ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11d18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009607.1| Triticum aestivum clone wre1n.pk0094.e6:fis, full... 928 0.0
2dbj|AK099850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 502 e-139
3gb|AY105171.1| Zea mays PCO087106 mRNA sequence 198 2e-47
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 141 4e-30
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 141 4e-30
6gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 141 4e-30
7gb|DQ075204.1| Glycine max chorismate synthase mRNA, complete cds 68 4e-08
8emb|X60544.1|CSCHOSYN C.sempervirens mRNA for chorismate synthas... 68 4e-08
9emb|Z21791.1|LECHOSYNB L.esculentum chorismate synthase 2 precursor 64 7e-07
10ref|NM_103779.3| Arabidopsis thaliana EMB1144; chorismate syntha... 62 3e-06
11gb|BT015785.1| Arabidopsis thaliana At1g48850 mRNA, complete cds 62 3e-06
12gb|AY057519.1| Arabidopsis thaliana At1g48850/T24P22_3 mRNA, com... 62 3e-06
13emb|BX818532.1|CNS0ACMM Arabidopsis thaliana Full-length cDNA Co... 62 3e-06
14emb|BX815746.1|CNS0ACWT Arabidopsis thaliana Full-length cDNA Co... 62 3e-06
15dbj|AK220709.1| Arabidopsis thaliana mRNA for hypothetical prote... 60 1e-05
16ref|NM_001036080.1| Arabidopsis thaliana EMB1144; chorismate syn... 56 2e-04
17gb|DQ166526.1| Fagus sylvatica putative chorismate synthase mRNA... 50 0.010
18ref|NM_001036081.1| Arabidopsis thaliana EMB1144; chorismate syn... 48 0.041
19emb|BX814847.1|CNS0ACYT Arabidopsis thaliana Full-length cDNA Co... 48 0.041
20gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24... 48 0.041
21emb|Z21796.1|LECHOSYNA L.esculentum chorismate synthase 1 precursor 46 0.16
22gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 2.5

>gb|BT009607.1| Triticum aestivum clone wre1n.pk0094.e6:fis, full insert mRNA
           sequence
          Length = 1057

 Score =  928 bits (468), Expect = 0.0
 Identities = 516/532 (96%)
 Strand = Plus / Minus

                                                                       
Query: 200 atatataagagggccatgtcgttccaaggcaggcatcatgctagatctggtgccaacgca 259
           |||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 810 atatgtaagagggccttctcgttccaaggcgggcatcatgctagatctggtgccaacgca 751

                                                                       
Query: 260 ggtgtactgttcgcggaaccgattggttcttgtagggcgaggttcagcgggaacatctcg 319
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggtgtactgtttgcggagccgattggttcttgtagggcgaggttcagcgggaacatctcg 691

                                                                       
Query: 320 cattgagcaacatgtgccatcagctggtccatgaggaccaatgcggccatcgtctccacc 379
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 690 cactgagcaacatgtgccatcagctggtccatgaggaccaatgcagccatcgtctccacc 631

                                                                       
Query: 380 attggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagctcgata 439
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 630 attggaacagcccgagggacgacacatgggtcatggcgaccccttgtcagaagttcgata 571

                                                                       
Query: 440 tcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggcttgaaa 499
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcctcatgatcccttgttacagtattttgcttcttcccaatagttgctgttggcttgaaa 511

                                                                       
Query: 500 gctactttgaagtatatggtttcaccatttgatatcccgccctgtacaccgcccgagcga 559
           ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 510 gctactttgaagtatatagtttcaccatttgatatccctccctgtacaccgcccgagcga 451

                                                                       
Query: 560 ttggttcgtgttctcacatttccaccctcatccatatagaactcatcgttatgctcactt 619
           |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 450 ttggttcgtgttcttacatttccagcctcgtccatatagaactcatcgttatgctcactt 391

                                                                       
Query: 620 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 331

                                                               
Query: 680 gaaagcatagcctttgccagtagagcttcaagtttgtcaaatacaggagagc 731
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gaaagcatagcctttgccagtagagcttcaagtttgtcaaatacaggagagc 279



 Score =  218 bits (110), Expect = 2e-53
 Identities = 157/168 (93%), Gaps = 4/168 (2%)
 Strand = Plus / Minus

                                                                       
Query: 11  ttctattgctn-cattgactg-ttgtcc-gaacaaactgttnt-gccgcaaacttttatt 66
           ||||||||||  ||||||||| |||||| ||||||||||||   ||||||||||||||||
Sbjct: 996 ttctattgctcacattgactggttgtccagaacaaactgttcacgccgcaaacttttatt 937

                                                                       
Query: 67  ttcggtgatcaactgatctctcggtgtacactaatccaatgtatattctaggatacaggt 126
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ttcggtgatcaacagatctcttggtgtacactaatccaatgtatattctaggatacaggt 877

                                                           
Query: 127 ttggtacaaaactgcaaactgcttggcaaaaccctgaaatgtgacaga 174
           |||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 876 ttggtacaaaactgcaaactgcttagcaaaaccctgaaatgtggcaga 829



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>dbj|AK099850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110C10, full
            insert sequence
          Length = 1607

 Score =  502 bits (253), Expect = e-139
 Identities = 400/449 (89%)
 Strand = Plus / Minus

                                                                        
Query: 283  tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342
            |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 1327 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 1268

                                                                        
Query: 343  ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagcccgagggacaac 402
            ||||||||||||||| ||||||||||| | ||||||||| || ||||| |||||||||||
Sbjct: 1267 ctggtccatgaggactaatgcggccatggactccaccatcggcacagcgcgagggacaac 1208

                                                                        
Query: 403  acatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcccttgtcacagt 462
            ||||||||| ||||| |||||||  | ||| || | ||||||||| |||||||  |||||
Sbjct: 1207 acatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcccttgaaacagt 1148

                                                                        
Query: 463  attttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtttc 522
            || ||| |||||||||||||| || |||||||||||||||||||||||||||||  ||||
Sbjct: 1147 atgttgtttcttcccaatagtcgcggttggcttgaaagctactttgaagtatataatttc 1088

                                                                        
Query: 523  accatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctcacatttcc 582
            ||||||||||||||| ||||| |||||||| || ||||| |||| |||||||||||||||
Sbjct: 1087 accatttgatatccctccctgcacaccgcctgaacgattagttcttgttctcacatttcc 1028

                                                                        
Query: 583  accctcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaa 642
            | |||||||||||||||||||||| |||||||||||||||||   |||||||||||||||
Sbjct: 1027 agcctcatccatatagaactcatcattatgctcacttccagtgtagtcagtacctgcaaa 968

                                                                        
Query: 643  tccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcctttgccagtag 702
            |||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |  
Sbjct: 967  tccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctttcgccaattc 908

                                         
Query: 703  agcttcaagtttgtcaaatacaggagagc 731
            ||| |||||||||||||||||||||||||
Sbjct: 907  agcctcaagtttgtcaaatacaggagagc 879



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>gb|AY105171.1| Zea mays PCO087106 mRNA sequence
          Length = 1626

 Score =  198 bits (100), Expect = 2e-47
 Identities = 322/396 (81%)
 Strand = Plus / Minus

                                                                        
Query: 305  agcgggaacatctcgcattgagcaacatgtgccatcagctggtccatgaggaccaatgcg 364
            |||| |||||||||||| ||||| || || |||||||||||||||||||||||||| |||
Sbjct: 1331 agcgcgaacatctcgcactgagccacgtgcgccatcagctggtccatgaggaccaacgcg 1272

                                                                        
Query: 365  gccatcgtctccaccattggaacagcccgagggacaacacatgggtcatggcgacccctt 424
            ||||| |  |||||||  |||||||| |||||| | || |||||||||||||| || |||
Sbjct: 1271 gccatggattccaccacaggaacagctcgaggggcgacgcatgggtcatggcgccctctt 1212

                                                                        
Query: 425  gtcagaagctcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagtt 484
            |  |||||||| |  | || | | ||||||| ||| || || || |||  ||| |||| |
Sbjct: 1211 gctagaagctcaacgttctgacgctcccttgacacggtgttctgtttcaccccgatagat 1152

                                                                        
Query: 485  gctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatcccgccctgt 544
            | ||| ||||| ||||| ||||||||||  |   | ||| |||| |||||||| ||||| 
Sbjct: 1151 ggtgtcggcttaaaagcaactttgaagtgcacaatctcaacattcgatatccctccctgc 1092

                                                                        
Query: 545  acaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatatagaactca 604
            ||||| ||||||||||| || ||||| || ||| ||||| ||| ||||||||| ||||||
Sbjct: 1091 acaccacccgagcgattagtccgtgtcctgacacttccagccttatccatataaaactca 1032

                                                                        
Query: 605  tcgttatgctcacttccagttaggtcagtacctgcaaatccactaccgatctcaaacccc 664
            || |||||||||||||| || | ||| || || || ||||| || || ||||| ||||| 
Sbjct: 1031 tcattatgctcacttcctgtcaagtcggtcccggcgaatccgctgccaatctcgaacccg 972

                                                
Query: 665  ttgcttgcaggaagagaaagcatagcctttgccagt 700
            ||||| ||||||| |||||||||||| |||||||||
Sbjct: 971  ttgctcgcaggaatagaaagcatagcttttgccagt 936



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  141 bits (71), Expect = 4e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                           
Query: 633     tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcct 692
               |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8150073 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctt 8150132

                                                      
Query: 693     ttgccagtagagcttcaagtttgtcaaatacaggagagc 731
               | |||| |  ||| |||||||||||||||||||||||||
Sbjct: 8150133 tcgccaattcagcctcaagtttgtcaaatacaggagagc 8150171



 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                           
Query: 540     cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 599
               |||| |||||||| || ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 8149872 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8149931

                                                      
Query: 600     actcatcgttatgctcacttccagttaggtcagtacctg 638
               ||||||| |||||||||||||||||   |||||||||||
Sbjct: 8149932 actcatcattatgctcacttccagtgtagtcagtacctg 8149970



 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                           
Query: 283     tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342
               |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 8148971 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8149030

                                                               
Query: 343     ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 390
               ||||||||||||||| ||||||||||| | ||||||||| || |||||
Sbjct: 8149031 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8149078



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                           
Query: 475     cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 534
               ||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 8149667 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8149726

                        
Query: 535     cccgccctg 543
               ||| |||||
Sbjct: 8149727 ccctccctg 8149735



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                           
Query: 392     cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 451
               |||||||||||||||||||| ||||| |||||||  | ||| || | ||||||||| |||
Sbjct: 8149318 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8149377

                                       
Query: 452     cttgtcacagtattttgcttcttc 475
               ||||  ||||||| ||| ||||||
Sbjct: 8149378 cttgaaacagtatgttgtttcttc 8149401



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  141 bits (71), Expect = 4e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                           
Query: 633     tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcct 692
               |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8147908 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctt 8147967

                                                      
Query: 693     ttgccagtagagcttcaagtttgtcaaatacaggagagc 731
               | |||| |  ||| |||||||||||||||||||||||||
Sbjct: 8147968 tcgccaattcagcctcaagtttgtcaaatacaggagagc 8148006



 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                           
Query: 540     cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 599
               |||| |||||||| || ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 8147707 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8147766

                                                      
Query: 600     actcatcgttatgctcacttccagttaggtcagtacctg 638
               ||||||| |||||||||||||||||   |||||||||||
Sbjct: 8147767 actcatcattatgctcacttccagtgtagtcagtacctg 8147805



 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                           
Query: 283     tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342
               |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 8146806 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8146865

                                                               
Query: 343     ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 390
               ||||||||||||||| ||||||||||| | ||||||||| || |||||
Sbjct: 8146866 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8146913



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                           
Query: 475     cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 534
               ||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 8147502 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8147561

                        
Query: 535     cccgccctg 543
               ||| |||||
Sbjct: 8147562 ccctccctg 8147570



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                           
Query: 392     cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 451
               |||||||||||||||||||| ||||| |||||||  | ||| || | ||||||||| |||
Sbjct: 8147153 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8147212

                                       
Query: 452     cttgtcacagtattttgcttcttc 475
               ||||  ||||||| ||| ||||||
Sbjct: 8147213 cttgaaacagtatgttgtttcttc 8147236



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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score =  141 bits (71), Expect = 4e-30
 Identities = 92/99 (92%)
 Strand = Plus / Plus

                                                                         
Query: 633   tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcct 692
             |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 81503 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctt 81562

                                                    
Query: 693   ttgccagtagagcttcaagtttgtcaaatacaggagagc 731
             | |||| |  ||| |||||||||||||||||||||||||
Sbjct: 81563 tcgccaattcagcctcaagtttgtcaaatacaggagagc 81601



 Score =  117 bits (59), Expect = 5e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                         
Query: 540   cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 599
             |||| |||||||| || ||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 81302 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 81361

                                                    
Query: 600   actcatcgttatgctcacttccagttaggtcagtacctg 638
             ||||||| |||||||||||||||||   |||||||||||
Sbjct: 81362 actcatcattatgctcacttccagtgtagtcagtacctg 81400



 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                         
Query: 283   tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342
             |||||||||||| || |||||||| || |||||||| ||||||||||  || ||||||||
Sbjct: 80401 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 80460

                                                             
Query: 343   ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 390
             ||||||||||||||| ||||||||||| | ||||||||| || |||||
Sbjct: 80461 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 80508



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 64/69 (92%)
 Strand = Plus / Plus

                                                                         
Query: 475   cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 534
             ||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 81097 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 81156

                      
Query: 535   cccgccctg 543
             ||| |||||
Sbjct: 81157 ccctccctg 81165



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 71/84 (84%)
 Strand = Plus / Plus

                                                                         
Query: 392   cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 451
             |||||||||||||||||||| ||||| |||||||  | ||| || | ||||||||| |||
Sbjct: 80748 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 80807

                                     
Query: 452   cttgtcacagtattttgcttcttc 475
             ||||  ||||||| ||| ||||||
Sbjct: 80808 cttgaaacagtatgttgtttcttc 80831



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>gb|DQ075204.1| Glycine max chorismate synthase mRNA, complete cds
          Length = 1485

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 136/170 (80%)
 Strand = Plus / Minus

                                                                        
Query: 455  gtcacagtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtat 514
            ||||||||||| |||||||| ||||| |||| ||||||||||||||||| | | |  |  
Sbjct: 1174 gtcacagtattgtgcttctttccaattgttgatgttggcttgaaagctattctcatatta 1115

                                                                        
Query: 515  atggtttcaccatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctc 574
            ||| |||| ||||| || || || |||||||  || || |||||||| |||| |||||| 
Sbjct: 1114 atgatttccccattggaaattccaccctgtatcccaccagagcgatttgttcttgttctt 1055

                                                              
Query: 575  acatttccaccctcatccatatagaactcatcgttatgctcacttccagt 624
               ||||||   ||||| |||||||||||||| ||||| ||||| |||||
Sbjct: 1054 gtgtttccatgttcatctatatagaactcatcattatgttcactcccagt 1005



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 703 agcttcaagtttgtcaaatac 723
           |||||||||||||||||||||
Sbjct: 926 agcttcaagtttgtcaaatac 906



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>emb|X60544.1|CSCHOSYN C.sempervirens mRNA for chorismate synthase precursor
          Length = 1754

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 106/130 (81%)
 Strand = Plus / Minus

                                                                        
Query: 374  tccaccattggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagc 433
            ||||||||||||||||| ||||| |||||||| ||||| |||||||| | ||  |  || 
Sbjct: 1369 tccaccattggaacagctcgaggtacaacacaagggtcgtggcgaccacgtgctatgagt 1310

                                                                        
Query: 434  tcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggc 493
            || || || ||| | || || ||||||||||| |||||||| ||||| || | ||| |||
Sbjct: 1309 tcaatctcttcacgttctctggtcacagtattctgcttctttccaattgtagatgtcggc 1250

                      
Query: 494  ttgaaagcta 503
            ||||||||||
Sbjct: 1249 ttgaaagcta 1240



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>emb|Z21791.1|LECHOSYNB L.esculentum chorismate synthase 2 precursor
          Length = 1802

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 587  tcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaatcca 646
            ||||||||| |||||||||| ||||||||||| ||||| | |  |||||||||||| |||
Sbjct: 1003 tcatccataaagaactcatcattatgctcactgccagtcatgaaagtacctgcaaagcca 944

                                
Query: 647  ctaccgatctcaaacccctt 666
            || || | |||||| |||||
Sbjct: 943  cttccaaactcaaaaccctt 924



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>ref|NM_103779.3| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144)
            transcript variant AT1G48850.1 mRNA, complete cds
          Length = 1953

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1228 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169

                                   
Query: 521  tcaccatttgatatcccgccctg 543
            ||||||||||| ||||| |||||
Sbjct: 1168 tcaccatttgagatccctccctg 1146



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>gb|BT015785.1| Arabidopsis thaliana At1g48850 mRNA, complete cds
          Length = 1311

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1094 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1035

                                   
Query: 521  tcaccatttgatatcccgccctg 543
            ||||||||||| ||||| |||||
Sbjct: 1034 tcaccatttgagatccctccctg 1012



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>gb|AY057519.1| Arabidopsis thaliana At1g48850/T24P22_3 mRNA, complete cds
          Length = 1603

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1216 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1157

                                   
Query: 521  tcaccatttgatatcccgccctg 543
            ||||||||||| ||||| |||||
Sbjct: 1156 tcaccatttgagatccctccctg 1134



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>emb|BX818532.1|CNS0ACMM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL84ZB05 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1494

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1169 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1110

                                   
Query: 521  tcaccatttgatatcccgccctg 543
            ||||||||||| ||||| |||||
Sbjct: 1109 tcaccatttgagatccctccctg 1087



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>emb|BX815746.1|CNS0ACWT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS8ZG07 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1488

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 461  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520
            |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1156 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1097

                                   
Query: 521  tcaccatttgatatcccgccctg 543
            ||||||||||| ||||| |||||
Sbjct: 1096 tcaccatttgagatccctccctg 1074



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>dbj|AK220709.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-03-E08
          Length = 460

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520
           |||||||||||| | ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 87  gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 28

                                 
Query: 521 tcaccatttgatatcccgccct 542
           ||||||||||| ||||| ||||
Sbjct: 27  tcaccatttgagatccctccct 6



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>ref|NM_001036080.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144)
            transcript variant AT1G48850.2 mRNA, complete cds
          Length = 2020

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 70/83 (84%), Gaps = 2/83 (2%)
 Strand = Plus / Minus

                                                                        
Query: 461  gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520
            |||||||||||||  ||||| |||| |||||||||||| |||||| | | || |||  ||
Sbjct: 1226 gtattttgcttct--ccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169

                                   
Query: 521  tcaccatttgatatcccgccctg 543
            ||||||||||| ||||| |||||
Sbjct: 1168 tcaccatttgagatccctccctg 1146



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>gb|DQ166526.1| Fagus sylvatica putative chorismate synthase mRNA, complete cds
          Length = 1643

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                        
Query: 478  aatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatccc 537
            |||||| ||||||||||||||||||||| | |  | ||||  ||| |||||||| || ||
Sbjct: 1134 aatagtagctgttggcttgaaagctactctcatatttatgacttccccatttgagattcc 1075

                                         
Query: 538  gccctgtacaccgcccgagcgattggttc 566
             |||||||  ||||| ||||| |||||||
Sbjct: 1074 tccctgtatcccgccagagcggttggttc 1046



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>ref|NM_001036081.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144)
            transcript variant AT1G48850.3 mRNA, complete cds
          Length = 2020

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 476  ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 535
            ||||| |||| |||||||||||| |||||| | | || |||  ||||||||||||| |||
Sbjct: 1213 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 1154

                    
Query: 536  ccgccctg 543
            || |||||
Sbjct: 1153 cctccctg 1146



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>emb|BX814847.1|CNS0ACYT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS10ZH06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1538

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 70/84 (83%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                        
Query: 461  gtattttgcttcttcccaatagttgct-gttggcttgaaagctactttgaagtatatggt 519
            |||||||||||| | ||||| |||| | ||||||||||| |||||| | | || |||  |
Sbjct: 1229 gtattttgcttccttccaattgttgattgttggcttgaaggctactctcatgtttattat 1170

                                    
Query: 520  ttcaccatttgatatcccgccctg 543
            |||||||||||| ||||| |||||
Sbjct: 1169 ttcaccatttgagatccctccctg 1146



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>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete
             sequence
          Length = 18062

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                         
Query: 476   ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 535
             ||||| |||| |||||||||||| |||||| | | || |||  ||||||||||||| |||
Sbjct: 10181 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 10122

                         
Query: 536   ccgccctgtaca 547
             || |||| ||||
Sbjct: 10121 cctccctataca 10110



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>emb|Z21796.1|LECHOSYNA L.esculentum chorismate synthase 1 precursor
          Length = 1701

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 377  accattggaacagcccgagggacaacacatgggtcatggcgacccct 423
            |||||||||||||| || || || ||||| || ||||||||||||||
Sbjct: 1223 accattggaacagctcggggaaccacacaaggatcatggcgacccct 1177



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 586  ctcatccatatagaactcatcgttatgctcacttccagt 624
            ||||||||||||||| ||||| |||||||| || |||||
Sbjct: 1014 ctcatccatatagaattcatcattatgctcgctaccagt 976



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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 649    accgatctcaaaccccttgct 669
              |||||||||||||||||||||
Sbjct: 355403 accgatctcaaaccccttgct 355423


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,994,581
Number of Sequences: 3902068
Number of extensions: 5994581
Number of successful extensions: 97497
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97351
Number of HSP's gapped (non-prelim): 146
length of query: 731
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 708
effective length of database: 17,143,297,704
effective search space: 12137454774432
effective search space used: 12137454774432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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