ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11e18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FINC_HUMAN (P02751) Fibronectin precursor (FN) (Cold-insoluble g... 29 3.7
2FINC_CHICK (P11722) Fibronectin (FN) (Fragments) 28 4.8

>FINC_HUMAN (P02751) Fibronectin precursor (FN) (Cold-insoluble globulin) (CIG)|
          Length = 2386

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +3

Query: 27   MNADSVTRHQLAPSHSSTGYKIK---AY*NGKPKWDLNLHSMDKLVHSDI 167
            + A+S T H +AP  + TGY+I+    + +G+P+ D   HS + +  +++
Sbjct: 1369 ITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNL 1418



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>FINC_CHICK (P11722) Fibronectin (FN) (Fragments)|
          Length = 1256

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 12  LXHGSMNADSVTRHQLAPSHSSTGYKIKAY*N---GKPKWD 125
           L    + A+S T H +AP  + TGYKI+ +     G+PK D
Sbjct: 333 LDFSDITANSFTVHWIAPRATITGYKIRHHPEHGVGRPKED 373


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,264,111
Number of Sequences: 219361
Number of extensions: 588667
Number of successful extensions: 1290
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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