ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11d15 |
|---|---|
| Clone Library Name | barley_pub |
>ACLY_MOUSE (Q91V92) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1091 Score = 175 bits (443), Expect = 1e-43 Identities = 84/152 (55%), Positives = 106/152 (69%) Frame = -2 Query: 624 NPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATA 445 NPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY EYSGAP E++ YA+ +L T Sbjct: 270 NPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTR 329 Query: 444 DPDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLA 265 + + L+IGG IANFT+VAATF GI+RA+R+ + LK V I+VRRGGPNYQ GL Sbjct: 330 EKHPEGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLR 389 Query: 264 KMRALGSELGLPIEVYGPEATMTGICKQAIDY 169 M +G G+PI V+G E MT I A+ + Sbjct: 390 VMGEVGKTTGIPIHVFGTETHMTAIVGMALGH 421
>ACLY_HUMAN (P53396) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1101 Score = 174 bits (442), Expect = 1e-43 Identities = 87/154 (56%), Positives = 109/154 (70%), Gaps = 2/154 (1%) Frame = -2 Query: 624 NPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATA 445 NPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY EYSGAP E++ YA+ +L T Sbjct: 270 NPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTR 329 Query: 444 D--PDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTG 271 + PDG + L+IGG IANFT+VAATF GI+RA+R+ + LK V I+VRRGGPNYQ G Sbjct: 330 EKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEG 387 Query: 270 LAKMRALGSELGLPIEVYGPEATMTGICKQAIDY 169 L M +G G+PI V+G E MT I A+ + Sbjct: 388 LRVMGEVGKTTGIPIHVFGTETHMTAIVGMALGH 421
>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 Score = 174 bits (440), Expect = 2e-43 Identities = 87/151 (57%), Positives = 107/151 (70%), Gaps = 2/151 (1%) Frame = -2 Query: 624 NPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATA 445 NPKGRIWTMVAGGGASV+Y+DT+ DLG +EL NY EYSGAP E++ YA+ +L T Sbjct: 270 NPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTR 329 Query: 444 D--PDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTG 271 + PDG + L+IGG IANFT+VAATF GI+RA+R+ + LK V I+VRRGGPNYQ G Sbjct: 330 EKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVTIFVRRGGPNYQEG 387 Query: 270 LAKMRALGSELGLPIEVYGPEATMTGICKQA 178 L M +G G+PI V+G E MT I A Sbjct: 388 LRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418
>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1106 Score = 165 bits (418), Expect = 9e-41 Identities = 86/153 (56%), Positives = 105/153 (68%), Gaps = 3/153 (1%) Frame = -2 Query: 624 NPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATA 445 N KGR+WTMVAGGGASV++ DTV DLG ASEL NY EYSG P E + YA+ +L T Sbjct: 281 NRKGRVWTMVAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTE 340 Query: 444 D---PDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQT 274 PDG+ L+IGG IANFT+VA TF GI+RA SKLK +V I+VRRGGPNYQ Sbjct: 341 GTPRPDGK--VLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQE 398 Query: 273 GLAKMRALGSELGLPIEVYGPEATMTGICKQAI 175 GL +++ ++L LPI V+GPE MT I A+ Sbjct: 399 GLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431
>SUCC1_STRCO (Q9KY56) Succinyl-CoA synthetase beta chain 1 (EC 6.2.1.5)| (SCS-beta 1) Length = 394 Score = 34.7 bits (78), Expect = 0.23 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Frame = -2 Query: 597 VAGGGASVIYADTVGDLGYASEL------GNYAEYSGAPKEEEVLHYARVVLDCATADPD 436 + G GA ++ + T+ + YA E N+ + G + + + ++L DPD Sbjct: 254 IIGNGAGLVMS-TLDVVAYAGEAHGNVKPANFLDIGGGASAQVMANGLEIIL----GDPD 308 Query: 435 GRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTG 271 R + + GGI +VA +GI++AL+ E + + + VR G N + G Sbjct: 309 VRSVFVNVFGGITACDEVA---NGIVQALKLLEDRGEKVEKPLVVRLDGNNAELG 360
>HCP_CHLTE (Q8KBT4) Hydroxylamine reductase (EC 1.7.-.-) (Hybrid-cluster| protein) (HCP) Length = 539 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = -2 Query: 564 DTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRK-RALLIGG--GIAN 394 D V L + + A +SG+ KEE + A +D +ADPD R ++L++ G G+A Sbjct: 89 DEVRALAGTTPAHDAANWSGSTKEEFLAKAAACSIDSLSADPDLRSLKSLILYGIKGLAA 148 Query: 393 FTDVAA 376 +TD AA Sbjct: 149 YTDHAA 154
>SUCC_METTH (O27115) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 365 Score = 31.2 bits (69), Expect = 2.6 Identities = 35/131 (26%), Positives = 53/131 (40%) Frame = -2 Query: 615 GRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATADPD 436 G I + G G ++ D + G E + + G E+ + R LD + P Sbjct: 237 GDIAVIGNGAGLTLTAMDLIKLNG---EPATFLDIGGGASEDVI----RRALDLVISHPS 289 Query: 435 GRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMR 256 R L + GGI DVA G++ ALR+ V + +R G N + G +R Sbjct: 290 VRVVFLNVLGGITRADDVA---RGVVNALRDARRD-----VPLVIRLTGTNEEEGQRILR 341 Query: 255 ALGSELGLPIE 223 E G+P E Sbjct: 342 ----EAGIPFE 348
>BCSA_SALTY (Q93IN2) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 30.8 bits (68), Expect = 3.4 Identities = 30/122 (24%), Positives = 49/122 (40%) Frame = -2 Query: 531 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 352 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRAHRVEIAMPGAIAREDGH----LFSCTVHDFSD-----GGLGIK 732 Query: 351 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAID 172 + + L+ +VN+ ++RG Y +R G+E+GL + M KQ ID Sbjct: 733 INGQAQVLEGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQL--------MPLTTKQHID 784 Query: 171 YV 166 +V Sbjct: 785 FV 786
>BCSA_SALTI (Q8Z291) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 30.8 bits (68), Expect = 3.4 Identities = 30/122 (24%), Positives = 49/122 (40%) Frame = -2 Query: 531 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 352 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRAHRVEIAMPGAIAREDGH----LFSCTVHDFSD-----GGLGIK 732 Query: 351 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAID 172 + + L+ +VN+ ++RG Y +R G+E+GL + M KQ ID Sbjct: 733 INGQAQVLEGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQL--------MPLTTKQHID 784 Query: 171 YV 166 +V Sbjct: 785 FV 786
>CHI2_CANAL (P40953) Chitinase 2 precursor (EC 3.2.1.14)| Length = 583 Score = 30.8 bits (68), Expect = 3.4 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -2 Query: 525 NYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIAN--FTDVAA 376 N+A G E +LH +++ D T G+ L +GGG+ + F+DVA+ Sbjct: 67 NFANQCGNTFESGLLHCSQIGADIKTCQSLGKTVLLSLGGGVGDYGFSDVAS 118
>PGK_DESVH (P62412) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 393 Score = 30.8 bits (68), Expect = 3.4 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -2 Query: 420 LLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSE 241 L++GGGIAN AA + + ++L E E +AAR+ +A RA G E Sbjct: 211 LIVGGGIANNFIKAAGYE-VGKSLYEPELVEEAARL--------------MAAARAAGGE 255 Query: 240 LGLPIE-VYGPE 208 + +P++ V GPE Sbjct: 256 IPVPLDVVVGPE 267
>TJAP1_MOUSE (Q9DCD5) Tight junction-associated protein 1 (Tight junction| protein 4) (Protein incorporated later into tight junctions) Length = 539 Score = 30.8 bits (68), Expect = 3.4 Identities = 23/63 (36%), Positives = 28/63 (44%) Frame = +2 Query: 434 PSGSAVAQSKTTLA*CKTSSSLGAPLYSA*FPSSEAYPKSPTVSAYMTLAPPPATIVQMR 613 PS A AQ S+L AP SA SSE + A++ PPPA +VQ Sbjct: 361 PSSPASAQGSPHHQPSPAPSALSAPASSA---SSEEDLLASWQRAFVDRTPPPAAVVQRT 417 Query: 614 PFG 622 FG Sbjct: 418 AFG 420
>PHSH_VICFA (P53537) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 842 Score = 30.4 bits (67), Expect = 4.4 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Frame = -2 Query: 441 PDGRK----RALLIGG-GIANFTD------VAATFSGIIRALREKESKLKAARVNIYVRR 295 P+ RK R ++IGG A +T+ + ++ + E S LK V Sbjct: 600 PEERKSTTARTVMIGGKAFATYTNAKRIVKLVDDVGSVVNSDPEVNSYLKVVFV------ 653 Query: 294 GGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAIDYVM 163 PNY +A++ GSEL I G EA+ T K A++ V+ Sbjct: 654 --PNYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFALNRVL 695
>BCSA_ECOLI (P37653) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 29.6 bits (65), Expect = 7.6 Identities = 24/102 (23%), Positives = 42/102 (41%) Frame = -2 Query: 531 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 352 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGH----LFSCTVQDFSD-----GGLGIK 732 Query: 351 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPI 226 + + L+ +VN+ ++RG Y R +G+E+GL + Sbjct: 733 INGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKL 774
>BCSA_ECO57 (Q8X5L7) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 29.6 bits (65), Expect = 7.6 Identities = 24/102 (23%), Positives = 42/102 (41%) Frame = -2 Query: 531 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 352 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGH----LFSCTVQDFSD-----GGLGIK 732 Query: 351 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPI 226 + + L+ +VN+ ++RG Y R +G+E+GL + Sbjct: 733 INGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKL 774
>UL76_HCMVA (P16725) Protein UL76| Length = 325 Score = 29.6 bits (65), Expect = 7.6 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -2 Query: 384 VAATFSGIIRALREKESKLKAARVNIYVR-RGGPNYQTGLAKMRALG 247 +AAT ++R R K + L AR + RGG N + GLA+ RA G Sbjct: 201 LAATRRRLLRTARGKRAALPRARASAVAGGRGGDNARRGLARGRAHG 247
>KDSA_SYNPX (Q7U9S3) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 283 Score = 29.3 bits (64), Expect = 9.9 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Frame = -2 Query: 432 RKRALLIGGGIANFTDVAATFSGIIRALRE--------KESKLKAARVNIYVRRGGPNYQ 277 R ALL G + D A +G + + E K S KA R +I+ RG P + Sbjct: 17 RPFALLGGVNVLEDLDFALRCAGHYKQVCERLGIPLVFKASYDKANRSSIHSFRG-PGLE 75 Query: 276 TGLAKMRALGSELGLPI--EVYGPE 208 GL ++A+ LG+P+ +V+ PE Sbjct: 76 AGLQILQAVKDTLGIPVITDVHSPE 100
>PLXC1_HUMAN (O60486) Plexin-C1 precursor (Virus-encoded semaphorin protein| receptor) Length = 1568 Score = 29.3 bits (64), Expect = 9.9 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = -2 Query: 489 EVLHYARVVLDCATADPDGRKRALLIGGGIANFTDV-AATFSGIIRALREKESKLKAA 319 EVL + LDC PDGR+ LL+ + DV A FS +E+ S A Sbjct: 272 EVLFQGQASLDCGHGHPDGRR--LLLSSSLVEALDVWAGVFSAAAGEGQERRSPTTTA 327
>PHEA_SYNY1 (P20778) C-phycoerythrin alpha chain| Length = 164 Score = 29.3 bits (64), Expect = 9.9 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = -2 Query: 432 RKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRA 253 +K + L G AN TD TF + LR+ + L+ ++ V GP + G+A R Sbjct: 61 KKYSYLNNAGEANSTD---TFKA--KCLRDIKHYLRLINYSLVVGGTGPLDEWGIAGQRE 115 Query: 252 LGSELGLPIEVY 217 + LGLP Y Sbjct: 116 VYRTLGLPTAPY 127
>RDXA_RHOS4 (Q01854) Protein rdxA| Length = 469 Score = 29.3 bits (64), Expect = 9.9 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -3 Query: 599 WLLVVVLVSYMLTRLEIWDMLQS*EIMPSTVELPKRRRFCIMLE-W---FWIVPLLILMA 432 W+L V L Y+LT WD + +++ RR F ++ W F+ V L++MA Sbjct: 27 WILAVSLGIYLLTPWLRWDRGPNLPDQAVLIDIAGRRFFLFGIQIWPHEFYFVAGLLIMA 86 Query: 431 GRELF 417 G LF Sbjct: 87 GLGLF 91
>PPOX_BACSU (P32397) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 470 Score = 29.3 bits (64), Expect = 9.9 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = -2 Query: 438 DGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGG 289 DG+K ++IGGGI T +AA F + + ++EK L+ V R GG Sbjct: 3 DGKKHVVIIGGGI---TGLAAAFY-MEKEIKEKNLPLELTLVEASPRVGG 48
>PGK_CHRVO (Q7P1M4) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 391 Score = 29.3 bits (64), Expect = 9.9 Identities = 23/67 (34%), Positives = 34/67 (50%) Frame = -2 Query: 420 LLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSE 241 L++GGGIAN T + A I ++L E + A RV +AK+RA G + Sbjct: 211 LIVGGGIAN-TFLLAEGKAIGKSLAEADLVEDARRV--------------IAKIRARGGD 255 Query: 240 LGLPIEV 220 + LP +V Sbjct: 256 VPLPADV 262
>ETFB_RAT (Q68FU3) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 29.3 bits (64), Expect = 9.9 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -2 Query: 354 ALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTG 193 A+R KE KL + I V G P Q + A+G++ G+ +EV G EA G Sbjct: 48 AVRLKEKKL--VKEIIAVSCGPPQCQETIRTALAMGADRGIHVEVPGAEAENLG 99
>GATD_SULSO (Q97ZH5) Glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.-)| (Glu-ADT subunit D) Length = 444 Score = 29.3 bits (64), Expect = 9.9 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +2 Query: 128 HRNYTMTNHASAMT*SMACLQIPVIVASGP*TSIGRPSSDPRARILASPV 277 H TM ASA+ S+ LQ PV++ G S RPSSD +L++ + Sbjct: 176 HGTDTMAYTASALAFSLRSLQGPVVLV-GSQRSSDRPSSDSAINLLSAVI 224 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,403,242 Number of Sequences: 219361 Number of extensions: 2139653 Number of successful extensions: 6338 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6331 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
