ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11c17 |
|---|---|
| Clone Library Name | barley_pub |
>ATP7_ARATH (Q9SJ12) Probable ATP synthase 24 kDa subunit, mitochondrial| precursor (EC 3.6.3.14) Length = 240 Score = 131 bits (329), Expect = 2e-30 Identities = 68/127 (53%), Positives = 84/127 (66%) Frame = -1 Query: 654 IPDARTYLDTLQQLRKKNGLXXXXXXXXXXXXXXXXXXXXXXXXXMRNDRKNMGLLLAEF 475 IPDAR YL LQ++R + GL +R+D+K M LL+AEF Sbjct: 114 IPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEF 173 Query: 474 DKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRK 295 +K NKKLG RKEDLPK EE LE+ +AKA+L ELK + VEAME Q K+EEF+DEEMPDV+ Sbjct: 174 EKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKS 233 Query: 294 LDIRNFL 274 LDIRNF+ Sbjct: 234 LDIRNFI 240
>INVO_SAGOE (P24712) Involucrin| Length = 493 Score = 36.2 bits (82), Expect = 0.098 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDE--EMP 307 E K +++LG +KE L + E+ E Q+ E E E+ E EGQLK E +++ E+P Sbjct: 136 ELAKRDEQLGTKKEQLLEFPEQQEGQLKHLEQEEGHLELPEQQEGQLKNLEHQEKPLELP 195 Query: 306 DVRKLDIRN 280 + ++ +++ Sbjct: 196 EQQEGQLKH 204
>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)| [Contains: MAP1 light chain LC1] Length = 2459 Score = 36.2 bits (82), Expect = 0.098 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEE---ELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEM 310 E K K +K++ PK EE E++ +I K E ELKKEV + + ++E K +E Sbjct: 656 EVAKKEDKTPLKKDEKPKKEEAKKEIKKEIKKEEKKELKKEVKKETPLKDAKKEVKKDEK 715 Query: 309 PDVRK 295 +V+K Sbjct: 716 KEVKK 720
>MAP1B_MOUSE (P14873) Microtubule-associated protein 1B (MAP 1B) (MAP1.2)| (MAP1(X)) [Contains: MAP1 light chain LC1] Length = 2464 Score = 35.8 bits (81), Expect = 0.13 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEE---ELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEM 310 E K K +K++ P+ EE E++ +I K E ELKKEV + + ++E K EE Sbjct: 657 EVVKKEDKTPLKKDEKPRKEEVKKEIKKEIKKEERKELKKEVKKETPLKDAKKEVKKEEK 716 Query: 309 PDVRK 295 +V+K Sbjct: 717 KEVKK 721
>INVO_PONPY (P14708) Involucrin| Length = 835 Score = 35.4 bits (80), Expect = 0.17 Identities = 19/57 (33%), Positives = 33/57 (57%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEM 310 E K +++LG +KE L ++ E+ E + E E + E+ E EGQLK E ++ ++ Sbjct: 137 ELVKRDEQLGMKKEQLLELPEQQEQHLKHLEQQEGQLELPEQQEGQLKHLEQQEGQL 193
>NOP14_MOUSE (Q8R3N1) Probable nucleolar complex protein 14| Length = 860 Score = 35.0 bits (79), Expect = 0.22 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDV 301 E+D + ++LGF + P + E ++AK E LKK E + L ++E ++++ P Sbjct: 250 EYDMMVRELGFEMKAQPSNRMKTEEELAKEEQERLKKLEAERLRRMLGKDEHENKKKPKH 309 Query: 300 RKLDIRN 280 D N Sbjct: 310 TSADDLN 316
>RFCL_PYRFU (Q9UWR2) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (PfuRFC large subunit) Length = 479 Score = 34.7 bits (78), Expect = 0.28 Identities = 23/56 (41%), Positives = 33/56 (58%) Frame = -1 Query: 462 KKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRK 295 K+LG R+E+ PK+E E E + + E TE +KE +E K EE K+EE + K Sbjct: 416 KELGIREEEKPKVEIEEEEE--EEEKTEEEKEEIEE-----KPEEEKEEEKKEKEK 464
>INVO_HYLLA (P17941) Involucrin| Length = 522 Score = 34.7 bits (78), Expect = 0.28 Identities = 19/57 (33%), Positives = 34/57 (59%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEM 310 E K +++LG +KE L ++ E+ E Q+ E E + E+ E EGQL+ E ++ ++ Sbjct: 137 ELIKRDEQLGIKKEQLLELTEQQEGQLEHLEQQEGQLELPEQQEGQLEHLEQQEGQL 193
>INVO_AOTTR (P24708) Involucrin| Length = 544 Score = 34.3 bits (77), Expect = 0.37 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKD--EEMP 307 E K +++LG +KE L + E+ E Q+ E E E+ E EGQLK E ++ +E+P Sbjct: 137 ELAKSDEQLGTKKEQLLEFPEQQEGQLKCLEQQEGHLELPEQQEGQLKCLEQQEGHQELP 196 Query: 306 DVRKLDIRN 280 + ++ +++ Sbjct: 197 EQQEGQLKH 205
>INVO_PANPA (P14591) Involucrin| Length = 560 Score = 33.5 bits (75), Expect = 0.63 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREE 328 E K +++LG +KE L ++ E+ E + E E + E+ E EGQLK E Sbjct: 137 ELVKRDEQLGMKKEQLLELPEQQEGHLKHLEQREGQLELPEQQEGQLKHLE 187
>NOP5_HUMAN (Q9Y2X3) Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)| Length = 529 Score = 33.1 bits (74), Expect = 0.83 Identities = 17/54 (31%), Positives = 30/54 (55%) Frame = -1 Query: 474 DKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEE 313 D+I +K + + K+EEE E ++A+ E T +KK+ + +K E +EE Sbjct: 452 DEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKKHIKEEPLSEEE 505
>YLK6_CAEEL (P41954) Hypothetical protein D1044.6| Length = 1009 Score = 33.1 bits (74), Expect = 0.83 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = -1 Query: 489 LLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEM 310 L E ++ K+L FR+E L K E+E E +A+ EL++++ A+E +R+ + ++ Sbjct: 366 LRIEKERHQKELEFRREALRKREQEREEHKKRAQ-EELRRQMTAALEESTRRQAEMNRQI 424 Query: 309 PD-VRKLD 289 D RK D Sbjct: 425 EDEARKRD 432
>SMC4_CAEEL (Q20060) Structural maintenance of chromosome 4 (Protein smc-4)| Length = 1549 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Frame = -1 Query: 471 KINKKLGFRKEDLPKIEEELEMQIAKA---ELTELKKEVVEAMEGQLKREEFKDEEM 310 K ++ + +D+ K++++ E + KA E + KKE VE E Q+K+ + K EEM Sbjct: 949 KCDENISRHDKDIEKMKKKCEELMEKAIDDEEVKSKKETVERFEKQIKKLQTKGEEM 1005
>SYE_METJA (Q58772) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 553 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -1 Query: 513 NDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKR 334 N + +G+ L+E + K KE +P +E+ +E ++ K L E+KK++ E E K+ Sbjct: 21 NPKAVLGIFLSENPEYRSKA---KEVMPIVEKVVE-EVNKLSLDEIKKKLEELGEDVKKK 76 Query: 333 E-EFKDEEMPDVRKLDIRNF 277 E + K E+P+V+ + F Sbjct: 77 EKKEKGLELPNVKDKVVMRF 96
>THUM2_HUMAN (Q9BTF0) THUMP domain-containing protein 2| Length = 473 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = -1 Query: 516 RNDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLK 337 + D + + E + I KKL + E + KIEE + Q+ K ++K+E +E + K Sbjct: 97 QRDDNQLKRKVGENEIIAKKL--KIEQMQKIEENRDCQLEK----QIKEETLEQRDFTTK 150 Query: 336 REEFKDEEMP-DVRK-LDIRN 280 E+F++EE D+ K +D N Sbjct: 151 SEKFQEEEFQNDIEKAIDTHN 171
>MINC_THETN (Q8RBC0) Probable septum site-determining protein minC| Length = 214 Score = 32.3 bits (72), Expect = 1.4 Identities = 12/55 (21%), Positives = 35/55 (63%), Gaps = 5/55 (9%) Frame = -1 Query: 426 IEEELEMQIAKAELTELKKEVVEAMEG-----QLKREEFKDEEMPDVRKLDIRNF 277 ++E++++++ K + + ++ ++ EG ++K +FKDEE+ D++ ++N+ Sbjct: 19 VDEDVDIEVLKERIVDRIEKSLKFFEGATLNVRVKNSKFKDEELEDLKDFILKNY 73
>Y1201_AQUAE (O67257) Hypothetical protein aq_1201| Length = 112 Score = 31.6 bits (70), Expect = 2.4 Identities = 16/54 (29%), Positives = 31/54 (57%) Frame = -1 Query: 447 RKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRKLDI 286 R+E + EEL++ + EL EL++E + ME + +E +DE M ++ + + Sbjct: 23 RRESTTQTAEELKVPSMEKELEELRREFFKFMEFCIPPKEVRDEVMKNLYNIPL 76
>CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candidate gene 5| protein) (ALL1-fused gene from chromosome 15q14) (AF15q14) (D40/AF15q14 protein) Length = 2342 Score = 31.6 bits (70), Expect = 2.4 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 14/86 (16%) Frame = -1 Query: 516 RNDRKNMGLLLAEFDKINKK--------------LGFRKEDLPKIEEELEMQIAKAELTE 379 +N+R+ + + + E DKI KK L +++ P E + EM+ A+ EL + Sbjct: 2028 QNEREKLQIKIDEMDKILKKIDNCLTEMETETKNLEDEEKNNPVEEWDSEMRAAEKELEQ 2087 Query: 378 LKKEVVEAMEGQLKREEFKDEEMPDV 301 LK E E L+ E K++ + + Sbjct: 2088 LKTEEEELQRNLLELEVQKEQTLAQI 2113
>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)| (Proliferation-related protein p80) [Contains: MAP1 light chain LC2] Length = 2805 Score = 31.2 bits (69), Expect = 3.1 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = -1 Query: 474 DKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRK 295 DK+ KK KE + K+EE+ + E E+KKE E + + ++EE KD + + RK Sbjct: 398 DKVGKK--HLKEKISKLEEKKDK-----EKKEIKKERKELKKDEGRKEEKKDAKKEEKRK 450
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/48 (33%), Positives = 30/48 (62%) Frame = -1 Query: 444 KEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDV 301 KE++ +EEE E ++ + E E ++E E E Q ++EE ++E+ +V Sbjct: 277 KEEMTAVEEEEEEELVEEEEEEEEEEEQEEDEEQEQQEEEEEEQEEEV 324
>TIG_CAMJR (Q5HWX5) Trigger factor (TF)| Length = 444 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Frame = -1 Query: 474 DKINKKLGFRKEDLPK--IEEELEMQIAKAELTELKKEVVEAMEG----QLKREEFKDEE 313 D + +K F DLPK +E+E +MQ+ A T +KE+ E Q KR+ FK+E Sbjct: 299 DALIEKYNF---DLPKGIVEQETDMQMRAAFNTFSEKEIEELKASKEKYQEKRDSFKEEA 355 Query: 312 MPDVR 298 V+ Sbjct: 356 QKSVK 360
>TIG_CAMJE (Q46108) Trigger factor (TF)| Length = 444 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 6/65 (9%) Frame = -1 Query: 474 DKINKKLGFRKEDLPK--IEEELEMQIAKAELTELKKEVVEAMEG----QLKREEFKDEE 313 D + +K F DLPK +E+E +MQ+ A T +KE+ E Q KR+ FK+E Sbjct: 299 DALIEKYNF---DLPKGIVEQETDMQMRAAFNTFSEKEIEELKASKEKYQEKRDSFKEEA 355 Query: 312 MPDVR 298 V+ Sbjct: 356 QKSVK 360
>MAP1A_MOUSE (Q9QYR6) Microtubule-associated protein 1A (MAP 1A) (Fragment)| Length = 1021 Score = 30.8 bits (68), Expect = 4.1 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = -1 Query: 474 DKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRK 295 DK+ KK KE + K+EE+ + E E+KKE E + + ++EE KD + + RK Sbjct: 622 DKVGKK--HLKEKISKLEEKRDK-----EKKEIKKERKELKKEEGRKEEKKDAKKDEKRK 674
>SYS_BACSK (Q5WM19) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 424 Score = 30.4 bits (67), Expect = 5.4 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = -1 Query: 516 RNDRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQL- 340 + D+K+ L+AE ++++++ + E L IE ELE + + + +E V E + Sbjct: 63 KRDKKDANSLIAEMKQVSERIKEQDEQLRSIETELEALL--LTIPNIPQEDVPYGESEED 120 Query: 339 KREEFKDEEMPD 304 REE K ++PD Sbjct: 121 NREERKWGDVPD 132
>TRHY_HUMAN (Q07283) Trichohyalin| Length = 1898 Score = 30.4 bits (67), Expect = 5.4 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Frame = -1 Query: 447 RKEDLPKIEEELEMQIAKAELTE-----LKKEVVEAMEGQLKREEFKDEEMPD 304 R++ L K EEE Q K E E LK+E VE +E + +R+E E P+ Sbjct: 593 RRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEERRDERLKREEPE 645
>CLC4G_MOUSE (Q8BNX1) C-type lectin domain family 4 member G| Length = 294 Score = 30.4 bits (67), Expect = 5.4 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Frame = -1 Query: 486 LAEFDKINKKLGFRKEDLPKIEEELEMQIAKA--ELTELKKEVVEAMEGQLKREEFKDEE 313 LAEF I KL ++ L +++E + +AKA + ++ E+ +A+E +KR+ E+ Sbjct: 106 LAEFKDIQAKLMEQESILKELQERVTQDLAKASRDRENIRSELFQALEA-VKRQNSSCEQ 164 Query: 312 MP 307 P Sbjct: 165 CP 166
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 30.4 bits (67), Expect = 5.4 Identities = 16/50 (32%), Positives = 30/50 (60%) Frame = -1 Query: 444 KEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEMPDVRK 295 +ED + E+E E + + E E ++E V+ G+ K+E K +E+P+ +K Sbjct: 246 EEDEDEEEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKK 295
>TRME_PROMA (Q7VE01) tRNA modification GTPase trmE| Length = 455 Score = 30.4 bits (67), Expect = 5.4 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = -1 Query: 489 LLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDE-- 316 LL + +I ++ F +EDLPK+ + + ELK+ + +A +G L R K Sbjct: 174 LLDQLSEIEARIDF-EEDLPKLNSKKLLTDLMLIRAELKQLINDAKQGSLIRNGLKVALV 232 Query: 315 EMPDVRKLDIRNFL 274 +P+V K I N L Sbjct: 233 GLPNVGKSSILNLL 246
>ECX1_METMA (Q8PTT8) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 493 Score = 30.0 bits (66), Expect = 7.0 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 10/72 (13%) Frame = -1 Query: 474 DKINKKLGFRKEDLPKIEEELEMQIAKAE----------LTELKKEVVEAMEGQLKREEF 325 ++I ++L +EDL EEE E + + E L E E +E E +L+ EEF Sbjct: 305 EEIEEELEESEEDLETEEEEFEEEALEEEAEPEEDLEEDLEEDLGEELEEEEEELEEEEF 364 Query: 324 KDEEMPDVRKLD 289 ++E + + +L+ Sbjct: 365 EEEALEEETELE 376
>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase| Length = 883 Score = 30.0 bits (66), Expect = 7.0 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = -1 Query: 489 LLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVE--AMEGQLK 337 L+A +++ K+L +E++ K+E E+ Q A+ E+ KE+ E + G+LK Sbjct: 370 LMANLERLKKRLTLSEEEIEKLEAEI--QKARERKEEIMKELEEIGSRRGELK 420
>TIG_THETN (Q8RC26) Trigger factor (TF)| Length = 432 Score = 30.0 bits (66), Expect = 7.0 Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -1 Query: 444 KEDLPKIEEELEMQIAKAE-LTELKKEVVEAMEGQLKREEFKDEEMPDVRKLDIRNFL*V 268 K++LP++++E +++ E L ELK+++ + +E + KRE + + V K+ + + Sbjct: 244 KKELPELDDEFAKDVSEFETLEELKQDIRKKLEEKNKREAENEMKEKAVMKVVENAKVDI 303 Query: 267 PD 262 PD Sbjct: 304 PD 305
>UN84A_HUMAN (O94901) Sad1/unc-84 protein-like 1 (Unc-84 homolog A)| Length = 812 Score = 30.0 bits (66), Expect = 7.0 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 126 PWSWVSGVESFVSSLGWQREH 64 PW W+SGVE V+SL Q H Sbjct: 385 PWHWMSGVEQQVASLSGQCHH 405
>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)| Length = 1947 Score = 30.0 bits (66), Expect = 7.0 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = -1 Query: 510 DRKNMGLLLAEFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVE 358 D+KN L +K+ KL +K+ L + EE+ ++K +L E E Sbjct: 1873 DKKNYDKLQELVEKLTAKLKLQKKQLEEAEEQANSHLSKYRTVQLSLETAE 1923
>MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smooth muscle)| Length = 1978 Score = 30.0 bits (66), Expect = 7.0 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIA--KAELTELKKEVVEAMEGQLKREEFKDEEMP 307 E +KI +KL DL + EL+ QIA KA+L + ++E+ A+ K+ + Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116 Query: 306 DVRKLD 289 +R+L+ Sbjct: 1117 KIRELE 1122
>TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily member 19| precursor (Toxicity and JNK inducer) (TRADE) Length = 416 Score = 30.0 bits (66), Expect = 7.0 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Frame = +2 Query: 23 KYNSSRRHIFSNARCSRCQPKEETKLSTPETQLHGCI--FGAVLLQRARTS----VGCGL 184 +YN S F R C + + ++G + ++ + AR+S +GCGL Sbjct: 212 QYNGSELSCFDQPRLRHCAHRACCQYHRDSAPMYGPVHLIPSLCCEEARSSARAVLGCGL 271 Query: 185 KHRLSLEKKNHRSIG 229 + +L+++N S+G Sbjct: 272 RSPTTLQERNPASVG 286
>BFR2_EMENI (Q5AW04) Protein bfr2| Length = 576 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%) Frame = +3 Query: 21 LNTTAAAGTYSATLDVHVASLRKKQNSQRQK--------PNSTVVFSVQFYYK 155 L T+ A T +A LD HVAS ++S+R K PN V+ +Y+ Sbjct: 394 LGTSGAQQTITAVLDAHVASETTDRSSKRLKSTQGSTSDPNEVKVYDDTIFYQ 446
>RF1_FUSNN (Q8R5W0) Peptide chain release factor 1 (RF-1)| Length = 365 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = -1 Query: 474 DKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEG 346 + +N++L +E LPK+EEEL++ + + + K +VE G Sbjct: 83 EMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRGG 125
>IF2_CAMJR (Q5HX30) Translation initiation factor IF-2| Length = 871 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 21/85 (24%) Frame = -1 Query: 471 KINKKLGFRKEDLPKIEEELEMQIAKAELT--------ELKKEVVEAMEGQ-------LK 337 K +KL ++ PK EE+L+ ++ K EL E K+E+++A + Q K Sbjct: 77 KEQEKLNESEKKEPKKEEKLKQEVKKEELKIEKENAKEEEKQEIIDAHKPQSLASATLAK 136 Query: 336 R------EEFKDEEMPDVRKLDIRN 280 R ++ KDEE V+K +++N Sbjct: 137 RRGLVIVKKKKDEEEIQVKKEEVKN 161
>IF2_CAMJE (Q9PIZ1) Translation initiation factor IF-2| Length = 871 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 21/85 (24%) Frame = -1 Query: 471 KINKKLGFRKEDLPKIEEELEMQIAKAELT--------ELKKEVVEAMEGQ-------LK 337 K +KL ++ PK EE+L+ ++ K EL E K+E+++A + Q K Sbjct: 77 KEQEKLNESEKKEPKKEEKLKQEVKKEELKIEKENAKEEEKQEIIDAHKPQSLASATLAK 136 Query: 336 R------EEFKDEEMPDVRKLDIRN 280 R ++ KDEE V+K +++N Sbjct: 137 RRGLVIVKKKKDEEEIQVKKEEVKN 161
>INVO_HUMAN (P07476) Involucrin| Length = 585 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = -1 Query: 480 EFDKINKKLGFRKEDLPKIEEELEMQIAKAELTELKKEVVEAMEGQLKREEFKDEEM 310 E K +++LG +KE L ++ E+ E + E E + + E EGQL+ E ++ ++ Sbjct: 137 ELVKRDEQLGMKKEQLLELPEQQEGHLKHLEQQEGQLKHPEQQEGQLELPEQQEGQL 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,312,638 Number of Sequences: 219361 Number of extensions: 1478465 Number of successful extensions: 6302 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 5895 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6249 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
