ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27... 75 1e-13
2PE2R1_CANFA (Q9BGL8) Prostaglandin E2 receptor, EP1 subtype (Pro... 32 1.2
3SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin) 32 1.2
4RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa la... 31 2.1
5RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa la... 30 4.6
6RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa lami... 30 4.6
7RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa la... 30 4.6
8RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa la... 30 4.6
9RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein) 30 4.6

>UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27950 precursor|
          Length = 193

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
 Frame = -1

Query: 547 DTQRARPECLCNIIQQVHSGSHGVQQLGLRFDRLLAQPAACKLANANVSLCINLLHLTPS 368
           D +   P+CLC +IQQ  +G   ++ LG++ D+L+  P +C+L NA+++ C  LL ++PS
Sbjct: 66  DIKERDPKCLCFVIQQAKTGGQALKDLGVQEDKLIQLPTSCQLHNASITNCPKLLGISPS 125

Query: 367 SPDYALFANASKITP------STAAPARDTADGFKVPTGLGYGIM 251
           SPD A+F N +  TP      S A PA  T  G       G+ ++
Sbjct: 126 SPDAAVFTNNATTTPVAPAGKSPATPATSTDKGGSASAKDGHAVV 170



to top

>PE2R1_CANFA (Q9BGL8) Prostaglandin E2 receptor, EP1 subtype (Prostanoid EP1|
           receptor) (PGE receptor, EP1 subtype)
          Length = 403

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 405 TLALASLQAAGWARRRSKRRPSCCTP 482
           TL+  +L  A W RRRS+RRP  C P
Sbjct: 226 TLSGLALLRARWRRRRSRRRPQACGP 251



to top

>SRC8_CHICK (Q01406) Src substrate protein p85 (p80) (Cortactin)|
          Length = 563

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 82  RTNPRTTVPSKASSLRGNLQSYV--NKQDDRRKGEDGRA 192
           +T P   V +K SS+R NL++     +Q+DRRK E  RA
Sbjct: 345 KTKPVERVANKTSSIRANLENLAKEKEQEDRRKAEAERA 383



to top

>RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -2

Query: 294 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 145
           P A RF  G+ T    A++R P  L+ + P +D +  T  S ++ P+I L        Y+
Sbjct: 97  PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLAYV 156

Query: 144 TLQVPTQRR 118
            + +P   +
Sbjct: 157 DIAIPCNNK 165



to top

>RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor) (37LRP)
          Length = 296

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -2

Query: 294 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 145
           P A RF  G+ T    A++R P  L+ + P +D +  T  S ++ P+I L        Y+
Sbjct: 98  PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALCNTDSPLRYV 157

Query: 144 TLQVPTQRR 118
            + +P   +
Sbjct: 158 DIAIPCNNK 166



to top

>RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -2

Query: 294 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 145
           P A RF  G+ T    A++R P  L+ + P +D +  T  S ++ P+I L        Y+
Sbjct: 97  PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156

Query: 144 TLQVPTQRR 118
            + +P   +
Sbjct: 157 DIAIPCNNK 165



to top

>RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor) (Colon carcinoma laminin-binding protein)
           (NEM/1CHD4) (Multidrug resistance-associated protein
           MGr1-Ag)
          Length = 294

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -2

Query: 294 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 145
           P A RF  G+ T    A++R P  L+ + P +D +  T  S ++ P+I L        Y+
Sbjct: 97  PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156

Query: 144 TLQVPTQRR 118
            + +P   +
Sbjct: 157 DIAIPCNNK 165



to top

>RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -2

Query: 294 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 145
           P A RF  G+ T    A++R P  L+ + P +D +  T  S ++ P+I L        Y+
Sbjct: 97  PIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156

Query: 144 TLQVPTQRR 118
            + +P   +
Sbjct: 157 DIAIPCNNK 165



to top

>RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)|
          Length = 294

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = -2

Query: 294 PTASRFRRGSVT----ASWRRPWSLLSSHPSSDFRTTTRPSILSFPSIIL------FVYI 145
           P A RF  G+ T    A++R P  L+ + P +D +  T  S ++ P+I L        Y+
Sbjct: 97  PIAGRFTPGNFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYV 156

Query: 144 TLQVPTQRR 118
            + +P   +
Sbjct: 157 DIAIPCNNK 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,605,586
Number of Sequences: 219361
Number of extensions: 1134740
Number of successful extensions: 3912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3911
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top