ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11e03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 428 aaaagagccagtgcgttgcaacaggtaaa 456 ||||| ||||||||||||||||||||||| Sbjct: 14992203 aaaagtgccagtgcgttgcaacaggtaaa 14992175
>gb|AC084022.10| Oryza sativa chromosome 3 BAC OSJNBa0011H24 genomic sequence, complete sequence Length = 137184 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 428 aaaagagccagtgcgttgcaacaggtaaa 456 ||||| ||||||||||||||||||||||| Sbjct: 50559 aaaagtgccagtgcgttgcaacaggtaaa 50587
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 428 aaaagagccagtgcgttgcaacaggtaaa 456 ||||| ||||||||||||||||||||||| Sbjct: 14986737 aaaagtgccagtgcgttgcaacaggtaaa 14986709
>emb|X52103.1|TAEMG T.aestivum Em gene Length = 2465 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 423 ctagcaaaagagccagtgcgttgcaac 449 |||||||||||||| |||||||||||| Sbjct: 71 ctagcaaaagagcccgtgcgttgcaac 97
>gb|AY320035.2| Bacteriophage VWB, complete genome Length = 49220 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 tcccagcgcagcgccgtcgcc 365 ||||||||||||||||||||| Sbjct: 774 tcccagcgcagcgccgtcgcc 794
>gb|AC114679.10| Mus musculus chromosome 3, clone RP24-235E22, complete sequence Length = 157152 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 33457 ggagggtctcttgtttgtttt 33477
>gb|AC125670.4| Rattus norvegicus BAC CH230-113E22 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 103836 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttta 473 ||||||||||||||||||||| Sbjct: 53571 taaacaaataattctttttta 53551
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 ccgtgcccgagcagagcgtcgtttc 198 |||||||||||| |||||||||||| Sbjct: 2944620 ccgtgcccgagccgagcgtcgtttc 2944644
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 ccgtgcccgagcagagcgtcgtttc 198 |||||||||||| |||||||||||| Sbjct: 72055 ccgtgcccgagccgagcgtcgtttc 72079
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1112E06, complete sequence Length = 177488 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 cagtgcgttgcaacaggtaaa 456 ||||||||||||||||||||| Sbjct: 108044 cagtgcgttgcaacaggtaaa 108024
>gb|AC135860.4| Mus musculus BAC clone RP24-441J10 from chromosome 7, complete sequence Length = 196609 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 aataattcttttttatgtcct 479 ||||||||||||||||||||| Sbjct: 163178 aataattcttttttatgtcct 163158
>gb|AC005065.1| Homo sapiens BAC clone CTB-114B19 from 7, complete sequence Length = 83928 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 444 tgcaacaggtaaacaaataattctttttt 472 |||||||||| |||||| ||||||||||| Sbjct: 2335 tgcaacaggtcaacaaagaattctttttt 2363
>ref|XM_980196.1| PREDICTED: Mus musculus latrophilin 2, transcript variant 2 (Lphn2), mRNA Length = 3304 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 2029 ggagggtctcttgtttgtttt 2009
>ref|XM_980154.1| PREDICTED: Mus musculus latrophilin 2, transcript variant 1 (Lphn2), mRNA Length = 2421 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 1146 ggagggtctcttgtttgtttt 1126
>ref|XM_980234.1| PREDICTED: Mus musculus latrophilin 2, transcript variant 3 (Lphn2), mRNA Length = 3302 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 2027 ggagggtctcttgtttgtttt 2007
>ref|XM_980272.1| PREDICTED: Mus musculus latrophilin 2, transcript variant 4 (Lphn2), mRNA Length = 4090 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 2815 ggagggtctcttgtttgtttt 2795
>ref|XM_980356.1| PREDICTED: Mus musculus latrophilin 2, transcript variant 6 (Lphn2), mRNA Length = 6181 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 4906 ggagggtctcttgtttgtttt 4886
>ref|XM_980315.1| PREDICTED: Mus musculus latrophilin 2, transcript variant 5 (Lphn2), mRNA Length = 6433 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 5158 ggagggtctcttgtttgtttt 5138
>ref|XM_990232.1| PREDICTED: Mus musculus latrophilin 2 (Lphn2), mRNA Length = 5712 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 4437 ggagggtctcttgtttgtttt 4417
>ref|XM_897725.2| PREDICTED: Mus musculus latrophilin 2, transcript variant 5 (Lphn2), mRNA Length = 3304 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 2029 ggagggtctcttgtttgtttt 2009
>ref|XM_897770.2| PREDICTED: Mus musculus latrophilin 2, transcript variant 10 (Lphn2), mRNA Length = 2421 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 1146 ggagggtctcttgtttgtttt 1126
>ref|XM_897790.2| PREDICTED: Mus musculus latrophilin 2, transcript variant 12 (Lphn2), mRNA Length = 3302 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 2027 ggagggtctcttgtttgtttt 2007
>ref|XM_897800.2| PREDICTED: Mus musculus latrophilin 2, transcript variant 13 (Lphn2), mRNA Length = 4090 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 2815 ggagggtctcttgtttgtttt 2795
>ref|XM_897704.2| PREDICTED: Mus musculus latrophilin 2, transcript variant 3 (Lphn2), mRNA Length = 5800 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 4525 ggagggtctcttgtttgtttt 4505
>ref|XM_888040.2| PREDICTED: Mus musculus latrophilin 2, transcript variant 2 (Lphn2), mRNA Length = 6052 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 4777 ggagggtctcttgtttgtttt 4757
>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome Length = 143171 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 aacaaataattcttttttatg 475 ||||||||||||||||||||| Sbjct: 103849 aacaaataattcttttttatg 103869
>emb|Z81056.1|CEF09F3 Caenorhabditis elegans Cosmid F09F3, complete sequence Length = 33429 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 tcaatgaatttatttgaaaca 503 ||||||||||||||||||||| Sbjct: 26730 tcaatgaatttatttgaaaca 26710
>gb|BC026898.1| Mus musculus latrophilin 2, mRNA (cDNA clone IMAGE:3987429), with apparent retained intron Length = 2165 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 1146 ggagggtctcttgtttgtttt 1126
>gb|AC121805.3| Mus musculus BAC clone RP23-443L2 from chromosome 10, complete sequence Length = 194006 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttta 473 ||||||||||||||||||||| Sbjct: 21079 taaacaaataattctttttta 21059
>gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome 7, complete sequence Length = 185494 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 aataattcttttttatgtcct 479 ||||||||||||||||||||| Sbjct: 15598 aataattcttttttatgtcct 15578
>ref|XM_725783.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02923) partial mRNA Length = 1131 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 aaacaaataattcttttttat 474 ||||||||||||||||||||| Sbjct: 1036 aaacaaataattcttttttat 1016
>gb|AC124336.10| Mus musculus chromosome 18, clone RP24-125A2, complete sequence Length = 193807 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 448 acaggtaaacaaataattctttttt 472 ||||||||||| ||||||||||||| Sbjct: 51253 acaggtaaacacataattctttttt 51277
>ref|XM_673918.1| Plasmodium berghei strain ANKA lysophospholipase-like protein, (PB001082.03.0) partial mRNA Length = 1134 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 aaacaaataattcttttttat 474 ||||||||||||||||||||| Sbjct: 1036 aaacaaataattcttttttat 1016
>emb|X17191.1|CHEGRPO E.gracilis chloroplast RNA polymerase rpoB-rpoC1-rpoC2 operon Length = 12840 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 aacaaataattcttttttatg 475 ||||||||||||||||||||| Sbjct: 11865 aacaaataattcttttttatg 11845
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 ccgtgcccgagcagagcgtcgtttc 198 |||||||||||| |||||||||||| Sbjct: 3917657 ccgtgcccgagccgagcgtcgtttc 3917681
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1005_B10 Length = 142680 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 agcaaaagagccagtgcgttgcaac 449 |||||||||||| |||||||||||| Sbjct: 96856 agcaaaagagcccgtgcgttgcaac 96832
>gb|AC155830.7| Mus musculus 10 BAC RP24-495I3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189267 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttta 473 ||||||||||||||||||||| Sbjct: 183086 taaacaaataattctttttta 183066
>ref|NM_074037.1| Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-175) (nhr-175) mRNA, complete cds Length = 1197 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 tcaatgaatttatttgaaaca 503 ||||||||||||||||||||| Sbjct: 1151 tcaatgaatttatttgaaaca 1131
>dbj|AK034430.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330190G13 product:CALCIUM-INDEPENDENT ALPHA-LATROTOXIN RECEPTOR 2 PRECURSOR (LATROPHILIN 2) (LRP2) (CIRL) (CL2) (LPH2) homolog [Rattus norvegicus], full insert sequence Length = 3005 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 1727 ggagggtctcttgtttgtttt 1707
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 cagtgcgttgcaacaggtaaa 456 ||||||||||||||||||||| Sbjct: 23517358 cagtgcgttgcaacaggtaaa 23517338
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 agcaaaagagccagtgcgttgcaac 449 |||||||||||| |||||||||||| Sbjct: 18709410 agcaaaagagcccgtgcgttgcaac 18709386 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 agtgcgttgcaacaggtaaa 456 |||||||||||||||||||| Sbjct: 39973955 agtgcgttgcaacaggtaaa 39973974
>gb|AC018667.7| Homo sapiens BAC clone RP11-10J9 from 2, complete sequence Length = 91377 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 tcttgtttgtttttcttcccc 608 ||||||||||||||||||||| Sbjct: 72589 tcttgtttgtttttcttcccc 72569
>gb|AC021049.12| Homo sapiens 12 BAC RP11-904M10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175315 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 tcttgtttgtttttcttcccc 608 ||||||||||||||||||||| Sbjct: 147692 tcttgtttgtttttcttcccc 147672
>gb|AC107066.2| Homo sapiens BAC clone RP11-2M10 from 2, complete sequence Length = 113596 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 tcttgtttgtttttcttcccc 608 ||||||||||||||||||||| Sbjct: 47740 tcttgtttgtttttcttcccc 47760
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1249E06 Length = 126534 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 agcaaaagagccagtgcgttgcaac 449 |||||||||||| |||||||||||| Sbjct: 30927 agcaaaagagcccgtgcgttgcaac 30903
>dbj|AP003276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0516D04 Length = 140491 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 425 agcaaaagagccagtgcgttgcaac 449 |||||||||||| |||||||||||| Sbjct: 132683 agcaaaagagcccgtgcgttgcaac 132659
>emb|AL845323.18| Mouse DNA sequence from clone RP23-304D11 on chromosome 2, complete sequence Length = 228137 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 ggaagaaagaaagaacgagca 159 ||||||||||||||||||||| Sbjct: 67964 ggaagaaagaaagaacgagca 67984
>dbj|AK129215.1| Mus musculus mRNA for mKIAA0786 protein Length = 3995 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 2991 ggagggtctcttgtttgtttt 2971
>gb|AC156502.2| Mus musculus BAC clone RP23-355N1 from 9, complete sequence Length = 204883 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttta 473 ||||||||||||||||||||| Sbjct: 103813 taaacaaataattctttttta 103793
>gb|AC113315.8| Mus musculus chromosome 3, clone RP23-441B22, complete sequence Length = 187126 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 163748 ggagggtctcttgtttgtttt 163768
>gb|BC023063.1| Mus musculus latrophilin 2, mRNA (cDNA clone IMAGE:5355487), with apparent retained intron Length = 933 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 519 ggagggtctcttgtttgtttt 499
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 ccgtgcccgagcagagcgtcgtttc 198 |||||||||||| |||||||||||| Sbjct: 3621430 ccgtgcccgagccgagcgtcgtttc 3621454
>emb|CT033793.10| Mouse DNA sequence from clone RP23-21O10 on chromosome 9, complete sequence Length = 212761 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttta 473 ||||||||||||||||||||| Sbjct: 121870 taaacaaataattctttttta 121850
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 cagtgcgttgcaacaggtaaa 456 ||||||||||||||||||||| Sbjct: 23827294 cagtgcgttgcaacaggtaaa 23827274
>gb|BC034660.1| Mus musculus latrophilin 2, mRNA (cDNA clone IMAGE:5361503), complete cds Length = 1493 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 580 ggagggtctcttgtttgtttt 600 ||||||||||||||||||||| Sbjct: 1079 ggagggtctcttgtttgtttt 1059
>emb|AL845161.5| Mouse DNA sequence from clone RP23-214I20 on chromosome 2, complete sequence Length = 233212 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 453 taaacaaataattctttttta 473 ||||||||||||||||||||| Sbjct: 172110 taaacaaataattctttttta 172130
>gb|AC126606.16| Mus musculus chromosome 1, clone RP24-68C1, complete sequence Length = 192150 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 aaacaaataattctttttta 473 |||||||||||||||||||| Sbjct: 69089 aaacaaataattctttttta 69108
>gb|AC152985.1| Mus musculus 6 BAC RP23-118B18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194298 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 590 ttgtttgtttttcttcccca 609 |||||||||||||||||||| Sbjct: 129127 ttgtttgtttttcttcccca 129146
>gb|AC152944.2| Mus musculus 10 BAC RP23-427I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179149 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 140852 taaacaaataattctttttt 140833
>gb|AC169675.2| Mus musculus BAC clone RP24-200J3 from chromosome 17, complete sequence Length = 171242 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 586 tctcttgtttgtttttcttcccca 609 |||||||||| ||||||||||||| Sbjct: 70477 tctcttgtttctttttcttcccca 70454
>gb|AC110509.21| Mus musculus chromosome 8, clone RP24-423G4, complete sequence Length = 190160 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 accaccgccccctccaagct 227 |||||||||||||||||||| Sbjct: 179896 accaccgccccctccaagct 179877
>gb|AC147708.7| Canis Familiaris, clone XX-25G10, complete sequence Length = 185084 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 ccaccttcatctttgtgtgc 312 |||||||||||||||||||| Sbjct: 50911 ccaccttcatctttgtgtgc 50892
>gb|AC135636.4| Mus musculus BAC clone RP23-268G16 from chromosome 18, complete sequence Length = 160531 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 529 tatatggttctgaaggagaggatg 552 |||||||| ||||||||||||||| Sbjct: 152818 tatatggtgctgaaggagaggatg 152795
>gb|AC158316.3| Mus musculus chromosome 8, clone RP23-189N8, complete sequence Length = 183192 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 accaccgccccctccaagct 227 |||||||||||||||||||| Sbjct: 153467 accaccgccccctccaagct 153486
>gb|AC024914.48| Mus musculus BAC Clone 262c6 RPCI-23, complete sequence Length = 205922 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 117977 taaacaaataattctttttt 117996
>gb|AC161257.2| Mus musculus BAC clone RP24-91A16 from chromosome 9, complete sequence Length = 245088 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 90760 taaacaaataattctttttt 90779
>gb|AC129324.4| Mus musculus BAC clone RP23-253G24 from chromosome 18, complete sequence Length = 166990 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 529 tatatggttctgaaggagaggatg 552 |||||||| ||||||||||||||| Sbjct: 18179 tatatggtgctgaaggagaggatg 18156
>emb|CR848816.11| Zebrafish DNA sequence from clone DKEY-99F10 in linkage group 11, complete sequence Length = 158354 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 tttatttgaaacaatgcttaatat 514 ||||||||||| |||||||||||| Sbjct: 151656 tttatttgaaaaaatgcttaatat 151633
>emb|CR853302.11| Zebrafish DNA sequence from clone DKEY-91M3 in linkage group 11, complete sequence Length = 231837 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 aacaaataattcttttttat 474 |||||||||||||||||||| Sbjct: 222159 aacaaataattcttttttat 222178
>gb|AC130217.4| Mus musculus BAC clone RP23-237P18 from chromosome 13, complete sequence Length = 198116 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 caacctcctgctctaggtca 92 |||||||||||||||||||| Sbjct: 125194 caacctcctgctctaggtca 125175
>gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence Length = 191669 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 164164 taaacaaataattctttttt 164183
>gb|AC117248.3| Mus musculus BAC clone RP24-345A14 from chromosome 9, complete sequence Length = 185810 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 4791 taaacaaataattctttttt 4772
>gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, complete sequence Length = 199474 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 gtcgactctctattttcacc 294 |||||||||||||||||||| Sbjct: 38175 gtcgactctctattttcacc 38194
>ref|XM_643769.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (378.t00002) partial mRNA Length = 3738 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 acaaataattcttttttatg 475 |||||||||||||||||||| Sbjct: 1626 acaaataattcttttttatg 1645
>ref|XM_646074.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (179.t00012) partial mRNA Length = 1788 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 aataattcttttttatgtcc 478 |||||||||||||||||||| Sbjct: 1295 aataattcttttttatgtcc 1276
>gb|AC119803.10| Mus musculus chromosome 6, clone RP23-124H21, complete sequence Length = 197762 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 aaacaaataattctttttta 473 |||||||||||||||||||| Sbjct: 96797 aaacaaataattctttttta 96816
>gb|AC110157.7| Mus musculus chromosome 14, clone RP23-151K23, complete sequence Length = 243114 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 78323 taaacaaataattctttttt 78342
>gb|AC116123.7| Mus musculus chromosome 6, clone RP23-87I4, complete sequence Length = 205411 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 ttgtttgtttttcttcccca 609 |||||||||||||||||||| Sbjct: 184114 ttgtttgtttttcttcccca 184095
>emb|AL591102.7| Human DNA sequence from clone RP11-290F12 on chromosome 6, complete sequence Length = 45700 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 ggtctcttgtttgtttttct 603 |||||||||||||||||||| Sbjct: 4443 ggtctcttgtttgtttttct 4424
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 gcatgccgtgcccgagcaga 188 |||||||||||||||||||| Sbjct: 4462491 gcatgccgtgcccgagcaga 4462472
>emb|CR293530.22| Zebrafish DNA sequence from clone CH211-129C13 in linkage group 1, complete sequence Length = 179015 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ttttcaccaccttcatcttt 306 |||||||||||||||||||| Sbjct: 96597 ttttcaccaccttcatcttt 96578
>emb|AL662779.10| Mouse DNA sequence from clone RP23-177A4 on chromosome 11 Contains the Kif2b gene for kinesin family member 28, complete sequence Length = 231926 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 588 tcttgtttgtttttcttccccatg 611 |||||||| ||||||||||||||| Sbjct: 12683 tcttgtttctttttcttccccatg 12706
>emb|AL606511.8| Mouse DNA sequence from clone RP23-262C6 on chromosome 13 Contains the Sox4 gene for SRY-box containing protein 4, a novel gene and two CpG islands, complete sequence Length = 154685 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 36583 taaacaaataattctttttt 36564
>emb|BX510646.5| Zebrafish DNA sequence from clone CH211-221B16 in linkage group 9, complete sequence Length = 200321 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 586 tctcttgtttgtttttcttc 605 |||||||||||||||||||| Sbjct: 97107 tctcttgtttgtttttcttc 97126
>emb|BX571949.19| Zebrafish DNA sequence from clone DKEY-25F1 in linkage group 11, complete sequence Length = 149012 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 491 tttatttgaaacaatgcttaatat 514 ||||||||||| |||||||||||| Sbjct: 34678 tttatttgaaaaaatgcttaatat 34701
>emb|BX890597.13| Zebrafish DNA sequence from clone DKEY-65F8, complete sequence Length = 244779 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 cagaggaggcatgccgtgcc 180 |||||||||||||||||||| Sbjct: 127840 cagaggaggcatgccgtgcc 127821
>emb|BX530068.35| Zebrafish DNA sequence from clone CH211-1N9 in linkage group 13, complete sequence Length = 185626 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cagaggaggcatgccgtgcc 180 |||||||||||||||||||| Sbjct: 19877 cagaggaggcatgccgtgcc 19896
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 tcggcgaactcctcgccccggtcg 278 ||||||| |||||||||||||||| Sbjct: 4289291 tcggcgatctcctcgccccggtcg 4289268
>ref|XM_682882.1| PREDICTED: Danio rerio similar to DNA2-like homolog (DNA replication helicase-like homolog) (LOC559535), mRNA Length = 3846 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cagaggaggcatgccgtgcc 180 |||||||||||||||||||| Sbjct: 3032 cagaggaggcatgccgtgcc 3051
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 cccagcgcagcgccgtcgcc 365 |||||||||||||||||||| Sbjct: 2818240 cccagcgcagcgccgtcgcc 2818259
>gb|AC008571.6| Homo sapiens chromosome 5 clone CTC-550M4, complete sequence Length = 214267 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 589 cttgtttgtttttcttcccc 608 |||||||||||||||||||| Sbjct: 195159 cttgtttgtttttcttcccc 195178
>gb|AC018897.4|AC018897 Homo sapiens BAC clone RP11-575J11 from 11, complete sequence Length = 164472 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 593 tttgtttttcttccccatgaaaag 616 ||||||||| |||||||||||||| Sbjct: 75284 tttgttttttttccccatgaaaag 75307
>gb|AC023118.4|AC023118 Homo sapiens BAC clone RP11-277L22 from 11, complete sequence Length = 154330 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 tattgaataattcatgttat 531 |||||||||||||||||||| Sbjct: 5473 tattgaataattcatgttat 5454
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 tagcaaaagagccagtgcgttgcaacag 451 ||||||||| ||| |||||||||||||| Sbjct: 23519890 tagcaaaagtgcctgtgcgttgcaacag 23519863
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 agtgcgttgcaacaggtaaa 456 |||||||||||||||||||| Sbjct: 65406 agtgcgttgcaacaggtaaa 65425
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 424 tagcaaaagagccagtgcgttgcaacag 451 ||||||||| ||| |||||||||||||| Sbjct: 85573 tagcaaaagtgcctgtgcgttgcaacag 85546
>emb|BX005382.6| Zebrafish DNA sequence from clone DKEY-242E14, complete sequence Length = 161366 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 aacaaataattcttttttat 474 |||||||||||||||||||| Sbjct: 158024 aacaaataattcttttttat 158043
>gb|AC101935.10| Mus musculus chromosome 15, clone RP24-76H22, complete sequence Length = 216277 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 510 aatattgaataattcatgttatat 533 |||||| ||||||||||||||||| Sbjct: 153905 aatattaaataattcatgttatat 153928
>dbj|AP002984.3| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2198F5, complete sequence Length = 153042 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 593 tttgtttttcttccccatgaaaag 616 ||||||||| |||||||||||||| Sbjct: 132874 tttgttttttttccccatgaaaag 132897
>dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-682K9, complete sequence Length = 197847 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 512 tattgaataattcatgttat 531 |||||||||||||||||||| Sbjct: 172808 tattgaataattcatgttat 172789
>gb|AC153853.4| Mus musculus BAC RP23-341J13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194037 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 aaacaaataattctttttta 473 |||||||||||||||||||| Sbjct: 120184 aaacaaataattctttttta 120165
>emb|AL845278.19| Mouse DNA sequence from clone RP23-37H22 on chromosome 2, complete sequence Length = 123883 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tctctattttcaccaccttc 300 |||||||||||||||||||| Sbjct: 73617 tctctattttcaccaccttc 73636
>emb|BX005053.5| Mouse DNA sequence from clone RP23-35D18 on chromosome 4, complete sequence Length = 186734 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 taaacaaataattctttttt 472 |||||||||||||||||||| Sbjct: 160901 taaacaaataattctttttt 160882
>gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, complete sequence Length = 163028 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 gtcgactctctattttcacc 294 |||||||||||||||||||| Sbjct: 54314 gtcgactctctattttcacc 54295
>gb|U89935.1|CVU89935 Cloning vector pBI-GL, complete sequence Length = 9492 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 tattgaataattcatgttatatgg 535 ||||||| |||||||||||||||| Sbjct: 4120 tattgaaaaattcatgttatatgg 4143
>gb|U89934.1|CVU89934 Cloning vector pBI-L, complete sequence Length = 6083 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 tattgaataattcatgttatatgg 535 ||||||| |||||||||||||||| Sbjct: 711 tattgaaaaattcatgttatatgg 734
>gb|U89933.1|CVU89933 Cloning vector pBI-G, complete sequence Length = 7727 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 tattgaataattcatgttatatgg 535 ||||||| |||||||||||||||| Sbjct: 4065 tattgaaaaattcatgttatatgg 4088
>gb|U89932.1|CVU89932 Cloning vector pBI, complete sequence Length = 4358 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 512 tattgaataattcatgttatatgg 535 ||||||| |||||||||||||||| Sbjct: 696 tattgaaaaattcatgttatatgg 719
>gb|AC171111.2| Mus musculus BAC clone RP24-131J20 from chromosome 17, complete sequence Length = 167872 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 586 tctcttgtttgtttttcttcccca 609 |||||||||| ||||||||||||| Sbjct: 12765 tctcttgtttctttttcttcccca 12742
>dbj|AP003037.2| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2331C18, complete sequences Length = 121567 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctctaggtcattgctcctct 102 |||||||||||||||||||| Sbjct: 2085 ctctaggtcattgctcctct 2104 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,452,303 Number of Sequences: 3902068 Number of extensions: 8452303 Number of successful extensions: 212538 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 211540 Number of HSP's gapped (non-prelim): 998 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
