ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UPTG_PEA (O04300) Alpha-1,4-glucan-protein synthase [UDP-forming... 37 0.012
2UPTG2_SOLTU (Q8RU27) Alpha-1,4-glucan-protein synthase [UDP-form... 36 0.026
3Y924_DESVH (Q72DK5) Hypothetical RNA methyltransferase DVU0924 (... 28 5.5
4RFCL_NATPD (Q3ISA5) Replication factor C large subunit (RFC larg... 28 7.2
5CO3_NAJNA (Q01833) Cobra venom factor precursor (CVF) (Complemen... 28 7.2
6PRMA_BORPA (Q7W3W2) Ribosomal protein L11 methyltransferase (EC ... 28 7.2
7PRMA_BORBR (Q7WF92) Ribosomal protein L11 methyltransferase (EC ... 28 7.2
8CHS1_RHIOL (P30594) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP ... 25 8.7

>UPTG_PEA (O04300) Alpha-1,4-glucan-protein synthase [UDP-forming] (EC|
           2.4.1.112) (UDP-glucose:protein transglucosylase) (UPTG)
           (Reversibly glycosylated polypeptide)
          Length = 364

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 361 FESLKLSRTAVTVDDCIKELAGIVRQKLAPKNAIFSKXXDAMEEWTKLW 215
           F++  LS+   +V  C  EL+  V++KL   +  F K  DAM  W + W
Sbjct: 293 FQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAW 341



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>UPTG2_SOLTU (Q8RU27) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 (EC|
           2.4.1.112) (UDP-glucose:protein transglucosylase 2)
           (UPTG 2)
          Length = 366

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 358 ESLKLSRTAVTVDDCIKELAGIVRQKLAPKNAIFSKXXDAMEEWTKLW 215
           +S  L +   +V  C  EL+  V++KL+  +  F+K  DAM  W + W
Sbjct: 295 QSATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAW 342



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>Y924_DESVH (Q72DK5) Hypothetical RNA methyltransferase DVU0924 (EC 2.1.1.-)|
          Length = 468

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +1

Query: 208 EISRAWSIPPW----HRXXWRRLHSSAPASASQC 297
           +I+RA  +P W    HR  WR L    PA   QC
Sbjct: 178 DIARASGLPGWDDAAHRGFWRFLVVREPARGGQC 211



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>RFCL_NATPD (Q3ISA5) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit)
          Length = 483

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 256 SKXXDAMEEWTKLWKSH 206
           +K  DA EEW K W+ H
Sbjct: 20  NKARDAFEEWAKAWEDH 36



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>CO3_NAJNA (Q01833) Cobra venom factor precursor (CVF) (Complement C3 homolog)|
           [Contains: Cobra venom factor alpha chain; Cobra venom
           factor gamma chain; Cobra venom factor beta chain]
          Length = 1651

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 12  VLESYTNRTPGSLNVYIHKFPSHGNTXYSA 101
           ++E++ + TP SL++++H FP    T + +
Sbjct: 42  LVEAHGDSTPKSLDIFVHDFPRKQKTLFQS 71



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>PRMA_BORPA (Q7W3W2) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 307

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 163 WIKWTQSSIRRSELHEISRAWSIPPWHR 246
           W++ TQS      + E  R W +P WHR
Sbjct: 102 WVRLTQSQFGPIPISE--RLWIVPSWHR 127



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>PRMA_BORBR (Q7WF92) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 307

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 163 WIKWTQSSIRRSELHEISRAWSIPPWHR 246
           W++ TQS      + E  R W +P WHR
Sbjct: 102 WVRLTQSQFGPIPISE--RLWIVPSWHR 127



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>CHS1_RHIOL (P30594) Chitin synthase 1 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 1)
          Length = 858

 Score = 24.6 bits (52), Expect(2) = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 206 WSSERLILDCVHFIHQDTY 150
           WSS   IL C+ F+ +D Y
Sbjct: 517 WSSNHNILRCIMFMFEDLY 535



 Score = 21.2 bits (43), Expect(2) = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 304 LAGIVRQKLAPKNAIFSKXXDAMEEWTKLWKSH 206
           +A  + Q+    N  F     +M  W+K+W S+
Sbjct: 488 VAEFISQRRRWLNGSFFAGIYSMVHWSKVWSSN 520


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,829,572
Number of Sequences: 219361
Number of extensions: 810188
Number of successful extensions: 1718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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