ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11d06 |
|---|---|
| Clone Library Name | barley_pub |
>MAF1_HUMAN (Q9H063) Repressor of RNA polymerase III transcription MAF1 homolog| Length = 256 Score = 55.8 bits (133), Expect = 1e-07 Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 3/103 (2%) Frame = -1 Query: 554 IKIRECDIYSYNPDSDGDPFLETGAMYGDLIHGNHA*IELKHSEGCSNV*MAFYFACRWS 375 I + ECDIYSYNPD D DPF E G++ WS Sbjct: 158 ICLAECDIYSYNPDLDSDPFGEDGSL--------------------------------WS 185 Query: 374 VNFFFYHRKLKRVVSFRCCCTSKFAGDDFLAGALSD---GEEE 255 N+FFY+++LKR+V F C S AG D GEEE Sbjct: 186 FNYFFYNKRLKRIVFFSCRSISGSTYTPSEAGNELDMELGEEE 228
>MAF1_BRARE (Q6PGU2) Repressor of RNA polymerase III transcription MAF1 homolog| Length = 247 Score = 55.8 bits (133), Expect = 1e-07 Identities = 30/84 (35%), Positives = 38/84 (45%) Frame = -1 Query: 554 IKIRECDIYSYNPDSDGDPFLETGAMYGDLIHGNHA*IELKHSEGCSNV*MAFYFACRWS 375 I + ECDIYSYNPD D DP+ E G + WS Sbjct: 157 ISLAECDIYSYNPDLDSDPYGEEGNL--------------------------------WS 184 Query: 374 VNFFFYHRKLKRVVSFRCCCTSKF 303 N+FFY+++LKR+V F C S F Sbjct: 185 FNYFFYNKRLKRIVFFTCRSVSLF 208
>MAF1_MOUSE (Q9D0U6) Repressor of RNA polymerase III transcription MAF1 homolog| Length = 258 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/78 (37%), Positives = 37/78 (47%) Frame = -1 Query: 554 IKIRECDIYSYNPDSDGDPFLETGAMYGDLIHGNHA*IELKHSEGCSNV*MAFYFACRWS 375 I + ECDIYSYNPD D DPF E G++ WS Sbjct: 158 ICLAECDIYSYNPDLDSDPFGEDGSL--------------------------------WS 185 Query: 374 VNFFFYHRKLKRVVSFRC 321 N+FFY+++LKR+V F C Sbjct: 186 FNYFFYNKRLKRIVFFSC 203
>YEJC_SCHPO (O14109) Hypothetical protein C31G5.12c in chromosome I| Length = 215 Score = 36.6 bits (83), Expect = 0.070 Identities = 20/74 (27%), Positives = 32/74 (43%) Frame = -1 Query: 554 IKIRECDIYSYNPDSDGDPFLETGAMYGDLIHGNHA*IELKHSEGCSNV*MAFYFACRWS 375 I + +C +YSY PDSD DP YGD A W Sbjct: 127 INLSDCSVYSYTPDSDSDP-------YGD-------------------------DALIWG 154 Query: 374 VNFFFYHRKLKRVV 333 +++FF+++ +KR++ Sbjct: 155 MSYFFFNKNMKRML 168
>DTD_LISIN (Q92BJ1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 150 Score = 32.7 bits (73), Expect = 1.0 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 580 VYTLFCNRLSKSGSVTSTATTQTLMEIHF*RQGPCTAILSMETM 449 +Y LF N+LS +G + T M++ GP T +L E M Sbjct: 105 LYNLFNNKLSDAGFIVETGVFGAFMDVKIVNNGPVTIMLDSEEM 148
>FZD7_HUMAN (O75084) Frizzled 7 precursor (Frizzled-7) (Fz-7) (hFz7) (FzE3)| Length = 574 Score = 32.0 bits (71), Expect = 1.7 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPRHP 271 G S+ +P T+ + +Y R HW + KS PC H PP P Sbjct: 472 GVFSVLYTVPATIVLACYFYEQAFREHWERTWLLQTCKSYAVPCPPGHFPPMSP 525
>FLGE_AQUAE (O67711) Flagellar hook protein flgE| Length = 482 Score = 31.2 bits (69), Expect = 2.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 156 PYELYITQTGHTGWLVMFLAEPSQSYVHVD 245 P ++Y +TG W V FLA + Y++VD Sbjct: 214 PADIYFVKTGTNQWKVYFLASLKERYINVD 243
>FZD2_RAT (Q08464) Frizzled 2 precursor (Frizzled-2) (Fz-2) (rFz2)| Length = 570 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPRHP 271 G S+ +P T+ I +Y R HW V KS+ PC + + P P Sbjct: 468 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQHCKSLAIPCPAHYTPRTSP 521
>FZD2_MOUSE (Q9JIP6) Frizzled 2 precursor (Frizzled-2) (Fz-2) (mFz2) (mFz10)| Length = 570 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPRHP 271 G S+ +P T+ I +Y R HW V KS+ PC + + P P Sbjct: 468 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQHCKSLAIPCPAHYTPRMSP 521
>FZD2_HUMAN (Q14332) Frizzled 2 precursor (Frizzled-2) (Fz-2) (hFz2) (FzE2)| Length = 565 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPRHP 271 G S+ +P T+ I +Y R HW V KS+ PC + + P P Sbjct: 463 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQHCKSLAIPCPAHYTPRMSP 516
>FZD1_XENLA (Q9I9M5) Frizzled 1 precursor (Frizzled-1) (Fz-1) (Xfz1)| Length = 559 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPRHP 271 G S+ +P T+ I +Y R W + K+ PC ST PP P Sbjct: 457 GIFSVLYTVPATIVIACYFYEQAFREQWEKSWISQSCKTYAIPCPSTGHPPMSP 510
>DTD_DESPS (Q6AS26) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 149 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 580 VYTLFCNRLSKSGSVTSTATTQTLMEIHF*RQGPCTAILSME 455 +Y LF + KSG +T Q M++ GP T +L E Sbjct: 105 IYDLFIEEVKKSGLEVATGIFQADMDVQLINDGPVTMLLDSE 146
>MRAW_WIGBR (Q8D2Y8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 309 Score = 30.0 bits (66), Expect = 6.5 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +3 Query: 303 KFASTAAAKAHYPLELPVVEEKVDRPSASKIKCHLHIRASLRVLKFN 443 KF + K YP +LP++E K+ + K+K I+ S + + +N Sbjct: 246 KFIINNSRKKIYPYKLPILESKIKNDNIYKLKYFKKIQPSKKEILYN 292
>FZD2_XENLA (Q9PUU6) Frizzled 2 precursor (Frizzled-2) (Fz-2) (Xfz2)| Length = 551 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPRHP 271 G S+ +P T+ I +Y R HW V KS+ PC + P P Sbjct: 449 GVFSVLYTVPATIVIACYFYEQAFREHWERSWVSQNCKSLAIPCPLQYTPRMTP 502
>FZD2_CHICK (Q9IA06) Frizzled 2 (Frizzled-2) (Fz-2) (cFz-2) (Fragment)| Length = 523 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +2 Query: 116 GTASIRSFLPGTVAIRAVYYTN--RSHWLVGHVPSRTKSVICPCRSTHLPPR 265 G S+ +P T+ I +Y R HW + KS+ PC H PR Sbjct: 421 GVFSVLYTVPATIVIACYFYEQAFRQHWERSWISQHCKSLAIPC-PLHFTPR 471 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,070,574 Number of Sequences: 219361 Number of extensions: 1920915 Number of successful extensions: 4913 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4909 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
