ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11e14 |
|---|---|
| Clone Library Name | barley_pub |
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 62.8 bits (151), Expect(2) = 1e-17 Identities = 28/37 (75%), Positives = 34/37 (91%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 153 G PI+EIEPLVL NVVFFFIAAINPGTGKFI+ ++++ Sbjct: 237 GVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273 Score = 44.3 bits (103), Expect(2) = 1e-17 Identities = 21/21 (100%), Positives = 21/21 (100%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 IGEIITGKGALAQLNIETGVP Sbjct: 219 IGEIITGKGALAQLNIETGVP 239 Score = 36.2 bits (82), Expect(2) = 5e-05 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 +GE ITGKG L+QLN+ETG+P Sbjct: 115 LGEGITGKGILSQLNLETGIP 135 Score = 28.1 bits (61), Expect(2) = 5e-05 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINP--GTGKFI 171 G PI E EPL+LF ++F + AI G+F+ Sbjct: 133 GIPIYEAEPLLLFFILFTLLGAIGALGDRGRFV 165
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 63.9 bits (154), Expect(2) = 2e-17 Identities = 26/37 (70%), Positives = 35/37 (94%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 153 G PI+EIEPL+LFN+VFFF+AAINPGTGKF++ E+++ Sbjct: 238 GVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274 Score = 42.7 bits (99), Expect(2) = 2e-17 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 IGEIITGKGALAQLN ETGVP Sbjct: 220 IGEIITGKGALAQLNFETGVP 240 Score = 38.5 bits (88), Expect(2) = 5e-06 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 +GE ITGKG LAQLN+ETG+P Sbjct: 114 LGEAITGKGILAQLNLETGIP 134 Score = 29.3 bits (64), Expect(2) = 5e-06 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAIN--PGTGKFI 171 G PI E EPL+LF ++F + AI GKFI Sbjct: 132 GIPIYEAEPLLLFFILFNLLGAIGALEDRGKFI 164
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 63.2 bits (152), Expect(2) = 3e-17 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 153 G PI+EIEPL+LFN+ FFF AAINPGTGKFI+ E++D Sbjct: 240 GVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 Score = 42.7 bits (99), Expect(2) = 3e-17 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 IGEIITGKGALAQLN ETGVP Sbjct: 222 IGEIITGKGALAQLNFETGVP 242 Score = 38.5 bits (88), Expect(2) = 4e-06 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 +GE ITGKG LAQLN+ETG+P Sbjct: 116 LGEAITGKGILAQLNLETGIP 136 Score = 29.6 bits (65), Expect(2) = 4e-06 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINP--GTGKFISGEDDD*IGTGTRECFLAINCTYVRAL 90 G PI E EPL+LF ++F + AI G+FI DD TG + + ++ AL Sbjct: 134 GIPIYEAEPLLLFFILFNLLGAIGALGDRGRFI---DDPAPATGLEKAVIPPGKSFKSAL 190
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 63.2 bits (152), Expect(2) = 3e-17 Identities = 27/37 (72%), Positives = 33/37 (89%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 153 G PI+EIEPL+LFN+ FFF AAINPGTGKFI+ E++D Sbjct: 240 GVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276 Score = 42.7 bits (99), Expect(2) = 3e-17 Identities = 20/21 (95%), Positives = 20/21 (95%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 IGEIITGKGALAQLN ETGVP Sbjct: 222 IGEIITGKGALAQLNFETGVP 242 Score = 38.5 bits (88), Expect(2) = 4e-06 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 +GE ITGKG LAQLN+ETG+P Sbjct: 116 LGEAITGKGILAQLNLETGIP 136 Score = 29.6 bits (65), Expect(2) = 4e-06 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINP--GTGKFISGEDDD*IGTGTRECFLAINCTYVRAL 90 G PI E EPL+LF ++F + AI GKF+ DD TG + + ++ AL Sbjct: 134 GIPIYEAEPLLLFFILFNLLGAIGALGDRGKFV---DDPTPPTGLEKAVIPPGKSFKSAL 190
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 55.1 bits (131), Expect(2) = 3e-15 Identities = 24/37 (64%), Positives = 29/37 (78%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINPGTGKFISGEDDD 153 G PI +IEPLVL NV FFF AAINPG GKFI+ + ++ Sbjct: 228 GIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264 Score = 43.9 bits (102), Expect(2) = 3e-15 Identities = 20/21 (95%), Positives = 21/21 (100%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 IGEIITGKGALAQLNIETG+P Sbjct: 210 IGEIITGKGALAQLNIETGIP 230 Score = 37.7 bits (86), Expect(2) = 8e-06 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -3 Query: 318 IGEIITGKGALAQLNIETGVP 256 +GE +TGKG LAQLN+ETG+P Sbjct: 106 LGEALTGKGILAQLNLETGIP 126 Score = 29.3 bits (64), Expect(2) = 8e-06 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFFFIAAINP--GTGKFI 171 G PI E EPL+LF ++F + AI GKF+ Sbjct: 124 GIPIYEAEPLLLFFILFTLLGAIGALGDRGKFV 156
>AT222_EMENI (Q5AVT9) Autophagy-related protein 22-2| Length = 593 Score = 29.3 bits (64), Expect = 2.6 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -2 Query: 112 IVRTYVLCLFVVFVRPWGVLRCKKKWSL 29 I+ Y + ++ F+R WGVL +K W + Sbjct: 455 IIPLYGMLAYIPFIRNWGVLGLQKPWEI 482
>ARNT2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 712 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -1 Query: 191 PGTGKFISGEDDD*IGTGTRECFLAINCTYVRALPVC 81 P G I ED D +G G++ C +AI V + PVC Sbjct: 290 PPAGMTIPEEDAD-VGQGSKYCLVAIGRLQVTSSPVC 325
>ARNT2_HUMAN (Q9HBZ2) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 706 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -1 Query: 191 PGTGKFISGEDDD*IGTGTRECFLAINCTYVRALPVC 81 P G I ED D +G G++ C +AI V + PVC Sbjct: 279 PPAGMTIPEEDAD-VGQGSKYCLVAIGRLQVTSSPVC 314
>TERT_YEAST (Q06163) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) Length = 884 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%) Frame = -1 Query: 263 GCPISEIEPLVLFNVVFF----FIAAINPGTGKF 174 GCPI++ +PL+ + V F F+ +++ T KF Sbjct: 825 GCPITKCDPLIEYEVRFTILNGFLESLSSNTSKF 858
>CCNL1_RAT (Q9R1Q2) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 527 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -2 Query: 319 HRGDHHGQGRAGAAQHR 269 H+G HHG R+G +HR Sbjct: 510 HKGKHHGGSRSGHGRHR 526
>CCNL1_MOUSE (Q52KE7) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 532 Score = 27.3 bits (59), Expect = 9.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -2 Query: 319 HRGDHHGQGRAGAAQHR 269 H+G HHG R+G +HR Sbjct: 515 HKGKHHGGSRSGHGRHR 531 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,031,680 Number of Sequences: 219361 Number of extensions: 457536 Number of successful extensions: 1159 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1133 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1158 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
