>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein|
           LL5-alpha)
          Length = 1377

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
 Frame = +2

Query: 92  IAPLPRATTCKRGVVREERKNEQQRRHAVPEQSVVSALXXXXXXSLRRRGPWFRVGELLA 271
           ++PLP  TT    + RE  ++ + RR A    S             R R P   +GE LA
Sbjct: 469 LSPLPTRTTPDPKLNREVAESPRPRRWAAHGASPEDFSLTLGARGRRTRSPSPTLGESLA 528

Query: 272 PVDSLF----SPPSSLCASHLTTAA*CGVPAQRRRPSS 373
           P    F    SP  SL    LT A+ C  P  +R+ SS
Sbjct: 529 PHKGSFSGRLSPAYSL--GSLTGASPCQSPCVQRKLSS 564

>AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein|
          Length = 1259

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +3

Query: 153 TSSRGGMPCPSRASFPRYDHRPLQACVVVVRGFESANSSPRSTL----YFHHLHLCVPPT 320
           +SSR   P  ++ + P   H P  +   +     S   S   TL    + HH ++  PPT
Sbjct: 405 SSSRSSTPAKTQPAPPHISHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHHPNMFAPPT 464

Query: 321 SLPPPNAVSQRS 356
           +LPPP  ++  S
Sbjct: 465 ALPPPPPLTSGS 476

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 25.0 bits (53), Expect(2) = 2.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 312  PPTSLPPPNAVSQRSAVAP 368
            PPTS PPP  ++    VAP
Sbjct: 2858 PPTSGPPPTYLTLEGGVAP 2876



 Score = 24.6 bits (52), Expect(2) = 2.6
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 359  RRPSSLLPLASIRRSAQPR-HASSKRASALQ 448
            RRP++  P+A+   SA+PR H +  R SA Q
Sbjct: 2882 RRPTTRQPVATPTTSARPRGHLTVSRLSAPQ 2912

>RPOA_ANTFO (Q85A01) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 340

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -2

Query: 652 FVSASSCMFHFHLFMGKKNKQETLLGRRSVEVWTSSPSEPYNMNYSILSIVSNKFIELGH 473
           F    +  +  H F  +K KQE L     +EVWT+    P          + N FI L H
Sbjct: 176 FTPIRNANYSVHSFENEKEKQEILF----IEVWTNGSLTPKEALREASQSLINLFIPLLH 231

Query: 472 KKE 464
           +K+
Sbjct: 232 EKK 234

>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 255  SANSSPRSTLYFHHLHLCVPPTSLPPPN 338
            S N  P   L+ HH HL   P ++PPPN
Sbjct: 1106 SINLPPPPNLHGHHHHLPFAPGTIPPPN 1133

>Y509_MYCBO (P64718) Hypothetical protein Mb0509 precursor|
          Length = 280

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = +3

Query: 144 KERTSSRGGMPCPSRASF-PRYD-------HRPLQACVVVVRGFESANSSPRSTLYFHHL 299
           +ER   RGG P P+ ++F P YD       H  L        G +S + + R      HL
Sbjct: 150 RERMRKRGGGPGPAISAFAPSYDPLDGNHAHYTLDLSHTATAGTDSLDMARRMGPGLVHL 209

Query: 300 HLC 308
           HLC
Sbjct: 210 HLC 212

>Y498_MYCTU (P64717) Hypothetical protein Rv0498/MT0518 precursor|
          Length = 280

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
 Frame = +3

Query: 144 KERTSSRGGMPCPSRASF-PRYD-------HRPLQACVVVVRGFESANSSPRSTLYFHHL 299
           +ER   RGG P P+ ++F P YD       H  L        G +S + + R      HL
Sbjct: 150 RERMRKRGGGPGPAISAFAPSYDPLDGNHAHYTLDLSHTATAGTDSLDMARRMGPGLVHL 209

Query: 300 HLC 308
           HLC
Sbjct: 210 HLC 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,191,512
Number of Sequences: 219361
Number of extensions: 1883742
Number of successful extensions: 5637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5627
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)