKSDYNARTGCLRRYNRLAFHHNREXXXXXXXXXXKYPKTKIMYGDYFKAAMQFVVSPG 507
           +K SD+++  GC+   N LA   N               +  I Y D +    +  V   
Sbjct: 234 NKASDFDSH-GCVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQ 292

Query: 506 KFGFSTALQACCGAGGSGAYNFNLKKKCG----EAGASV-----CSNPSAYVSWDGIHMT 354
             GF  +L +CCG GG   YN+N    CG      G  V     C  P   V WDG+H T
Sbjct: 293 GHGFKGSLVSCCGHGGK--YNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFT 350

Query: 353 EAAYRMV 333
           +AA + +
Sbjct: 351 QAANKFI 357



to top

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
 Frame = -2

Query: 572 PKTKIMYGDYFKAAMQFVVSPGKFGFSTALQACCGAG--GSGAYNFNLKKKCGEAGASVC 399
           P +  +Y D +    Q + +P  +GF    + CC  G   +GA        C ++ + +C
Sbjct: 446 PNSTFVYMDIYTIISQMLETPAAYGFEETKKPCCKTGLLSAGAL-------CKKSTSKIC 498

Query: 398 SNPSAYVSWDGIHMTEAAYRMV 333
            N S+Y+ WDG+H T+ AY+ +
Sbjct: 499 PNTSSYLFWDGVHPTQRAYKTI 520



to top

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = -2

Query: 572 PKTKIMYGDYFKAAMQFVVSPGKFGFSTALQACCGAGGSGAYNFNLKKKCGEAGASVCSN 393
           P + I+YGD +    + + SP  +GF    + CC  G +    F     C E      SN
Sbjct: 363 PNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVF-----CKERTLKNMSN 417

Query: 392 PSAYVSWDGIHMTEAAYRM 336
            S+Y+ WDG+H ++ AY +
Sbjct: 418 ASSYLFWDGLHPSQRAYEI 436



to top

>MT1_TETTH (Q8T6B3) Metallothionein-1 (MT-1)|
          Length = 107

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 614 CCDGRPDGCIFGGTRCARCSQTSCCC 691
           CC G  +GC + G +C + +++ CCC
Sbjct: 42  CCTGTGEGCKWTGCKCCQPAKSGCCC 67



to top

>MT1_TETPI (P80394) Metallothionein-1 precursor (MT-1) [Contains:|
           Metallothionein-2 (MT-2)]
          Length = 107

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 614 CCDGRPDGCIFGGTRCARCSQTSCCC 691
           CC G  +GC   G +C + +++ CCC
Sbjct: 42  CCTGTGEGCKCTGCKCCQPAKSGCCC 67



to top

>MT1_TETPY (O97388) Metallothionein-1 precursor (MT-1) [Contains:|
           Metallothionein-2 (MT-2)]
          Length = 107

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 614 CCDGRPDGCIFGGTRCARCSQTSCCC 691
           CC G  +GC   G +C   +++ CCC
Sbjct: 42  CCTGTGEGCKCTGCKCCEPAKSGCCC 67



to top

>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 380 VSWDGIHMTEAAYRMVANGW 321
           +SWDG+H++E  Y  +AN W
Sbjct: 114 ISWDGLHLSEIGYTKIANIW 133



to top

>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)|
          Length = 162

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 614 CCDGRPDGCIFGGTRCARCSQTSCCC 691
           CC G  +GC     +C +  Q  CCC
Sbjct: 97  CCTGTGEGCKCTSCQCCKPVQQGCCC 122



to top

>MUTB_PORGI (Q59677) Methylmalonyl-CoA mutase large subunit (EC 5.4.99.2)|
           (MCM-alpha)
          Length = 715

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 518 VSPGKFGFSTALQACCGAGGSGAYNFNLKKKCGEAGASVCSNPSAYVSWDGIHMTEAAYR 339
           ++ G+ G S A       G    ++  +    G+AG S+CS     V +DGI +++ +  
Sbjct: 101 LASGQKGLSVAFDLATHRGYDADHS-RVVGDVGKAGVSICSLEDMKVLFDGIPLSKMSVS 159

Query: 338 MVANG 324
           M  NG
Sbjct: 160 MTMNG 164



to top

>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2492

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 460  PPAPQHACNAVLKPNFPGLTTNCI 531
            P     ACNA+LK NFP + + CI
Sbjct: 2002 PKVAVEACNAMLKENFPTVASYCI 2025



to top

>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2492

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 460  PPAPQHACNAVLKPNFPGLTTNCI 531
            P     ACNA+LK NFP + + CI
Sbjct: 2002 PKVAVEACNAMLKENFPTVASYCI 2025



to top

>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2485

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 460  PPAPQHACNAVLKPNFPGLTTNCI 531
            P     ACNA+LK NFP + + CI
Sbjct: 1995 PKVAVEACNAMLKENFPTVASYCI 2018


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,312,408
Number of Sequences: 219361
Number of extensions: 1382195
Number of successful extensions: 3700
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3693
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top