Clone Name | rbasd11d18 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009607.1| Triticum aestivum clone wre1n.pk0094.e6:fis, full insert mRNA sequence Length = 1057 Score = 928 bits (468), Expect = 0.0 Identities = 516/532 (96%) Strand = Plus / Minus Query: 200 atatataagagggccatgtcgttccaaggcaggcatcatgctagatctggtgccaacgca 259 |||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 810 atatgtaagagggccttctcgttccaaggcgggcatcatgctagatctggtgccaacgca 751 Query: 260 ggtgtactgttcgcggaaccgattggttcttgtagggcgaggttcagcgggaacatctcg 319 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 ggtgtactgtttgcggagccgattggttcttgtagggcgaggttcagcgggaacatctcg 691 Query: 320 cattgagcaacatgtgccatcagctggtccatgaggaccaatgcggccatcgtctccacc 379 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 690 cactgagcaacatgtgccatcagctggtccatgaggaccaatgcagccatcgtctccacc 631 Query: 380 attggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagctcgata 439 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 630 attggaacagcccgagggacgacacatgggtcatggcgaccccttgtcagaagttcgata 571 Query: 440 tcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggcttgaaa 499 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 570 tcctcatgatcccttgttacagtattttgcttcttcccaatagttgctgttggcttgaaa 511 Query: 500 gctactttgaagtatatggtttcaccatttgatatcccgccctgtacaccgcccgagcga 559 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 510 gctactttgaagtatatagtttcaccatttgatatccctccctgtacaccgcccgagcga 451 Query: 560 ttggttcgtgttctcacatttccaccctcatccatatagaactcatcgttatgctcactt 619 |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| Sbjct: 450 ttggttcgtgttcttacatttccagcctcgtccatatagaactcatcgttatgctcactt 391 Query: 620 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ccagttaggtcagtacctgcaaatccactaccgatctcaaaccccttgcttgcaggaaga 331 Query: 680 gaaagcatagcctttgccagtagagcttcaagtttgtcaaatacaggagagc 731 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 gaaagcatagcctttgccagtagagcttcaagtttgtcaaatacaggagagc 279 Score = 218 bits (110), Expect = 2e-53 Identities = 157/168 (93%), Gaps = 4/168 (2%) Strand = Plus / Minus Query: 11 ttctattgctn-cattgactg-ttgtcc-gaacaaactgttnt-gccgcaaacttttatt 66 |||||||||| ||||||||| |||||| |||||||||||| |||||||||||||||| Sbjct: 996 ttctattgctcacattgactggttgtccagaacaaactgttcacgccgcaaacttttatt 937 Query: 67 ttcggtgatcaactgatctctcggtgtacactaatccaatgtatattctaggatacaggt 126 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 936 ttcggtgatcaacagatctcttggtgtacactaatccaatgtatattctaggatacaggt 877 Query: 127 ttggtacaaaactgcaaactgcttggcaaaaccctgaaatgtgacaga 174 |||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct: 876 ttggtacaaaactgcaaactgcttagcaaaaccctgaaatgtggcaga 829
>dbj|AK099850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110C10, full insert sequence Length = 1607 Score = 502 bits (253), Expect = e-139 Identities = 400/449 (89%) Strand = Plus / Minus Query: 283 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 1327 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 1268 Query: 343 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagcccgagggacaac 402 ||||||||||||||| ||||||||||| | ||||||||| || ||||| ||||||||||| Sbjct: 1267 ctggtccatgaggactaatgcggccatggactccaccatcggcacagcgcgagggacaac 1208 Query: 403 acatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcccttgtcacagt 462 ||||||||| ||||| ||||||| | ||| || | ||||||||| ||||||| ||||| Sbjct: 1207 acatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcccttgaaacagt 1148 Query: 463 attttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtttc 522 || ||| |||||||||||||| || ||||||||||||||||||||||||||||| |||| Sbjct: 1147 atgttgtttcttcccaatagtcgcggttggcttgaaagctactttgaagtatataatttc 1088 Query: 523 accatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctcacatttcc 582 ||||||||||||||| ||||| |||||||| || ||||| |||| ||||||||||||||| Sbjct: 1087 accatttgatatccctccctgcacaccgcctgaacgattagttcttgttctcacatttcc 1028 Query: 583 accctcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaa 642 | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 1027 agcctcatccatatagaactcatcattatgctcacttccagtgtagtcagtacctgcaaa 968 Query: 643 tccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcctttgccagtag 702 |||||| ||||||||||||||||||||||||||||||||||||||||| || |||| | Sbjct: 967 tccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctttcgccaattc 908 Query: 703 agcttcaagtttgtcaaatacaggagagc 731 ||| ||||||||||||||||||||||||| Sbjct: 907 agcctcaagtttgtcaaatacaggagagc 879
>gb|AY105171.1| Zea mays PCO087106 mRNA sequence Length = 1626 Score = 198 bits (100), Expect = 2e-47 Identities = 322/396 (81%) Strand = Plus / Minus Query: 305 agcgggaacatctcgcattgagcaacatgtgccatcagctggtccatgaggaccaatgcg 364 |||| |||||||||||| ||||| || || |||||||||||||||||||||||||| ||| Sbjct: 1331 agcgcgaacatctcgcactgagccacgtgcgccatcagctggtccatgaggaccaacgcg 1272 Query: 365 gccatcgtctccaccattggaacagcccgagggacaacacatgggtcatggcgacccctt 424 ||||| | ||||||| |||||||| |||||| | || |||||||||||||| || ||| Sbjct: 1271 gccatggattccaccacaggaacagctcgaggggcgacgcatgggtcatggcgccctctt 1212 Query: 425 gtcagaagctcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagtt 484 | |||||||| | | || | | ||||||| ||| || || || ||| ||| |||| | Sbjct: 1211 gctagaagctcaacgttctgacgctcccttgacacggtgttctgtttcaccccgatagat 1152 Query: 485 gctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatcccgccctgt 544 | ||| ||||| ||||| |||||||||| | | ||| |||| |||||||| ||||| Sbjct: 1151 ggtgtcggcttaaaagcaactttgaagtgcacaatctcaacattcgatatccctccctgc 1092 Query: 545 acaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatatagaactca 604 ||||| ||||||||||| || ||||| || ||| ||||| ||| ||||||||| |||||| Sbjct: 1091 acaccacccgagcgattagtccgtgtcctgacacttccagccttatccatataaaactca 1032 Query: 605 tcgttatgctcacttccagttaggtcagtacctgcaaatccactaccgatctcaaacccc 664 || |||||||||||||| || | ||| || || || ||||| || || ||||| ||||| Sbjct: 1031 tcattatgctcacttcctgtcaagtcggtcccggcgaatccgctgccaatctcgaacccg 972 Query: 665 ttgcttgcaggaagagaaagcatagcctttgccagt 700 ||||| ||||||| |||||||||||| ||||||||| Sbjct: 971 ttgctcgcaggaatagaaagcatagcttttgccagt 936
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 633 tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcct 692 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 8150073 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctt 8150132 Query: 693 ttgccagtagagcttcaagtttgtcaaatacaggagagc 731 | |||| | ||| ||||||||||||||||||||||||| Sbjct: 8150133 tcgccaattcagcctcaagtttgtcaaatacaggagagc 8150171 Score = 117 bits (59), Expect = 5e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 540 cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 599 |||| |||||||| || ||||| |||| |||||||||||||||| ||||||||||||||| Sbjct: 8149872 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8149931 Query: 600 actcatcgttatgctcacttccagttaggtcagtacctg 638 ||||||| ||||||||||||||||| ||||||||||| Sbjct: 8149932 actcatcattatgctcacttccagtgtagtcagtacctg 8149970 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 283 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 8148971 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8149030 Query: 343 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 390 ||||||||||||||| ||||||||||| | ||||||||| || ||||| Sbjct: 8149031 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8149078 Score = 97.6 bits (49), Expect = 5e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 475 cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 534 ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 8149667 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8149726 Query: 535 cccgccctg 543 ||| ||||| Sbjct: 8149727 ccctccctg 8149735 Score = 63.9 bits (32), Expect = 7e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 392 cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 451 |||||||||||||||||||| ||||| ||||||| | ||| || | ||||||||| ||| Sbjct: 8149318 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8149377 Query: 452 cttgtcacagtattttgcttcttc 475 |||| ||||||| ||| |||||| Sbjct: 8149378 cttgaaacagtatgttgtttcttc 8149401
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 633 tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcct 692 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 8147908 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctt 8147967 Query: 693 ttgccagtagagcttcaagtttgtcaaatacaggagagc 731 | |||| | ||| ||||||||||||||||||||||||| Sbjct: 8147968 tcgccaattcagcctcaagtttgtcaaatacaggagagc 8148006 Score = 117 bits (59), Expect = 5e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 540 cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 599 |||| |||||||| || ||||| |||| |||||||||||||||| ||||||||||||||| Sbjct: 8147707 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 8147766 Query: 600 actcatcgttatgctcacttccagttaggtcagtacctg 638 ||||||| ||||||||||||||||| ||||||||||| Sbjct: 8147767 actcatcattatgctcacttccagtgtagtcagtacctg 8147805 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 283 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 8146806 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 8146865 Query: 343 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 390 ||||||||||||||| ||||||||||| | ||||||||| || ||||| Sbjct: 8146866 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 8146913 Score = 97.6 bits (49), Expect = 5e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 475 cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 534 ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 8147502 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 8147561 Query: 535 cccgccctg 543 ||| ||||| Sbjct: 8147562 ccctccctg 8147570 Score = 63.9 bits (32), Expect = 7e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 392 cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 451 |||||||||||||||||||| ||||| ||||||| | ||| || | ||||||||| ||| Sbjct: 8147153 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 8147212 Query: 452 cttgtcacagtattttgcttcttc 475 |||| ||||||| ||| |||||| Sbjct: 8147213 cttgaaacagtatgttgtttcttc 8147236
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 141 bits (71), Expect = 4e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 633 tacctgcaaatccactaccgatctcaaaccccttgcttgcaggaagagaaagcatagcct 692 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 81503 tacctgcaaatccactgccgatctcaaaccccttgcttgcaggaagagaaagcatagctt 81562 Query: 693 ttgccagtagagcttcaagtttgtcaaatacaggagagc 731 | |||| | ||| ||||||||||||||||||||||||| Sbjct: 81563 tcgccaattcagcctcaagtttgtcaaatacaggagagc 81601 Score = 117 bits (59), Expect = 5e-23 Identities = 89/99 (89%) Strand = Plus / Plus Query: 540 cctgtacaccgcccgagcgattggttcgtgttctcacatttccaccctcatccatataga 599 |||| |||||||| || ||||| |||| |||||||||||||||| ||||||||||||||| Sbjct: 81302 cctgcacaccgcctgaacgattagttcttgttctcacatttccagcctcatccatataga 81361 Query: 600 actcatcgttatgctcacttccagttaggtcagtacctg 638 ||||||| ||||||||||||||||| ||||||||||| Sbjct: 81362 actcatcattatgctcacttccagtgtagtcagtacctg 81400 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 283 tggttcttgtagggcgaggttcagcgggaacatctcgcattgagcaacatgtgccatcag 342 |||||||||||| || |||||||| || |||||||| |||||||||| || |||||||| Sbjct: 80401 tggttcttgtagagcaaggttcagtggaaacatctcacattgagcaatgtgcgccatcag 80460 Query: 343 ctggtccatgaggaccaatgcggccatcgtctccaccattggaacagc 390 ||||||||||||||| ||||||||||| | ||||||||| || ||||| Sbjct: 80461 ctggtccatgaggactaatgcggccatggactccaccatcggcacagc 80508 Score = 97.6 bits (49), Expect = 5e-17 Identities = 64/69 (92%) Strand = Plus / Plus Query: 475 cccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatat 534 ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 81097 cccaatagtcgcggttggcttgaaagctactttgaagtatataatttcaccatttgatat 81156 Query: 535 cccgccctg 543 ||| ||||| Sbjct: 81157 ccctccctg 81165 Score = 63.9 bits (32), Expect = 7e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 392 cgagggacaacacatgggtcatggcgaccccttgtcagaagctcgatatcctcatgatcc 451 |||||||||||||||||||| ||||| ||||||| | ||| || | ||||||||| ||| Sbjct: 80748 cgagggacaacacatgggtcgtggcggccccttgctaaaagttcaacatcctcatgctcc 80807 Query: 452 cttgtcacagtattttgcttcttc 475 |||| ||||||| ||| |||||| Sbjct: 80808 cttgaaacagtatgttgtttcttc 80831
>gb|DQ075204.1| Glycine max chorismate synthase mRNA, complete cds Length = 1485 Score = 67.9 bits (34), Expect = 4e-08 Identities = 136/170 (80%) Strand = Plus / Minus Query: 455 gtcacagtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtat 514 ||||||||||| |||||||| ||||| |||| ||||||||||||||||| | | | | Sbjct: 1174 gtcacagtattgtgcttctttccaattgttgatgttggcttgaaagctattctcatatta 1115 Query: 515 atggtttcaccatttgatatcccgccctgtacaccgcccgagcgattggttcgtgttctc 574 ||| |||| ||||| || || || ||||||| || || |||||||| |||| |||||| Sbjct: 1114 atgatttccccattggaaattccaccctgtatcccaccagagcgatttgttcttgttctt 1055 Query: 575 acatttccaccctcatccatatagaactcatcgttatgctcacttccagt 624 |||||| ||||| |||||||||||||| ||||| ||||| ||||| Sbjct: 1054 gtgtttccatgttcatctatatagaactcatcattatgttcactcccagt 1005 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 703 agcttcaagtttgtcaaatac 723 ||||||||||||||||||||| Sbjct: 926 agcttcaagtttgtcaaatac 906
>emb|X60544.1|CSCHOSYN C.sempervirens mRNA for chorismate synthase precursor Length = 1754 Score = 67.9 bits (34), Expect = 4e-08 Identities = 106/130 (81%) Strand = Plus / Minus Query: 374 tccaccattggaacagcccgagggacaacacatgggtcatggcgaccccttgtcagaagc 433 ||||||||||||||||| ||||| |||||||| ||||| |||||||| | || | || Sbjct: 1369 tccaccattggaacagctcgaggtacaacacaagggtcgtggcgaccacgtgctatgagt 1310 Query: 434 tcgatatcctcatgatcccttgtcacagtattttgcttcttcccaatagttgctgttggc 493 || || || ||| | || || ||||||||||| |||||||| ||||| || | ||| ||| Sbjct: 1309 tcaatctcttcacgttctctggtcacagtattctgcttctttccaattgtagatgtcggc 1250 Query: 494 ttgaaagcta 503 |||||||||| Sbjct: 1249 ttgaaagcta 1240
>emb|Z21791.1|LECHOSYNB L.esculentum chorismate synthase 2 precursor Length = 1802 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 587 tcatccatatagaactcatcgttatgctcacttccagttaggtcagtacctgcaaatcca 646 ||||||||| |||||||||| ||||||||||| ||||| | | |||||||||||| ||| Sbjct: 1003 tcatccataaagaactcatcattatgctcactgccagtcatgaaagtacctgcaaagcca 944 Query: 647 ctaccgatctcaaacccctt 666 || || | |||||| ||||| Sbjct: 943 cttccaaactcaaaaccctt 924
>ref|NM_103779.3| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144) transcript variant AT1G48850.1 mRNA, complete cds Length = 1953 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1228 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169 Query: 521 tcaccatttgatatcccgccctg 543 ||||||||||| ||||| ||||| Sbjct: 1168 tcaccatttgagatccctccctg 1146
>gb|BT015785.1| Arabidopsis thaliana At1g48850 mRNA, complete cds Length = 1311 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1094 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1035 Query: 521 tcaccatttgatatcccgccctg 543 ||||||||||| ||||| ||||| Sbjct: 1034 tcaccatttgagatccctccctg 1012
>gb|AY057519.1| Arabidopsis thaliana At1g48850/T24P22_3 mRNA, complete cds Length = 1603 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1216 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1157 Query: 521 tcaccatttgatatcccgccctg 543 ||||||||||| ||||| ||||| Sbjct: 1156 tcaccatttgagatccctccctg 1134
>emb|BX818532.1|CNS0ACMM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZB05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1494 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1169 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1110 Query: 521 tcaccatttgatatcccgccctg 543 ||||||||||| ||||| ||||| Sbjct: 1109 tcaccatttgagatccctccctg 1087
>emb|BX815746.1|CNS0ACWT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS8ZG07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1488 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1156 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 1097 Query: 521 tcaccatttgatatcccgccctg 543 ||||||||||| ||||| ||||| Sbjct: 1096 tcaccatttgagatccctccctg 1074
>dbj|AK220709.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-03-E08 Length = 460 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520 |||||||||||| | ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 87 gtattttgcttccttccaattgttgatgttggcttgaaggctactctcatgtttattatt 28 Query: 521 tcaccatttgatatcccgccct 542 ||||||||||| ||||| |||| Sbjct: 27 tcaccatttgagatccctccct 6
>ref|NM_001036080.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144) transcript variant AT1G48850.2 mRNA, complete cds Length = 2020 Score = 56.0 bits (28), Expect = 2e-04 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgctgttggcttgaaagctactttgaagtatatggtt 520 ||||||||||||| ||||| |||| |||||||||||| |||||| | | || ||| || Sbjct: 1226 gtattttgcttct--ccaattgttgatgttggcttgaaggctactctcatgtttattatt 1169 Query: 521 tcaccatttgatatcccgccctg 543 ||||||||||| ||||| ||||| Sbjct: 1168 tcaccatttgagatccctccctg 1146
>gb|DQ166526.1| Fagus sylvatica putative chorismate synthase mRNA, complete cds Length = 1643 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 478 aatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatccc 537 |||||| ||||||||||||||||||||| | | | |||| ||| |||||||| || || Sbjct: 1134 aatagtagctgttggcttgaaagctactctcatatttatgacttccccatttgagattcc 1075 Query: 538 gccctgtacaccgcccgagcgattggttc 566 ||||||| ||||| ||||| ||||||| Sbjct: 1074 tccctgtatcccgccagagcggttggttc 1046
>ref|NM_001036081.1| Arabidopsis thaliana EMB1144; chorismate synthase AT1G48850 (EMB1144) transcript variant AT1G48850.3 mRNA, complete cds Length = 2020 Score = 48.1 bits (24), Expect = 0.041 Identities = 57/68 (83%) Strand = Plus / Minus Query: 476 ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 535 ||||| |||| |||||||||||| |||||| | | || ||| ||||||||||||| ||| Sbjct: 1213 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 1154 Query: 536 ccgccctg 543 || ||||| Sbjct: 1153 cctccctg 1146
>emb|BX814847.1|CNS0ACYT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS10ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1538 Score = 48.1 bits (24), Expect = 0.041 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 461 gtattttgcttcttcccaatagttgct-gttggcttgaaagctactttgaagtatatggt 519 |||||||||||| | ||||| |||| | ||||||||||| |||||| | | || ||| | Sbjct: 1229 gtattttgcttccttccaattgttgattgttggcttgaaggctactctcatgtttattat 1170 Query: 520 ttcaccatttgatatcccgccctg 543 |||||||||||| ||||| ||||| Sbjct: 1169 ttcaccatttgagatccctccctg 1146
>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete sequence Length = 18062 Score = 48.1 bits (24), Expect = 0.041 Identities = 60/72 (83%) Strand = Plus / Minus Query: 476 ccaatagttgctgttggcttgaaagctactttgaagtatatggtttcaccatttgatatc 535 ||||| |||| |||||||||||| |||||| | | || ||| ||||||||||||| ||| Sbjct: 10181 ccaattgttgatgttggcttgaaggctactctcatgtttattatttcaccatttgagatc 10122 Query: 536 ccgccctgtaca 547 || |||| |||| Sbjct: 10121 cctccctataca 10110
>emb|Z21796.1|LECHOSYNA L.esculentum chorismate synthase 1 precursor Length = 1701 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Minus Query: 377 accattggaacagcccgagggacaacacatgggtcatggcgacccct 423 |||||||||||||| || || || ||||| || |||||||||||||| Sbjct: 1223 accattggaacagctcggggaaccacacaaggatcatggcgacccct 1177 Score = 46.1 bits (23), Expect = 0.16 Identities = 35/39 (89%) Strand = Plus / Minus Query: 586 ctcatccatatagaactcatcgttatgctcacttccagt 624 ||||||||||||||| ||||| |||||||| || ||||| Sbjct: 1014 ctcatccatatagaattcatcattatgctcgctaccagt 976
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 accgatctcaaaccccttgct 669 ||||||||||||||||||||| Sbjct: 355403 accgatctcaaaccccttgct 355423 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,994,581 Number of Sequences: 3902068 Number of extensions: 5994581 Number of successful extensions: 97497 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97351 Number of HSP's gapped (non-prelim): 146 length of query: 731 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 708 effective length of database: 17,143,297,704 effective search space: 12137454774432 effective search space used: 12137454774432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)