ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11c21 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 165 bits (418), Expect = 4e-41 Identities = 85/89 (95%), Positives = 85/89 (95%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY Sbjct: 171 DSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 230 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 VCKAQ DKRWFKGAKKFVENAAGSFSVA Sbjct: 231 VCKAQR-DKRWFKGAKKFVENAAGSFSVA 258
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 154 bits (390), Expect = 8e-38 Identities = 75/89 (84%), Positives = 80/89 (89%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GF+S VA+ANVLESS PVVDGKQYYSITVLTRTADGDEGGKHQ+I ATV DGKLY Sbjct: 179 DSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLY 238 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 +CKAQAGDKRWFKGAKKFVE+A SFSVA Sbjct: 239 ICKAQAGDKRWFKGAKKFVESATSSFSVA 267
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 152 bits (385), Expect = 3e-37 Identities = 72/89 (80%), Positives = 82/89 (92%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GF+++AVA AN+LESSAPV+ GKQYY+I+VLTRTADGDEGGKHQLITATV DGKLY Sbjct: 171 DSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLY 230 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 +CKAQAGDKRWFKGA+KFVE+ A SFSVA Sbjct: 231 ICKAQAGDKRWFKGARKFVEDTASSFSVA 259
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 150 bits (378), Expect = 2e-36 Identities = 73/89 (82%), Positives = 80/89 (89%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GFES AVATAN+LE+S+ V GKQYY ++VLTRTADGDEGGKHQLITATV DGKLY Sbjct: 172 DSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLY 231 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 +CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 232 ICKAQAGDKRWFKGAKKFVENAATSFSIA 260
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 147 bits (370), Expect = 2e-35 Identities = 71/89 (79%), Positives = 79/89 (88%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GFES AVAT N+LE+S+ V GK+YY ++VLTRTADGDEGGKHQLITATV DGKLY Sbjct: 170 DSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLY 229 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 +CKAQAGDKRWFKGAKKFVENAA SFS+A Sbjct: 230 ICKAQAGDKRWFKGAKKFVENAATSFSIA 258
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 145 bits (367), Expect = 4e-35 Identities = 71/88 (80%), Positives = 77/88 (87%) Frame = -1 Query: 403 SXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYV 224 S GFE +AV TAN+LE+S PVV GK YYSI VLTRTADGDEGGKH LITATV+DGKLY+ Sbjct: 178 SEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYI 237 Query: 223 CKAQAGDKRWFKGAKKFVENAAGSFSVA 140 CKAQAGDKRWFKGAKKFVE+AA SFS A Sbjct: 238 CKAQAGDKRWFKGAKKFVESAASSFSAA 265
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 145 bits (366), Expect = 5e-35 Identities = 70/89 (78%), Positives = 78/89 (87%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GFESDAVA ANVLE+S V GKQYY +++LTRTADG+EGGKHQL+TATV DGKLY Sbjct: 178 DSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLY 237 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 +CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 238 ICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 144 bits (363), Expect = 1e-34 Identities = 71/89 (79%), Positives = 78/89 (87%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GFESDAVA ANVLE+S+ V GK YY ++VLTRTADG+EGGKHQLITATV DGKLY Sbjct: 177 DSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLY 236 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 +CKAQAGDKRWFKGAKKFVEN A SFS+A Sbjct: 237 ICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 144 bits (362), Expect = 1e-34 Identities = 70/89 (78%), Positives = 79/89 (88%) Frame = -1 Query: 406 DSXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLY 227 DS GFES AVATAN+LE+S+ V GK+YY ++VLTRTADGDEGGKHQLI+ATV GKLY Sbjct: 180 DSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLY 239 Query: 226 VCKAQAGDKRWFKGAKKFVENAAGSFSVA 140 +CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 240 ICKAQAGDKRWFKGARKFVENAATSFSVA 268
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 144 bits (362), Expect = 1e-34 Identities = 69/88 (78%), Positives = 78/88 (88%) Frame = -1 Query: 403 SXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYV 224 S GF+ DAVATAN+LE++A V+GK YY ++VLTRTADGDEGGKHQLITATV DGKLY+ Sbjct: 176 SEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYI 235 Query: 223 CKAQAGDKRWFKGAKKFVENAAGSFSVA 140 CKAQAGDKRWFKGA+KFVE AA SFSVA Sbjct: 236 CKAQAGDKRWFKGARKFVEGAASSFSVA 263
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 142 bits (358), Expect = 4e-34 Identities = 67/88 (76%), Positives = 77/88 (87%) Frame = -1 Query: 403 SXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYV 224 S GF+ D+VATAN+LE S PVV GKQYY+I+VLTRTADGDEGGKH +I+ATV DGKLY+ Sbjct: 177 SEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYI 236 Query: 223 CKAQAGDKRWFKGAKKFVENAAGSFSVA 140 CKAQAGDKRWFKGAKKFVE+ SF+VA Sbjct: 237 CKAQAGDKRWFKGAKKFVESTTTSFNVA 264
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 140 bits (354), Expect = 1e-33 Identities = 67/88 (76%), Positives = 78/88 (88%) Frame = -1 Query: 403 SXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYV 224 S GF+++AVATAN+LE+S + GK+YY ++VLTRTADGDEGGKHQLITATV GKLY+ Sbjct: 178 SEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYI 237 Query: 223 CKAQAGDKRWFKGAKKFVENAAGSFSVA 140 CKAQAGDKRWFKGA+KFVENAA SFSVA Sbjct: 238 CKAQAGDKRWFKGARKFVENAATSFSVA 265
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 139 bits (351), Expect = 3e-33 Identities = 68/88 (77%), Positives = 78/88 (88%) Frame = -1 Query: 403 SXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYV 224 S GF+++AVATAN+LESS+ V GK YY ++VLTRTADGDEGGKHQLITATV GKLY+ Sbjct: 176 SEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYI 235 Query: 223 CKAQAGDKRWFKGAKKFVENAAGSFSVA 140 CKAQAGDKRWFKGA+KFVE+AA SFSVA Sbjct: 236 CKAQAGDKRWFKGARKFVESAATSFSVA 263
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 135 bits (339), Expect = 6e-32 Identities = 66/88 (75%), Positives = 75/88 (85%) Frame = -1 Query: 403 SXXGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYV 224 S GF+++AVATAN+LE++ V GK YY ++VLTRTADGDEGGKHQLITATV GKLY+ Sbjct: 173 SEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYI 232 Query: 223 CKAQAGDKRWFKGAKKFVENAAGSFSVA 140 CKAQAGDKRWFKGA KFVE AA SFSVA Sbjct: 233 CKAQAGDKRWFKGANKFVEKAATSFSVA 260
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 131 bits (329), Expect = 9e-31 Identities = 64/85 (75%), Positives = 73/85 (85%) Frame = -1 Query: 394 GFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKA 215 GF+++AVATAN+LE++ V GK YY ++VLTRTAD DEGGKHQLITATV GKLY+CKA Sbjct: 133 GFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKA 192 Query: 214 QAGDKRWFKGAKKFVENAAGSFSVA 140 QAGDKRWFKGA KFVE AA SFSVA Sbjct: 193 QAGDKRWFKGANKFVEKAATSFSVA 217
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 88.2 bits (217), Expect = 9e-18 Identities = 48/89 (53%), Positives = 59/89 (66%), Gaps = 2/89 (2%) Frame = -1 Query: 403 SXXGFESDAVATANVLESSAPV-VDGKQYYSITVLTRTADGDEGGKHQLITATV-ADGKL 230 S GF + V+ A++L+ S GK YY +L R+ADGDEGG+HQLI ATV +D KL Sbjct: 156 SEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKL 215 Query: 229 YVCKAQAGDKRWFKGAKKFVENAAGSFSV 143 Y+ K Q GDKRWFKGAKK A SF+V Sbjct: 216 YIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244
>MTP_PIG (Q865F1) Microsomal triglyceride transfer protein large subunit| precursor Length = 894 Score = 31.6 bits (70), Expect = 0.99 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 313 ITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFKGAK 179 + +L R+ DGD+ QLI T+ D K+ Q G+K FKG K Sbjct: 65 VVLLWRSPDGDDD---QLIQITIKDVKVENVNQQRGEKSIFKGKK 106
>MTP_BOVIN (P55156) Microsomal triglyceride transfer protein large subunit| precursor (Fragment) Length = 887 Score = 30.8 bits (68), Expect = 1.7 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 313 ITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFKGAK 179 + +L R+ DGD+ +QLI T+ D L Q G+K FKG K Sbjct: 58 VALLWRSPDGDD---NQLIQITMKDVNLENVNQQRGEKSIFKGKK 99
>NUOG_PSEFL (Q9KGW3) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 904 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = -1 Query: 373 ATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRW 194 A A+ L++SAP VDG + + R AD K LI A + G + +A A + Sbjct: 456 AVAHALDASAPAVDGLDSEAAALAQRIADALLAAKRPLIIAGTSLGSKALIEAAANIAKA 515 Query: 193 FKGAKK 176 K +K Sbjct: 516 LKLREK 521
>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 1 Length = 202 Score = 30.8 bits (68), Expect = 1.7 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +2 Query: 59 HACPGSVSTRCFPEEIP-LNSPIGHVYLCDTEGSCGVLDELLGALEPPLVSGLRLADVEL 235 HAC G T+ E+IP N+PI YL + + G +DE+ G + L S +++ + + Sbjct: 66 HACEGDAVTKLSQEKIPHFNAPI---YL-ENKTQIGKVDEIFGPINESLFS-IKMMEGIV 120 Query: 236 AVGDGGGDELVL 271 A GD+ + Sbjct: 121 ATSYSPGDKFFI 132
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 29.6 bits (65), Expect = 3.8 Identities = 22/73 (30%), Positives = 31/73 (42%) Frame = -1 Query: 361 VLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFKGA 182 VL S+ DG+ YY + H LITAT A +LY+ +W K Sbjct: 211 VLSSNVAEHDGRLYYQFELEP---------PHVLITATAAGNRLYLFSVTGNGLQW-KRH 260 Query: 181 KKFVENAAGSFSV 143 K ++ A SF + Sbjct: 261 YKDLKRIASSFRI 273
>PHSL_DESBA (P13065) Periplasmic [NiFeSe] hydrogenase large subunit (EC| 1.12.99.6) (NiFeSe hydrogenlyase large chain) Length = 513 Score = 28.9 bits (63), Expect = 6.4 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -1 Query: 355 ESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRWFK 188 +++ P DGK SI LTR EG H I V DGK+ K G R F+ Sbjct: 2 QAATPAADGKVKISIDPLTRV----EG--HLKIEVEVKDGKVVDAKCSGGMFRGFE 51
>NUOG_ECOLI (P33602) NADH-quinone oxidoreductase chain G (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) (NUO7) Length = 907 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -1 Query: 373 ATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRW 194 A A+ L++SAP VDG + + + G K LI + G L V +A A + Sbjct: 459 AIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKA 518 Query: 193 FKG 185 KG Sbjct: 519 LKG 521
>NUOG_ECO57 (Q8XCX2) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH| dehydrogenase I, chain G) (NDH-1, chain G) Length = 907 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/63 (31%), Positives = 29/63 (46%) Frame = -1 Query: 373 ATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQAGDKRW 194 A A+ L++SAP VDG + + + G K LI + G L V +A A + Sbjct: 459 AIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLEVIQAAANVAKA 518 Query: 193 FKG 185 KG Sbjct: 519 LKG 521
>TER_EUGGR (Q5EU90) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.44) Length = 539 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +3 Query: 276 PSSPSAVLVSTVML*YCLPSTTGAELSSTLAVATASDSKP 395 P+SPSA +VS L C+ + A S+ A++TAS P Sbjct: 4 PASPSAAVVSAGALCLCVATVLLATGSNPTALSTASTRSP 43 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,873,518 Number of Sequences: 219361 Number of extensions: 970497 Number of successful extensions: 2707 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2705 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
