ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11e15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475792.1| Oryza sativa (japonica cultivar-group), predic... 178 1e-41
2dbj|AK068572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 1e-41
3gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome... 125 2e-25
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5gb|AC087252.3| Papio anubis clone RP41-265N24, complete sequence 42 2.2
6ref|XM_851504.1| PREDICTED: Canis familiaris similar to Secreted... 42 2.2
7ref|XM_851467.1| PREDICTED: Canis familiaris similar to Secreted... 42 2.2
8ref|XM_540377.2| PREDICTED: Canis familiaris similar to Secreted... 42 2.2
9gb|AC130711.3| Mus musculus BAC clone RP23-22M24 from chromosome... 42 2.2
10ref|XM_735730.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 2.2
11gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete s... 42 2.2
12gb|AC152067.21| Medicago truncatula clone mth2-22g24, complete s... 42 2.2
13gb|BC009019.1| Mus musculus intraflagellar transport 140 homolog... 42 2.2
14dbj|AK149331.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 42 2.2
15dbj|AK172033.1| Mus musculus activated spleen cDNA, RIKEN full-l... 42 2.2
16dbj|AK163782.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 2.2
17gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 42 2.2
18gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold 42 2.2
19dbj|AK129167.1| Mus musculus mRNA for mKIAA0590 protein 42 2.2
20emb|CT573100.6| Mouse DNA sequence from clone RP23-218E7 on chro... 42 2.2
21gb|AC151009.3| Macaca mulatta clone CH250-569F1, complete sequence 42 2.2
22ref|NM_134126.2| Mus musculus intraflagellar transport 140 homol... 42 2.2
23gb|AY609867.1| Sus scrofa clone Clu_3685.scr.msk.p1.Contig4, mRN... 42 2.2
24gb|AC156348.3| Colobus guereza clone CH272-110A23, complete sequ... 42 2.2
25gb|AC153073.3| Cercopithecus aethiops clone CH252-228B1, complet... 42 2.2
26gb|DQ266093.1| Mus musculus intraflagellar transport protein 140... 42 2.2
27ref|NM_202620.1| Arabidopsis thaliana unknown protein AT3G21600 ... 40 8.6
28ref|NM_113055.3| Arabidopsis thaliana unknown protein AT3G21600 ... 40 8.6
29gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's ... 40 8.6
30gb|AC147222.4| Mus musculus BAC clone RP23-69L20 from chromosome... 40 8.6
31gb|AC161205.3| Mus musculus chromosome 7, clone RP23-53C15, comp... 40 8.6
32gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cance... 40 8.6
33gb|AC165966.3| Mus musculus BAC clone RP23-259L2 from chromosome... 40 8.6
34gb|AC115881.8| Mus musculus chromosome 6, clone RP24-365K16, com... 40 8.6
35gb|AC122868.2| Mus musculus BAC clone RP23-148H17 from 6, comple... 40 8.6
36gb|AC121859.2| Mus musculus BAC clone RP24-104F15 from 6, comple... 40 8.6
37emb|AL672206.1| Human DNA sequence from clone RP1-232L22 on chro... 40 8.6
38emb|AL590230.5| Human DNA sequence from clone RP11-254L20 on chr... 40 8.6
39emb|AL109835.13|HSA151N12 Human DNA sequence from clone RP11-151... 40 8.6
40gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Ca... 40 8.6
41gb|AC113298.14| Mus musculus chromosome 7, clone RP23-428N8, com... 40 8.6
42emb|BX548005.11| Zebrafish DNA sequence from clone DKEY-105A17 i... 40 8.6
43gb|AC003075.2| Homo sapiens PAC clone RP4-658N5 from 7p21, compl... 40 8.6
44gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, compl... 40 8.6
45gb|AC019240.7|AC019240 Homo sapiens chromosome 18, clone RP11-51... 40 8.6
46gb|AC158596.7| Mus musculus 10 BAC RP23-188F7 (Roswell Park Canc... 40 8.6
47gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswel... 40 8.6
48emb|BX823062.1|CNS0A7B0 Arabidopsis thaliana Full-length cDNA Co... 40 8.6
49emb|BX824399.1|CNS0A6XG Arabidopsis thaliana Full-length cDNA Co... 40 8.6
50emb|BX825508.1|CNS0A6HJ Arabidopsis thaliana Full-length cDNA Co... 40 8.6
51emb|BX824640.1|CNS0A6P6 Arabidopsis thaliana Full-length cDNA Co... 40 8.6
52emb|BX823865.1|CNS0A6OW Arabidopsis thaliana Full-length cDNA Co... 40 8.6
53dbj|AB019232.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.6
54emb|CT573019.12| Mouse DNA sequence from clone RP24-94G12 on chr... 40 8.6
55dbj|D38148.1|RO1NSP1B Rotavirus sp. A5-13 NSP1 gene, complete cds 40 8.6
56dbj|AP004505.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 8.6
57emb|AL772300.10| Zebrafish DNA sequence from clone CH211-165G14,... 40 8.6
58gb|AC153955.3| Mus musculus 10 BAC RP24-167A12 (Roswell Park Can... 40 8.6
59emb|AL844537.5| Mouse DNA sequence from clone RP23-448A16 on chr... 40 8.6 
>ref|XM_475792.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1986

 Score =  178 bits (90), Expect = 1e-41
 Identities = 189/222 (85%)
 Strand = Plus / Minus

                                                                        
Query: 129  ccgcacgtgaaatctggatcttttactaagttgatagtatgctcaggatttaggccgtgc 188
            ||||| |||||||||||||| || ||||| ||||| ||  ||||||| ||| | |  |||
Sbjct: 1979 ccgcatgtgaaatctggatccttcactaacttgatggtgagctcagggtttggactatgc 1920

                                                                        
Query: 189  agttcgaagattacaacaacgttgtctccagatttgagcagtggtgcgggaacatataga 248
            ||||| ||||| ||||  || || ||||||| |||||| |  || || |||||||| |||
Sbjct: 1919 agttcaaagatcacaatgacattatctccaggtttgaggatcggcgcaggaacatacaga 1860

                                                                        
Query: 249  gcacattgtggtcccattgccggccagaaccttccaatgttgaagttgttcacaaaagca 308
            || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1859 gcgcattgtggtccaatggccggccagaaccttccaatgttgaagttgttcacaaaagcg 1800

                                                      
Query: 309  acccctttgttccaaccacgaaatgatatgaatgtatccttt 350
            || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 1799 actcctttattccaacctcgaaatgatatgaatgtgtccttt 1758



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 152/188 (80%)
 Strand = Plus / Minus

                                                                        
Query: 438  aacttattttgtgaaccactatgaatggacactttgctagctctggcgtcagtgatctgc 497
            |||||||||| |||| ||| || |||||| ||||||||||||   || ||||| ||||||
Sbjct: 1667 aacttattttctgaatcaccataaatggatactttgctagcttcagcatcagtcatctgc 1608

                                                                        
Query: 498  aggattggttggaatttcgaaaggttgcccagtaaatcgaatgataatggatacattctc 557
            | |||| |||| | ||| |||||||||||||    ||  | ||| |  |||| |||| ||
Sbjct: 1607 atgattagttgaagttttgaaaggttgcccaccgcattaagtgaaaccggatgcattttc 1548

                                                                        
Query: 558  cagttacggagagtaacaccatcaatttcaacaggagataatatacccttctggtcaaaa 617
            |||| ||||||| |||  ||||| |||||||||| ||||| ||| |||||||||||||||
Sbjct: 1547 cagtgacggagaataatgccatctatttcaacagaagatagtatgcccttctggtcaaaa 1488

                    
Query: 618  atgtatgg 625
            || |||||
Sbjct: 1487 atatatgg 1480
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>dbj|AK068572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156K22, full
            insert sequence
          Length = 2460

 Score =  178 bits (90), Expect = 1e-41
 Identities = 189/222 (85%)
 Strand = Plus / Minus

                                                                        
Query: 129  ccgcacgtgaaatctggatcttttactaagttgatagtatgctcaggatttaggccgtgc 188
            ||||| |||||||||||||| || ||||| ||||| ||  ||||||| ||| | |  |||
Sbjct: 2174 ccgcatgtgaaatctggatccttcactaacttgatggtgagctcagggtttggactatgc 2115

                                                                        
Query: 189  agttcgaagattacaacaacgttgtctccagatttgagcagtggtgcgggaacatataga 248
            ||||| ||||| ||||  || || ||||||| |||||| |  || || |||||||| |||
Sbjct: 2114 agttcaaagatcacaatgacattatctccaggtttgaggatcggcgcaggaacatacaga 2055

                                                                        
Query: 249  gcacattgtggtcccattgccggccagaaccttccaatgttgaagttgttcacaaaagca 308
            || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 2054 gcgcattgtggtccaatggccggccagaaccttccaatgttgaagttgttcacaaaagcg 1995

                                                      
Query: 309  acccctttgttccaaccacgaaatgatatgaatgtatccttt 350
            || ||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 1994 actcctttattccaacctcgaaatgatatgaatgtgtccttt 1953



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 152/188 (80%)
 Strand = Plus / Minus

                                                                        
Query: 438  aacttattttgtgaaccactatgaatggacactttgctagctctggcgtcagtgatctgc 497
            |||||||||| |||| ||| || |||||| ||||||||||||   || ||||| ||||||
Sbjct: 1862 aacttattttctgaatcaccataaatggatactttgctagcttcagcatcagtcatctgc 1803

                                                                        
Query: 498  aggattggttggaatttcgaaaggttgcccagtaaatcgaatgataatggatacattctc 557
            | |||| |||| | ||| |||||||||||||    ||  | ||| |  |||| |||| ||
Sbjct: 1802 atgattagttgaagttttgaaaggttgcccaccgcattaagtgaaaccggatgcattttc 1743

                                                                        
Query: 558  cagttacggagagtaacaccatcaatttcaacaggagataatatacccttctggtcaaaa 617
            |||| ||||||| |||  ||||| |||||||||| ||||| ||| |||||||||||||||
Sbjct: 1742 cagtgacggagaataatgccatctatttcaacagaagatagtatgcccttctggtcaaaa 1683

                    
Query: 618  atgtatgg 625
            || |||||
Sbjct: 1682 atatatgg 1675
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>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01,
              complete sequence
          Length = 144395

 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Plus

                                                                          
Query: 268    ccggccagaaccttccaatgttgaagttgttcacaaaagcaacccctttgttccaaccac 327
              |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct: 101926 ccggccagaaccttccaatgttgaagttgttcacaaaagcgactcctttattccaacctc 101985

                                     
Query: 328    gaaatgatatgaatgtatccttt 350
              |||||||||||||||| ||||||
Sbjct: 101986 gaaatgatatgaatgtgtccttt 102008



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                          
Query: 438    aacttattttgtgaaccactatgaatggacactttgctagctctggcgtcagtgatctgc 497
              |||||||||| |||| ||| || |||||| ||||||||||||   || ||||| ||||||
Sbjct: 102683 aacttattttctgaatcaccataaatggatactttgctagcttcagcatcagtcatctgc 102742

                                             
Query: 498    aggattggttggaatttcgaaaggttgccca 528
              | |||| |||| | ||| |||||||||||||
Sbjct: 102743 atgattagttgaagttttgaaaggttgccca 102773
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  125 bits (63), Expect = 2e-25
 Identities = 78/83 (93%)
 Strand = Plus / Plus

                                                                            
Query: 268      ccggccagaaccttccaatgttgaagttgttcacaaaagcaacccctttgttccaaccac 327
                |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct: 26588451 ccggccagaaccttccaatgttgaagttgttcacaaaagcgactcctttattccaacctc 26588510

                                       
Query: 328      gaaatgatatgaatgtatccttt 350
                |||||||||||||||| ||||||
Sbjct: 26588511 gaaatgatatgaatgtgtccttt 26588533



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Plus

                                                                            
Query: 438      aacttattttgtgaaccactatgaatggacactttgctagctctggcgtcagtgatctgc 497
                |||||||||| |||| ||| || |||||| ||||||||||||   || ||||| ||||||
Sbjct: 26589208 aacttattttctgaatcaccataaatggatactttgctagcttcagcatcagtcatctgc 26589267

                                               
Query: 498      aggattggttggaatttcgaaaggttgccca 528
                | |||| |||| | ||| |||||||||||||
Sbjct: 26589268 atgattagttgaagttttgaaaggttgccca 26589298
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>gb|AC087252.3| Papio anubis clone RP41-265N24, complete sequence
          Length = 179525

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    tttttcagttgagaatcttgg 79
             |||||||||||||||||||||
Sbjct: 32804 tttttcagttgagaatcttgg 32824
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>ref|XM_851504.1| PREDICTED: Canis familiaris similar to Secreted frizzled-related
            protein 4 precursor (sFRP-4) (Frizzled protein, human
            endometrium) (FrpHE), transcript variant 4 (LOC483258),
            mRNA
          Length = 1895

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 143  tggatcttttactaagttgat 163
            |||||||||||||||||||||
Sbjct: 1003 tggatcttttactaagttgat 983
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>ref|XM_851467.1| PREDICTED: Canis familiaris similar to Secreted frizzled-related
            protein 4 precursor (sFRP-4) (Frizzled protein, human
            endometrium) (FrpHE), transcript variant 3 (LOC483258),
            mRNA
          Length = 1907

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 143  tggatcttttactaagttgat 163
            |||||||||||||||||||||
Sbjct: 1015 tggatcttttactaagttgat 995
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>ref|XM_540377.2| PREDICTED: Canis familiaris similar to Secreted frizzled-related
            protein 4 precursor (sFRP-4) (Frizzled protein, human
            endometrium) (FrpHE), transcript variant 1 (LOC483258),
            mRNA
          Length = 1931

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 143  tggatcttttactaagttgat 163
            |||||||||||||||||||||
Sbjct: 1039 tggatcttttactaagttgat 1019
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>gb|AC130711.3| Mus musculus BAC clone RP23-22M24 from chromosome 17, complete sequence
          Length = 226651

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   tgtctccagatttgagcagtg 231
             |||||||||||||||||||||
Sbjct: 79797 tgtctccagatttgagcagtg 79777
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>ref|XM_735730.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301042.00.0)
           partial mRNA
          Length = 654

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  atatatttagatacatgtttt 62
           |||||||||||||||||||||
Sbjct: 430 atatatttagatacatgtttt 450
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>gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete sequence
          Length = 116205

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 577   catcaatttcaacaggagata 597
             |||||||||||||||||||||
Sbjct: 68094 catcaatttcaacaggagata 68114
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>gb|AC152067.21| Medicago truncatula clone mth2-22g24, complete sequence
          Length = 86972

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 414   ttttgatagaatgacaaatca 434
             |||||||||||||||||||||
Sbjct: 42531 ttttgatagaatgacaaatca 42551
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>gb|BC009019.1| Mus musculus intraflagellar transport 140 homolog (Chlamydomonas),
            mRNA (cDNA clone IMAGE:3155692), complete cds
          Length = 2662

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  tgtctccagatttgagcagtg 231
            |||||||||||||||||||||
Sbjct: 1398 tgtctccagatttgagcagtg 1378
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>dbj|AK149331.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930027L05 product:TCE5 (Fragment), full insert
            sequence
          Length = 3812

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  tgtctccagatttgagcagtg 231
            |||||||||||||||||||||
Sbjct: 3809 tgtctccagatttgagcagtg 3789
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>dbj|AK172033.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830031M20 product:C380F5.1.1 (KIAA0590
            (Isoform 1)) (Fragment) homolog [Homo sapiens], full
            insert sequence
          Length = 2933

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  tgtctccagatttgagcagtg 231
            |||||||||||||||||||||
Sbjct: 1680 tgtctccagatttgagcagtg 1660
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>dbj|AK163782.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130023A05 product:TCE5 (Fragment), full
            insert sequence
          Length = 4206

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  tgtctccagatttgagcagtg 231
            |||||||||||||||||||||
Sbjct: 4172 tgtctccagatttgagcagtg 4152
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     tttttcagttgagaatcttgg 79
              |||||||||||||||||||||
Sbjct: 775927 tttttcagttgagaatcttgg 775947
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>gb|DP000029.1| Cercopithecus aethiops target 1 genomic scaffold
          Length = 1825024

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     tttttcagttgagaatcttgg 79
              |||||||||||||||||||||
Sbjct: 798752 tttttcagttgagaatcttgg 798772
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>dbj|AK129167.1| Mus musculus mRNA for mKIAA0590 protein
          Length = 5727

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  tgtctccagatttgagcagtg 231
            |||||||||||||||||||||
Sbjct: 3235 tgtctccagatttgagcagtg 3215
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>emb|CT573100.6| Mouse DNA sequence from clone RP23-218E7 on chromosome 12, complete
             sequence
          Length = 183966

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 375   aaatgaccttcataaaattct 395
             |||||||||||||||||||||
Sbjct: 44951 aaatgaccttcataaaattct 44931
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>gb|AC151009.3| Macaca mulatta clone CH250-569F1, complete sequence
          Length = 55553

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    tttttcagttgagaatcttgg 79
             |||||||||||||||||||||
Sbjct: 21332 tttttcagttgagaatcttgg 21352
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>ref|NM_134126.2| Mus musculus intraflagellar transport 140 homolog (Chlamydomonas)
            (Ift140), mRNA
          Length = 5154

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  tgtctccagatttgagcagtg 231
            |||||||||||||||||||||
Sbjct: 3907 tgtctccagatttgagcagtg 3887
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>gb|AY609867.1| Sus scrofa clone Clu_3685.scr.msk.p1.Contig4, mRNA sequence
          Length = 1676

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 143  tggatcttttactaagttgat 163
            |||||||||||||||||||||
Sbjct: 1099 tggatcttttactaagttgat 1079
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>gb|AC156348.3| Colobus guereza clone CH272-110A23, complete sequence
          Length = 115353

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     tttttcagttgagaatcttgg 79
              |||||||||||||||||||||
Sbjct: 100943 tttttcagttgagaatcttgg 100963
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>gb|AC153073.3| Cercopithecus aethiops clone CH252-228B1, complete sequence
          Length = 149508

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     tttttcagttgagaatcttgg 79
              |||||||||||||||||||||
Sbjct: 135197 tttttcagttgagaatcttgg 135217
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>gb|DQ266093.1| Mus musculus intraflagellar transport protein 140 (Ift140) mRNA,
            complete cds
          Length = 5154

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 211  tgtctccagatttgagcagtg 231
            |||||||||||||||||||||
Sbjct: 3907 tgtctccagatttgagcagtg 3887
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>ref|NM_202620.1| Arabidopsis thaliana unknown protein AT3G21600 transcript variant
           AT3G21600.2 mRNA, complete cds
          Length = 1307

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 gaagattacaacaacgttgt 213
           ||||||||||||||||||||
Sbjct: 502 gaagattacaacaacgttgt 521
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>ref|NM_113055.3| Arabidopsis thaliana unknown protein AT3G21600 transcript variant
           AT3G21600.1 mRNA, complete cds
          Length = 1383

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 gaagattacaacaacgttgt 213
           ||||||||||||||||||||
Sbjct: 545 gaagattacaacaacgttgt 564
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>gb|AC106169.5| Rattus norvegicus x BAC CH230-105D14 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227592

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   tggacactttgctagctctg 482
             ||||||||||||||||||||
Sbjct: 77761 tggacactttgctagctctg 77742
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>gb|AC147222.4| Mus musculus BAC clone RP23-69L20 from chromosome 6, complete sequence
          Length = 182525

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     ttcagttgagaatcttgggc 81
              ||||||||||||||||||||
Sbjct: 104176 ttcagttgagaatcttgggc 104195
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>gb|AC161205.3| Mus musculus chromosome 7, clone RP23-53C15, complete sequence
          Length = 244671

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     taacatttctgaaaatactatgga 24
             ||||||| ||||||||||||||||
Sbjct: 51883 taacattactgaaaatactatgga 51906
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>gb|AC158614.5| Mus musculus 10 BAC RP23-76C5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 223468

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    tgatatgaatgtatccttta 351
              ||||||||||||||||||||
Sbjct: 131791 tgatatgaatgtatccttta 131810
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>gb|AC165966.3| Mus musculus BAC clone RP23-259L2 from chromosome 17, complete sequence
          Length = 194944

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     gttgagaatcttgggccttt 85
              ||||||||||||||||||||
Sbjct: 107607 gttgagaatcttgggccttt 107626
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>gb|AC115881.8| Mus musculus chromosome 6, clone RP24-365K16, complete sequence
          Length = 164311

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    ggaaatgaccttcataaaat 392
              ||||||||||||||||||||
Sbjct: 131385 ggaaatgaccttcataaaat 131404
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>gb|AC122868.2| Mus musculus BAC clone RP23-148H17 from 6, complete sequence
          Length = 202374

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     ttcagttgagaatcttgggc 81
              ||||||||||||||||||||
Sbjct: 172106 ttcagttgagaatcttgggc 172087
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>gb|AC121859.2| Mus musculus BAC clone RP24-104F15 from 6, complete sequence
          Length = 205084

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  ggaaatgaccttcataaaat 392
            ||||||||||||||||||||
Sbjct: 1528 ggaaatgaccttcataaaat 1547
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>emb|AL672206.1| Human DNA sequence from clone RP1-232L22 on chromosome X Contains a
           novel zinc finger protein pseudogene, complete sequence
          Length = 30936

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 580 caatttcaacaggagataat 599
           ||||||||||||||||||||
Sbjct: 733 caatttcaacaggagataat 752
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>emb|AL590230.5| Human DNA sequence from clone RP11-254L20 on chromosome 6, complete
             sequence
          Length = 69216

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 413   attttgatagaatgacaaat 432
             ||||||||||||||||||||
Sbjct: 11000 attttgatagaatgacaaat 10981
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>emb|AL109835.13|HSA151N12 Human DNA sequence from clone RP11-151N12 on chromosome Xq21.31-22.1,
             complete sequence
          Length = 85461

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tatttagatacatgtttttc 64
             ||||||||||||||||||||
Sbjct: 34430 tatttagatacatgtttttc 34411
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>gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 201815

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    tggacactttgctagctctg 482
              ||||||||||||||||||||
Sbjct: 108595 tggacactttgctagctctg 108614
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>gb|AC113298.14| Mus musculus chromosome 7, clone RP23-428N8, complete sequence
          Length = 181555

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     taacatttctgaaaatactatgga 24
             ||||||| ||||||||||||||||
Sbjct: 51635 taacattactgaaaatactatgga 51612
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>emb|BX548005.11| Zebrafish DNA sequence from clone DKEY-105A17 in linkage group 6,
             complete sequence
          Length = 218236

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   tgaaatctggatcttttact 155
             ||||||||||||||||||||
Sbjct: 41973 tgaaatctggatcttttact 41992
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>gb|AC003075.2| Homo sapiens PAC clone RP4-658N5 from 7p21, complete sequence
          Length = 123336

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     acatttctgaaaatactatg 22
             ||||||||||||||||||||
Sbjct: 28898 acatttctgaaaatactatg 28917
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>gb|AC112183.3| Homo sapiens chromosome 5 clone RP11-152F4, complete sequence
          Length = 163612

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 582    atttcaacaggagataatat 601
              ||||||||||||||||||||
Sbjct: 132849 atttcaacaggagataatat 132830
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>gb|AC019240.7|AC019240 Homo sapiens chromosome 18, clone RP11-510D19, complete sequence
          Length = 175032

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     atatatttagatacatgttt 61
              ||||||||||||||||||||
Sbjct: 162085 atatatttagatacatgttt 162104
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>gb|AC158596.7| Mus musculus 10 BAC RP23-188F7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207673

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   aatgatatgaatgtatcctt 349
             ||||||||||||||||||||
Sbjct: 43486 aatgatatgaatgtatcctt 43467
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>gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183562

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    attttgatagaatgacaaat 432
              ||||||||||||||||||||
Sbjct: 125638 attttgatagaatgacaaat 125657
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>emb|BX823062.1|CNS0A7B0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB86ZA06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1320

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 gaagattacaacaacgttgt 213
           ||||||||||||||||||||
Sbjct: 541 gaagattacaacaacgttgt 560
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>emb|BX824399.1|CNS0A6XG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH46ZF10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1327

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 gaagattacaacaacgttgt 213
           ||||||||||||||||||||
Sbjct: 506 gaagattacaacaacgttgt 525
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>emb|BX825508.1|CNS0A6HJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL41ZB02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1315

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 gaagattacaacaacgttgt 213
           ||||||||||||||||||||
Sbjct: 502 gaagattacaacaacgttgt 521
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>emb|BX824640.1|CNS0A6P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH61ZD12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1581

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 gaagattacaacaacgttgt 213
           ||||||||||||||||||||
Sbjct: 506 gaagattacaacaacgttgt 525
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>emb|BX823865.1|CNS0A6OW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZD02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1332

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 194 gaagattacaacaacgttgt 213
           ||||||||||||||||||||
Sbjct: 545 gaagattacaacaacgttgt 564
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>dbj|AB019232.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIL23
          Length = 80818

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   gaagattacaacaacgttgt 213
             ||||||||||||||||||||
Sbjct: 45563 gaagattacaacaacgttgt 45544
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>emb|CT573019.12| Mouse DNA sequence from clone RP24-94G12 on chromosome 14, complete
              sequence
          Length = 136188

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tatttagatacatgtttttc 64
              ||||||||||||||||||||
Sbjct: 126981 tatttagatacatgtttttc 126962
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>dbj|D38148.1|RO1NSP1B Rotavirus sp. A5-13 NSP1 gene, complete cds
          Length = 1579

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 attttgatagaatgacaaat 432
           ||||||||||||||||||||
Sbjct: 601 attttgatagaatgacaaat 620
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>dbj|AP004505.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT10E18, TM0035,
            complete sequence
          Length = 106041

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   aaaatactatggaagcatga 31
            ||||||||||||||||||||
Sbjct: 5802 aaaatactatggaagcatga 5821
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>emb|AL772300.10| Zebrafish DNA sequence from clone CH211-165G14, complete sequence
          Length = 155951

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    atacatgtttttcagttgag 71
             ||||||||||||||||||||
Sbjct: 34968 atacatgtttttcagttgag 34987
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>gb|AC153955.3| Mus musculus 10 BAC RP24-167A12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 154271

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   aatgatatgaatgtatcctt 349
             ||||||||||||||||||||
Sbjct: 58214 aatgatatgaatgtatcctt 58233
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>emb|AL844537.5| Mouse DNA sequence from clone RP23-448A16 on chromosome 2, complete
             sequence
          Length = 185541

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    atacatgtttttcagttgag 71
             ||||||||||||||||||||
Sbjct: 77525 atacatgtttttcagttgag 77544


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,634,806
Number of Sequences: 3902068
Number of extensions: 5634806
Number of successful extensions: 101431
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101278
Number of HSP's gapped (non-prelim): 153
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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