ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11d24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y18625.1|TAE18625 Triticum aestivum mRNA for amylogenin Length = 1903 Score = 478 bits (241), Expect = e-132 Identities = 332/359 (92%), Gaps = 4/359 (1%) Strand = Plus / Minus Query: 1 tggtatacacggttcttgagtcatacacaaaccgaacgcctggttcactaaatgt-ctac 59 |||||||||||||||||||| |||||||||||||||| ||||| |||| |||| |||| Sbjct: 1789 tggtatacacggttcttgag-catacacaaaccgaacacctggca-actacatgttctac 1732 Query: 60 atacacaaattcccctcacacggaaatactgnttattcagctgcatcataacagngcata 119 || ||||||||||||||||||||||| | || |||||||||||||||||||||| ||||| Sbjct: 1731 at-cacaaattcccctcacacggaaacattgtttattcagctgcatcataacagtgcata 1673 Query: 120 tggaaattttaaagnccaagaagaagaaaaataagtatcttgatggataaaatggacaca 179 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1672 tggaaattttaaagtccaagaagaagaaaaataagtatcttgatggataaaatggacgca 1613 Query: 180 gtccagtattaggcgttctgagctccatgagatttccagagcttggtccattcctccatg 239 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1612 gtccagtattacgcgttctgagctccatgagatttccagagcttggtccattcctccatg 1553 Query: 240 gcatcggnggntttggagaagattgcattcttcggcgccagcttctgcctcacaatgccg 299 |||||| | ||||| ||||||||||||||| ||||||||||||||| |||||||||| Sbjct: 1552 acatcggcagctttggcgaagattgcattctttggcgccagcttctgcttcacaatgcca 1493 Query: 300 gctagctccttaatgcaatcatcgacagtaactgcggtcctngaaagcttgagcgactc 358 ||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 1492 gctagctccttaacgcagtcatcgacagtaactgcggtccttgatagcttgagcgactc 1434
>gb|BT017433.1| Zea mays clone EL01N0403E12.c mRNA sequence Length = 1110 Score = 91.7 bits (46), Expect = 1e-15 Identities = 133/163 (81%) Strand = Plus / Minus Query: 195 ttctgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttg 254 |||||||| ||||| ||||||||| ||| |||||||| |||||||||||| | |||| Sbjct: 851 ttctgagcaccatgcactttccagagattgttccattccaccatggcatcggctgctttg 792 Query: 255 gagaagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatg 314 | ||||||||||||||| || | || |||| | ||||| || || |||||||||| Sbjct: 791 gtgaagattgcattcttaggtcctagtttctcacggacaattccagcaagctccttaaca 732 Query: 315 caatcatcgacagtaactgcggtcctngaaagcttgagcgact 357 ||||| || ||||||||||| ||||| || ||||||||||||| Sbjct: 731 caatcgtcaacagtaactgcagtcctcgatagcttgagcgact 689
>ref|XM_474209.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 1034 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 975 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 974 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 915 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 914 tcttcaacagtaactg 899
>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02, complete sequence Length = 153623 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 91246 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 91187 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 91186 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 91127 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 91126 tcttcaacagtaactg 91111
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 171990 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 171931 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 171930 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 171871 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 171870 tcttcaacagtaactg 171855
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 33740803 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 33740744 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 33740743 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 33740684 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 33740683 tcttcaacagtaactg 33740668
>emb|AJ011079.1|OSP011079 Oryza sativa mRNA for RGP2 protein, partial Length = 1238 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 1045 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 986 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 985 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 926 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 925 tcttcaacagtaactg 910
>dbj|AK104316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H07, full insert sequence Length = 1616 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 1430 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 1371 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 1370 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 1311 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 1310 tcttcaacagtaactg 1295
>dbj|AK071012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079O10, full insert sequence Length = 1745 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 1514 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 1455 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 1454 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 1395 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 1394 tcttcaacagtaactg 1379
>dbj|AK058644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-E07, full insert sequence Length = 1422 Score = 83.8 bits (42), Expect = 4e-13 Identities = 112/136 (82%) Strand = Plus / Minus Query: 198 tgagctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggag 257 |||||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | | Sbjct: 1236 tgagctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcg 1177 Query: 258 aagattgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaa 317 ||||||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || Sbjct: 1176 aagattgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacag 1117 Query: 318 tcatcgacagtaactg 333 || || |||||||||| Sbjct: 1116 tcttcaacagtaactg 1101
>emb|Y18623.1|OSA18623 Oryza sativa mRNA for amylogenin Length = 1157 Score = 77.8 bits (39), Expect = 2e-11 Identities = 109/133 (81%) Strand = Plus / Minus Query: 201 gctccatgagatttccagagcttggtccattcctccatggcatcggnggntttggagaag 260 ||||| |||||||||||||| ||||||||||||||||| ||||| | | ||| | |||| Sbjct: 1045 gctccgtgagatttccagagtttggtccattcctccattgcatcagcagctttagcgaag 986 Query: 261 attgcattcttcggcgccagcttctgcctcacaatgccggctagctccttaatgcaatca 320 |||||||||| ||| |||| |||| | | ||||||| || ||| ||||||| || || Sbjct: 985 attgcattctgcggtcccagtttctccttgacaatgctggttagttccttaacacagtct 926 Query: 321 tcgacagtaactg 333 || |||||||||| Sbjct: 925 tcaacagtaactg 913
>gb|AC091296.3| Pan troglodytes clone RP43-109G19, complete sequence Length = 185979 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 tggataaaatggacacagtcc 183 ||||||||||||||||||||| Sbjct: 157387 tggataaaatggacacagtcc 157367
>gb|AC005231.3| Homo sapiens PAC clone RP5-1186P10 from 7, complete sequence Length = 102112 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 tggataaaatggacacagtcc 183 ||||||||||||||||||||| Sbjct: 71223 tggataaaatggacacagtcc 71243
>gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, complete sequence Length = 196544 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 aagaagaaaaataagtatctt 160 ||||||||||||||||||||| Sbjct: 8813 aagaagaaaaataagtatctt 8793 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 aagaagaaaaataagtatctt 160 ||||||||||||||||||||| Sbjct: 7037 aagaagaaaaataagtatctt 7057
>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete sequence Length = 203967 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 cgccagcttctgcctcacaa 294 |||||||||||||||||||| Sbjct: 10668 cgccagcttctgcctcacaa 10687
>emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on chromosome 9 Contains the 3' end of the FGD3 gene for FGD1 family, member 3 (FLJ00004), a novel gene, a novel gene (MGC26847), a novel gene (MGC11115), the NINJ1 gene for ninjurin 1 and three CpG islands, complete sequence Length = 163689 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 taaaatggacacagtccagt 186 |||||||||||||||||||| Sbjct: 80252 taaaatggacacagtccagt 80233
>emb|AL360176.22| Human DNA sequence from clone RP11-124H7 on chromosome 10 Contains the 5' end of the MMP21 gene for matrix metalloproteinase 21, the UROS gene for uroporphyrinogen III synthase (congenital erythropoietic porphyria), the BCCIP gene for BRCA2 and CDKN1A interacting protein (TOK-1), the DDX32 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32 (FLJ10694, FLJ10889), the 5' UTR of a novel gene (LOC92565) and three CpG islands, complete sequence Length = 155699 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ggttcactaaatgtctacat 61 |||||||||||||||||||| Sbjct: 21871 ggttcactaaatgtctacat 21852
>emb|AL158216.16| Human DNA sequence from clone RP1-21K4 on chromosome 1p33-34.3 Contains the 5' end of a variant of the HIVEP3 gene for human immunodeficiency virus type I enhancer binding protein 3, a heterogeneous nuclear ribonucleoprotein F (HNRPF) pseudogene and a CpG island, complete sequence Length = 51692 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 tgatggataaaatggacacagtcc 183 ||||| |||||||||||||||||| Sbjct: 9796 tgatgaataaaatggacacagtcc 9819
>gb|AC108163.3| Homo sapiens BAC clone RP11-694K14 from 4, complete sequence Length = 95304 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 aagaagaagaaaaataagtatctt 160 |||||||||||| ||||||||||| Sbjct: 82604 aagaagaagaaagataagtatctt 82581
>gb|AC154727.2| Mus musculus BAC clone RP24-375I15 from 14, complete sequence Length = 189907 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 aaataagtatcttgatggataaaa 171 ||||||||||||||||| |||||| Sbjct: 138603 aaataagtatcttgatgaataaaa 138580
>gb|AC124825.8| Mus musculus chromosome 5, clone RP24-248M2, complete sequence Length = 188127 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aagaagaagaaaaataagta 156 |||||||||||||||||||| Sbjct: 73102 aagaagaagaaaaataagta 73083 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,037,721 Number of Sequences: 3902068 Number of extensions: 4037721 Number of successful extensions: 91380 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91310 Number of HSP's gapped (non-prelim): 69 length of query: 361 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 339 effective length of database: 17,147,199,772 effective search space: 5812900722708 effective search space used: 5812900722708 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
