ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical pro... 48 0.034
2dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 46 0.13
3gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 46 0.13
4gb|DQ490515.1| Emericella nidulans alpha-galactosidase (AN8138-2... 42 2.1
5ref|XM_676315.1| Aspergillus nidulans FGSC A4 alpha-galactosidas... 42 2.1
6emb|CR683301.2|CNS0FQ6P Tetraodon nigroviridis full-length cDNA 42 2.1
7ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-bind... 42 2.1
8emb|CR648095.2|CNS0EZ1H Tetraodon nigroviridis full-length cDNA 42 2.1
9emb|CR639300.2|CNS0ES96 Tetraodon nigroviridis full-length cDNA 42 2.1
10emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-06... 42 2.1
11emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chro... 42 2.1
12gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 42 2.1
13gb|AC023702.4| Drosophila melanogaster X BAC RP98-24L2 (Roswell ... 42 2.1
14gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell... 42 2.1
15gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 ... 42 2.1
16emb|AL732498.15| Mouse DNA sequence from clone RP23-323E6 on chr... 42 2.1
17gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 8.2
18emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 40 8.2
19ref|XM_799551.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.2
20ref|XM_808666.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.2
21emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 40 8.2
22emb|AL021046.4|SPAC3G9 S.pombe chromosome I cosmid c3G9 40 8.2
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
25gb|AC007463.3| Homo sapiens BAC clone RP11-244L12 from 2, comple... 40 8.2
26gb|AF373806.1| Sinorhizobium meliloti GTP cyclohydrolase/3,4-dih... 40 8.2
27ref|XM_218601.3| PREDICTED: Rattus norvegicus similar to hypothe... 40 8.2
28dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 8.2
29dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
30dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
31dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
32ref|XM_317857.2| Anopheles gambiae str. PEST ENSANGP00000014192 ... 40 8.2
33ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 ... 40 8.2
34dbj|AK072932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
35dbj|AK070960.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
36emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 8.2

>ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4840),
            partial mRNA
          Length = 7230

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 186  gaagttgaagttgtagctgttgat 209
            ||||||||||||||||||||||||
Sbjct: 6802 gaagttgaagttgtagctgttgat 6779



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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 430     gagatgctgatctgcgcgccgaggccgagct 460
               ||||||| ||||| |||||||||||||||||
Sbjct: 2804480 gagatgccgatctccgcgccgaggccgagct 2804510



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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 430     gagatgctgatctgcgcgccgaggccgagct 460
               ||||||| ||||| |||||||||||||||||
Sbjct: 2827302 gagatgccgatctccgcgccgaggccgagct 2827332



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>gb|DQ490515.1| Emericella nidulans alpha-galactosidase (AN8138-2) mRNA, complete cds
          Length = 2253

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 568  ttctcggcggaggtgtcgttgacgg 592
            ||||| |||||||||||||||||||
Sbjct: 1313 ttctcagcggaggtgtcgttgacgg 1289



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>ref|XM_676315.1| Aspergillus nidulans FGSC A4 alpha-galactosidase C precursor
            (AN8138.2), mRNA
          Length = 2253

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 568  ttctcggcggaggtgtcgttgacgg 592
            ||||| |||||||||||||||||||
Sbjct: 1313 ttctcagcggaggtgtcgttgacgg 1289



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>emb|CR683301.2|CNS0FQ6P Tetraodon nigroviridis full-length cDNA
          Length = 815

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 377 tcaccttcttctccatggtct 397
           |||||||||||||||||||||
Sbjct: 160 tcaccttcttctccatggtct 140



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>ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-binding domain
            (Chro.80556) partial mRNA
          Length = 5922

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 186  gaagttgaagttgtagctgttgatg 210
            |||| ||||||||||||||||||||
Sbjct: 5524 gaagctgaagttgtagctgttgatg 5500



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>emb|CR648095.2|CNS0EZ1H Tetraodon nigroviridis full-length cDNA
          Length = 1458

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 377 tcaccttcttctccatggtct 397
           |||||||||||||||||||||
Sbjct: 852 tcaccttcttctccatggtct 832



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>emb|CR639300.2|CNS0ES96 Tetraodon nigroviridis full-length cDNA
          Length = 1478

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 377 tcaccttcttctccatggtct 397
           |||||||||||||||||||||
Sbjct: 861 tcaccttcttctccatggtct 841



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>emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-065B04, complete sequence
          Length = 35005

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   attgatgataattaagataaa 131
             |||||||||||||||||||||
Sbjct: 24109 attgatgataattaagataaa 24129



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>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the
             3' end of the gene for apobec-1 complementation factor
             (ACF) (ASP), the gene for a novel protein similar to
             N-acylsphingosine amidohydrolase (non-lysosomal
             ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2)
             pseudogene, three novel pseudogenes (KIAA1553), a novel
             gene, a protein geranylgeranyltransferase type I beta
             subunit (PGGT1B) pseudogene and a CpG island, complete
             sequence
          Length = 178899

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   caccttcttctccatggtctg 398
             |||||||||||||||||||||
Sbjct: 47031 caccttcttctccatggtctg 47051



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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    gatgataattaagataaagcg 134
              |||||||||||||||||||||
Sbjct: 319934 gatgataattaagataaagcg 319914



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>gb|AC023702.4| Drosophila melanogaster X BAC RP98-24L2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 159970

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 180    agtgtcgaagttgaagttgtagctg 204
              ||||||||||||||||||| |||||
Sbjct: 118453 agtgtcgaagttgaagttgaagctg 118429



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>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 184175

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 180   agtgtcgaagttgaagttgtagctg 204
             ||||||||||||||||||| |||||
Sbjct: 59958 agtgtcgaagttgaagttgaagctg 59934



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>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete
             sequence
          Length = 318665

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 180   agtgtcgaagttgaagttgtagctg 204
             ||||||||||||||||||| |||||
Sbjct: 86847 agtgtcgaagttgaagttgaagctg 86823



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>emb|AL732498.15| Mouse DNA sequence from clone RP23-323E6 on chromosome 4, complete
              sequence
          Length = 145881

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 551    gcctgagcctcttggtgttct 571
              |||||||||||||||||||||
Sbjct: 100936 gcctgagcctcttggtgttct 100956



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 444     cgcgccgaggccgagcttgg 463
               ||||||||||||||||||||
Sbjct: 1377067 cgcgccgaggccgagcttgg 1377048



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>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    gatctgcgcgccgaggccga 457
              ||||||||||||||||||||
Sbjct: 124379 gatctgcgcgccgaggccga 124360



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>ref|XM_799551.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506215.19) partial mRNA
          Length = 4810

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 586  ttgacggccgccgtggtggc 605
            ||||||||||||||||||||
Sbjct: 1190 ttgacggccgccgtggtggc 1171



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>ref|XM_808666.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053511285.4) partial mRNA
          Length = 1905

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 586  ttgacggccgccgtggtggc 605
            ||||||||||||||||||||
Sbjct: 1190 ttgacggccgccgtggtggc 1171



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>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 524   tgctcatctcctcctcctcgtaca 547
             |||| |||||||||||||||||||
Sbjct: 89350 tgcttatctcctcctcctcgtaca 89373



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>emb|AL021046.4|SPAC3G9 S.pombe chromosome I cosmid c3G9
          Length = 38096

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    atactacgttgtttcctctccatc 86
             |||||||||||||| |||||||||
Sbjct: 13853 atactacgttgtttactctccatc 13876



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 302      tgctcctggtcgcgatggccatga 325
                ||||||||| ||||||||||||||
Sbjct: 20701156 tgctcctggccgcgatggccatga 20701133



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 523      gtgctcatctcctcctcctc 542
                ||||||||||||||||||||
Sbjct: 27980990 gtgctcatctcctcctcctc 27981009



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>gb|AC007463.3| Homo sapiens BAC clone RP11-244L12 from 2, complete sequence
          Length = 166892

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 458   gcttggggaaccctgccctaatgg 481
             ||||||||| ||||||||||||||
Sbjct: 34316 gcttggggacccctgccctaatgg 34339



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>gb|AF373806.1| Sinorhizobium meliloti GTP cyclohydrolase/3,4-dihydroxy-2-butanone
            4-phosphate synthase (ribA) gene, complete cds
          Length = 1426

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 438  gatctgcgcgccgaggccga 457
            ||||||||||||||||||||
Sbjct: 1098 gatctgcgcgccgaggccga 1079



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>ref|XM_218601.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
           FLJ23311 (predicted) (LOC308607), mRNA
          Length = 3460

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 ggtgctcctggtcgcgatgg 319
           ||||||||||||||||||||
Sbjct: 264 ggtgctcctggtcgcgatgg 283



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 438     gatctgcgcgccgaggccga 457
               ||||||||||||||||||||
Sbjct: 6166149 gatctgcgcgccgaggccga 6166130



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>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_A08
          Length = 119304

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 523   gtgctcatctcctcctcctc 542
             ||||||||||||||||||||
Sbjct: 24652 gtgctcatctcctcctcctc 24671



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>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0427B07
          Length = 172058

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 302    tgctcctggtcgcgatggccatga 325
              ||||||||| ||||||||||||||
Sbjct: 123563 tgctcctggccgcgatggccatga 123540



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>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1123_G04
          Length = 124666

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 523    gtgctcatctcctcctcctc 542
              ||||||||||||||||||||
Sbjct: 108442 gtgctcatctcctcctcctc 108461



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>ref|XM_317857.2| Anopheles gambiae str. PEST ENSANGP00000014192
           (ENSANGG00000011703), partial mRNA
          Length = 1299

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 525 gctcatctcctcctcctcgt 544
           ||||||||||||||||||||
Sbjct: 864 gctcatctcctcctcctcgt 845



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>ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 (ENSANGG00000004156),
            partial mRNA
          Length = 7809

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  agttgtagctgttgatgccg 213
            ||||||||||||||||||||
Sbjct: 2962 agttgtagctgttgatgccg 2943



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>dbj|AK072932.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144J15, full
           insert sequence
          Length = 842

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 302 tgctcctggtcgcgatggccatga 325
           ||||||||| ||||||||||||||
Sbjct: 591 tgctcctggccgcgatggccatga 614



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>dbj|AK070960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068B22, full
           insert sequence
          Length = 1485

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 523 gtgctcatctcctcctcctc 542
           ||||||||||||||||||||
Sbjct: 216 gtgctcatctcctcctcctc 235



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 482     tggaattgtagccgagcttgagct 505
               |||||||| |||||||||||||||
Sbjct: 4568087 tggaattgaagccgagcttgagct 4568064


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,709,448
Number of Sequences: 3902068
Number of extensions: 4709448
Number of successful extensions: 90298
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89928
Number of HSP's gapped (non-prelim): 370
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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