ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial prec... 35 0.15
2GATA2_HUMAN (P23769) Endothelial transcription factor GATA-2 (GA... 31 2.9
3PSTB_ALCFA (Q6WB51) Phosphate import ATP-binding protein pstB (E... 30 4.9
4HORN_HUMAN (Q86YZ3) Hornerin 30 8.4
5TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box prote... 30 8.4
6TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box prote... 30 8.4

>GLSK_RAT (P13264) Glutaminase kidney isoform, mitochondrial precursor (EC|
           3.5.1.2) (GLS) (L-glutamine amidohydrolase)
           (K-glutaminase) [Contains: Glutaminase kidney isoform 68
           kDa chain; Glutaminase kidney isoform 65 kDa chain]
          Length = 674

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
 Frame = -2

Query: 513 RPNNGGSSALGMGSPFRFHLWRHINSGDGRTKTPLSPTVAGSEPHPFSMTHGLGGSSVQL 334
           RP  G   A G+ +  R H W     G GR K P S  ++ S P       G GG+  Q 
Sbjct: 37  RPRGGSRPAAGLVAAARLHPWW---GGGGRAKGPGSGGLS-SSPSEILQELGKGGTPPQQ 92

Query: 333 MESSRQSLGVYHSYSVG---SLGQMQ-FSSGRGQTTLQSRRSQSREDLTSSLADL 181
            +  +Q  G     + G   S G+   F +  G+  + +  ++ ++ L  SL DL
Sbjct: 93  QQQQQQQPGASPPAAPGPKDSPGETDAFGNSEGKEMVAAGDNKVKQGLLPSLEDL 147



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>GATA2_HUMAN (P23769) Endothelial transcription factor GATA-2 (GATA-binding|
           protein 2)
          Length = 480

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 504 NGGSSALGMGSPFRFHLWRHINSGDGRTKTPLSPTVAGSEPHPFSMTHGLGGSS 343
           +GG +AL   +    + W    +    +KTPL P+ AG    P S+  G GG S
Sbjct: 99  DGGKAALSAAAAHHHNPW----TVSPFSKTPLHPSAAGGPGGPLSVYPGAGGGS 148



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>PSTB_ALCFA (Q6WB51) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)|
           (Phosphate-transporting ATPase) (ABC phosphate
           transporter)
          Length = 291

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 428 PSPELICLHKWNLNGDPIPSAELPPLFGLKSGK*DLRNDLGMELLTHNI 574
           P+PE+I   +     DPI +A++  LF       DLR+D  + ++THN+
Sbjct: 204 PNPEIILFDEPTSALDPIATAKIEDLFT------DLRDDYTIVIVTHNM 246



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>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 366 THGLGGSSVQLMESSRQS--LGVYHSYSVGSLGQMQFSSGRGQTTLQSRRSQSREDLTSS 193
           T G   SS Q   SSRQS   G + S S  S G+ Q SSG GQ+    +R        SS
Sbjct: 380 TSGQASSSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSGQSPGHGQRGSGSGQSPSS 439



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>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 701

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = -2

Query: 495 SSALGMGSPFRFHLWRHINSGDGRTKTPLSPTVAGSEPHPFSMTHGLGGSSVQLMESSRQ 316
           +SA    +PF FHL +H+ +  G    P+ PT  G  P+P++       ++  L  +S  
Sbjct: 532 ASAASTAAPFPFHLSQHMLASQG---IPM-PTFGGLFPYPYTYMAAAAAAASALPATSAA 587

Query: 315 SLGVYHSYSVGSLGQMQF 262
           +     + + GSL +  F
Sbjct: 588 AAA---AAAAGSLSRSPF 602



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>TBX2_HUMAN (Q13207) T-box transcription factor TBX2 (T-box protein 2)|
          Length = 702

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = -2

Query: 495 SSALGMGSPFRFHLWRHINSGDGRTKTPLSPTVAGSEPHPFSMTHGLGGSSVQLMESSRQ 316
           +SA    +PF FHL +H+ +  G    P+ PT  G  P+P++       ++  L  +S  
Sbjct: 531 ASAASTAAPFPFHLSQHMLASQG---IPM-PTFGGLFPYPYTYMAAAAAAASALPATSAA 586

Query: 315 SLGVYHSYSVGSLGQMQF 262
           +     + + GSL +  F
Sbjct: 587 AAA---AAAAGSLSRSPF 601


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,453,360
Number of Sequences: 219361
Number of extensions: 2181116
Number of successful extensions: 4853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4849
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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