ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11e15 |
|---|---|
| Clone Library Name | barley_pub |
>BGAL_CANFA (Q9TRY9) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 668 Score = 93.2 bits (230), Expect = 6e-19 Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 4/151 (2%) Frame = -2 Query: 628 GPYIFDQKGILSPVEIDGVTLRNWRMYPLSFDLLGNLSKFQPILQITDARASKVSIHSGS 449 G YI D KG++S + + L NW ++PL+ + DA S + G Sbjct: 487 GRYINDFKGLISNLTLGSSILTNWMIFPLNTE---------------DAVRSHLGGWHGP 531 Query: 448 QNKLRDLSF-YQNGNSEEPEFYEGHFHIDSN--STIKDTFISFRGWNKGVAFVNNFNIGR 278 N D +F +++ N P FY G+F I S +DTFI F GW KG ++N FN+GR Sbjct: 532 NNGRHDKTFAHRSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGR 591 Query: 277 FWPAMGPQCALYVPAPLL-KSGDNVVVIFEL 188 +WPA GPQ L+VP +L S N +++ EL Sbjct: 592 YWPARGPQMTLFVPRHILVTSTPNTIMVLEL 622
>BGAL_MACFA (Q60HF6) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 682 Score = 85.9 bits (211), Expect = 9e-17 Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Frame = -2 Query: 628 GPYIFDQKGILSPVEIDGVTLRNWRMYPLSFDLLGNLSKFQPILQITDARASKVSIHSGS 449 G YI D KG++S + +D L W ++PL + DA S + Sbjct: 486 GAYINDFKGLVSNLTLDSNILTGWTIFPLDTE---------------DAVRSHLGGWEHR 530 Query: 448 QNKLRDLSF-YQNGNSEEPEFYEGHFHIDSN--STIKDTFISFRGWNKGVAFVNNFNIGR 278 + D ++ + + N P FY G+F I S +DTFI F GW KG ++N FN+GR Sbjct: 531 DSGRHDEAWAHSSSNYTLPAFYVGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGR 590 Query: 277 FWPAMGPQCALYVPAP-LLKSGDNVVVIFEL 188 +WPA GPQ L+VP L+ S N + + EL Sbjct: 591 YWPARGPQLTLFVPQHILMTSAPNTITVLEL 621
>BGAL_MOUSE (P23780) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 647 Score = 85.5 bits (210), Expect = 1e-16 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 3/150 (2%) Frame = -2 Query: 628 GPYIFDQKGILSPVEIDGVTLRNWRMYPLSFDLLGNLSKFQPILQITDARASKVSIHSGS 449 G +I D KG++S + I+ L NW ++PL+ + + R + Sbjct: 488 GRFINDFKGLISNMTINSTVLTNWTVFPLNTEAM--------------VRNHLWGREASD 533 Query: 448 QNKLRDLSFYQNGNSEEPEFYEGHFHIDSN--STIKDTFISFRGWNKGVAFVNNFNIGRF 275 + L S + + P FY G+F I S +DTFI F GW+KG ++N FN+GR+ Sbjct: 534 EGHLDGRSTSNSSDLILPTFYVGNFSIPSGIPDLPQDTFIQFPGWSKGQVWINGFNLGRY 593 Query: 274 WPAMGPQCALYVPAPLL-KSGDNVVVIFEL 188 WP MGPQ L+VP +L S N + + EL Sbjct: 594 WPTMGPQKTLFVPRNILTTSAPNNITVLEL 623
>BGAL_FELCA (O19015) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 669 Score = 85.5 bits (210), Expect = 1e-16 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 5/152 (3%) Frame = -2 Query: 628 GPYIFDQKGILSPVEIDGVTLRNWRMYPLSFDLLGNLSKFQPILQITDARASKVSIHSGS 449 G YI D KG++S + + L +W ++PL + DA S + G Sbjct: 487 GRYINDFKGLISNLTLGSSVLTDWMIFPLDTE---------------DAVRSHLGGWHGR 531 Query: 448 QNKLRDLSFYQNGNSEE--PEFYEGHFHIDSN--STIKDTFISFRGWNKGVAFVNNFNIG 281 + +D + + +S P FY G+F I S +DTFI F GW KG ++N FN+G Sbjct: 532 NHGRQDNKAFAHHSSNYTLPAFYAGNFSIPSGIPDLPQDTFIQFSGWTKGQVWINGFNLG 591 Query: 280 RFWPAMGPQCALYVPAPLL-KSGDNVVVIFEL 188 R+WP GPQ L+VP +L S N +++ EL Sbjct: 592 RYWPGRGPQVTLFVPRHILVTSAPNTIMVLEL 623
>BGAM_HUMAN (P16279) Beta-galactosidase-related protein precursor| (Beta-galactosidase-like protein) (S-Gal) (Elastin-binding protein) (EBP) Length = 546 Score = 84.0 bits (206), Expect = 3e-16 Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 4/151 (2%) Frame = -2 Query: 628 GPYIFDQKGILSPVEIDGVTLRNWRMYPLSFDLLGNLSKFQPILQITDARASKVSIHSGS 449 G YI D KG++S + + L +W ++PL + DA S + Sbjct: 355 GAYINDFKGLVSNLTLSSNILTDWTIFPLDTE---------------DAVRSHLGGWGHR 399 Query: 448 QNKLRDLSFYQNG-NSEEPEFYEGHFHIDSN--STIKDTFISFRGWNKGVAFVNNFNIGR 278 + D ++ N N P FY G+F I S +DTFI F GW KG ++N FN+GR Sbjct: 400 DSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGR 459 Query: 277 FWPAMGPQCALYVPAP-LLKSGDNVVVIFEL 188 +WPA GPQ L+VP L+ S N + + EL Sbjct: 460 YWPARGPQLTLFVPQHILMTSAPNTITVLEL 490
>BGAL_HUMAN (P16278) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid| beta-galactosidase) Length = 677 Score = 84.0 bits (206), Expect = 3e-16 Identities = 52/151 (34%), Positives = 74/151 (49%), Gaps = 4/151 (2%) Frame = -2 Query: 628 GPYIFDQKGILSPVEIDGVTLRNWRMYPLSFDLLGNLSKFQPILQITDARASKVSIHSGS 449 G YI D KG++S + + L +W ++PL + DA S + Sbjct: 486 GAYINDFKGLVSNLTLSSNILTDWTIFPLDTE---------------DAVRSHLGGWGHR 530 Query: 448 QNKLRDLSFYQNG-NSEEPEFYEGHFHIDSN--STIKDTFISFRGWNKGVAFVNNFNIGR 278 + D ++ N N P FY G+F I S +DTFI F GW KG ++N FN+GR Sbjct: 531 DSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGR 590 Query: 277 FWPAMGPQCALYVPAP-LLKSGDNVVVIFEL 188 +WPA GPQ L+VP L+ S N + + EL Sbjct: 591 YWPARGPQLTLFVPQHILMTSAPNTITVLEL 621
>BGAL_XANMN (P48982) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)| Length = 598 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/53 (41%), Positives = 30/53 (56%) Frame = -2 Query: 397 PEFYEGHFHIDSNSTIKDTFISFRGWNKGVAFVNNFNIGRFWPAMGPQCALYV 239 P F+ G I T DT++ R + KG A+ N N+GR W +GPQ ALY+ Sbjct: 525 PAFHRGTLRI---GTPTDTYLDMRAFGKGFAWANGVNLGRHW-NIGPQTALYL 573
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = +3 Query: 108 IIFHRFGPHVKSGSFTKLIVCSGFRPCSSKITTTLSPDLSSGAGTYRAHCGPI 266 + ++GPH+KSG LIV S + + P L++ T HCG I Sbjct: 1075 VCISKYGPHIKSGQI--LIV-----RVDSLVIRSAKPHLATPGATVHGHCGEI 1120
>GP115_HUMAN (Q8IZF3) Probable G-protein coupled receptor 115 (G-protein coupled| receptor PGR18) Length = 752 Score = 30.8 bits (68), Expect = 3.5 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Frame = -2 Query: 583 IDGVTLRNWRMYPLSFDLLGNLSKFQPILQITDARASKVSIHSGSQNKLRDL-----SFY 419 +D + NW P N + +LQ + A ++ IH+ S+N + +L F+ Sbjct: 251 LDTAAISNWAFIP-------NKNASSDLLQSVNLFARQLHIHNNSENIVNELFIQTKGFH 303 Query: 418 QNGNSEEPEFYEGHFHIDSNSTIKDTFISFRGWNKGVAFVNNFNIGRFWPAMGPQCALYV 239 N N+ E +F + N+T +D G+ + + + WP ++ Sbjct: 304 INHNTSEKSL---NFSMSMNNTTEDIL--------GMVQIPRQELRKLWPNASQAISIAF 352 Query: 238 P 236 P Sbjct: 353 P 353
>RP1_PAPHA (Q8MJ06) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein| homolog) Length = 2152 Score = 30.0 bits (66), Expect = 5.9 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Frame = -2 Query: 619 IFDQKGILSPVEIDGVTLRNWRMYPLSFDLLGNLSKFQPILQ---ITDARASKVSIHSGS 449 IFDQ + ++ G + R+ L + GNL KFQP L+ + + + + S Sbjct: 1983 IFDQFYFNNTFDLMGKRRKQKRINFLELEEEGNLKKFQPDLKERLCMNFLHTSLLVVSNM 2042 Query: 448 QNKLRDLSFYQNGNSEEPEFYEGHFHIDSNSTIKDTFISFRGWNKGVAFVNNFNIGRFWP 269 + +DLS S+ E ++ +D N+ + +T N N N F+ Sbjct: 2043 NSDTQDLS------SQTNEMFKA---VDENNNLLNTGFQGSRTNLNQIVRENTNCHYFFE 2093 Query: 268 AMGPQCAL 245 +G C L Sbjct: 2094 MLGQACLL 2101
>Y4GJ_RHISN (P55466) Hypothetical 21.1 kDa protein y4gJ| Length = 192 Score = 30.0 bits (66), Expect = 5.9 Identities = 19/64 (29%), Positives = 27/64 (42%) Frame = +3 Query: 114 FHRFGPHVKSGSFTKLIVCSGFRPCSSKITTTLSPDLSSGAGTYRAHCGPIAGQNLPMLK 293 FH P K+ SFT V F S +IT + +++ + H A L ML+ Sbjct: 130 FHETSPRAKNASFTWTAVDGEFAAPSERITNEMLAEITERNADFLGH----AQSGLEMLR 185 Query: 294 LFTK 305 F K Sbjct: 186 RFEK 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,731,031 Number of Sequences: 219361 Number of extensions: 2036878 Number of successful extensions: 5575 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5433 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5568 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
