ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483501.1| Oryza sativa (japonica cultivar-group), mRNA 200 3e-48
2ref|XM_483500.1| Oryza sativa (japonica cultivar-group), mRNA 200 3e-48
3ref|XM_507304.2| PREDICTED Oryza sativa (japonica cultivar-group... 200 3e-48
4ref|XM_507597.1| PREDICTED Oryza sativa (japonica cultivar-group... 200 3e-48
5dbj|AK104251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
6dbj|AK067802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
7dbj|AK061387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
8dbj|AK061214.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
10dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
11gb|AC113166.1| Homo sapiens chromosome 5 clone RP11-302K24, comp... 48 0.031
12gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, comple... 46 0.12
13gb|AC163666.2| Mus musculus BAC clone RP23-46B12 from chromosome... 42 1.9
14ref|NM_187525.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.9
16ref|XM_843399.1| PREDICTED: Canis familiaris similar to adrenome... 42 1.9
17gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complet... 42 1.9
18gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete s... 42 1.9
19gb|AC154303.2| Mus musculus BAC clone RP23-387F19 from chromosom... 42 1.9
20gb|AC097262.10| Homo sapiens X BAC RP11-268G12 (Roswell Park Can... 42 1.9
21dbj|AK040448.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 42 1.9
22gb|AC154361.2| Mus musculus BAC clone RP23-170I24 from chromosom... 42 1.9
23gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
24dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
26dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
27dbj|AK058971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
28gb|L19340.1|MLGURO2X Molgula oculata leucine zipper protein (Uro... 42 1.9
29emb|CT573091.1| Pan troglodytes chromosome X BAC RP43-060K07, co... 42 1.9
30emb|CT030259.6| Mouse DNA sequence from clone RP24-529L21 on chr... 42 1.9
31gb|AC135634.4| Mus musculus BAC clone RP23-121I20 from 9, comple... 42 1.9
32emb|CT030710.7| Mouse DNA sequence from clone RP23-386A10 on chr... 42 1.9
33ref|XM_599218.2| PREDICTED: Bos taurus similar to glucose-fructo... 40 7.5
34gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 7.5
35ref|XM_545344.2| PREDICTED: Canis familiaris similar to glucose-... 40 7.5
36emb|CR759732.9| Zebrafish DNA sequence from clone DKEY-183E23 in... 40 7.5
37gb|AC146247.3| Pan troglodytes BAC clone RP43-27N23 from 7, comp... 40 7.5
38gb|AC096562.1| Homo sapiens BAC clone RP11-261E4 from 7, complet... 40 7.5
39emb|AL049647.7|HSJ1027G4 Human DNA sequence from clone RP5-1027G... 40 7.5
40emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 7.5
41emb|BX323998.7| Zebrafish DNA sequence from clone DKEYP-2C6 in l... 40 7.5
42gb|AF507046.1| Meiothermus ruber dnaK operon, complete sequence 40 7.5
43gb|AC159187.2| Mus musculus BAC clone RP24-226L7 from chromosome... 40 7.5
44gb|AF538231.1| Euphorbia myrsinites NADH dehydrogenase subunit F... 40 7.5
45gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.5
46gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh... 40 7.5
47gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, co... 40 7.5 
>ref|XM_483501.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 841

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 493 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 434

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 433 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 374

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 373 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 314

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 313 gtagcacaggcactcgggccgcgcc 289



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 632 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 573

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 572 gccccgcctgaaccttgaagccgccggcggtg 541
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>ref|XM_483500.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 930

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 492 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 433

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 432 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 373

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 372 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 313

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 312 gtagcacaggcactcgggccgcgcc 288



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 628 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 569

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 568 gccccgcctgaaccttgaagccgccggcggtg 537
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>ref|XM_507304.2| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.24-2
           mRNA
          Length = 950

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 492 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 433

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 432 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 373

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 372 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 313

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 312 gtagcacaggcactcgggccgcgcc 288



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 628 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 569

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 568 gccccgcctgaaccttgaagccgccggcggtg 537
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>ref|XM_507597.1| PREDICTED Oryza sativa (japonica cultivar-group), P0702E04.24-2
           mRNA
          Length = 986

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 492 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 433

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 432 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 373

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 372 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 313

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 312 gtagcacaggcactcgggccgcgcc 288



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 631 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 572

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 571 gccccgcctgaaccttgaagccgccggcggtg 540
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>dbj|AK104251.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A04, full
           insert sequence
          Length = 930

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 492 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 433

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 432 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 373

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 372 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 313

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 312 gtagcacaggcactcgggccgcgcc 288



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 628 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 569

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 568 gccccgcctgaaccttgaagccgccggcggtg 537
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>dbj|AK067802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120P05, full
           insert sequence
          Length = 841

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 493 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 434

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 433 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 374

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 373 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 314

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 313 gtagcacaggcactcgggccgcgcc 289



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 632 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 573

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 572 gccccgcctgaaccttgaagccgccggcggtg 541
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>dbj|AK061387.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A08, full
           insert sequence
          Length = 950

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 492 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 433

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 432 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 373

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 372 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 313

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 312 gtagcacaggcactcgggccgcgcc 288



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 628 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 569

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 568 gccccgcctgaaccttgaagccgccggcggtg 537
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>dbj|AK061214.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-D09, full
           insert sequence
          Length = 986

 Score =  200 bits (101), Expect = 3e-48
 Identities = 179/205 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggtt 391
           |||||| || || |||||||  |||||||| || ||||| ||||||||||||||||||||
Sbjct: 492 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggtt 433

                                                                       
Query: 392 gatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggcg 451
           |||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||
Sbjct: 432 gatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggcg 373

                                                                       
Query: 452 gtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatgat 511
           ||||||||||||||| |||  ||| ||  |||  | ||||| ||||||||||||||||||
Sbjct: 372 gtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatgat 313

                                    
Query: 512 attgcagaggcactcgggccgcgcc 536
            | ||| ||||||||||||||||||
Sbjct: 312 gtagcacaggcactcgggccgcgcc 288



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 208 atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
           |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 631 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 572

                                           
Query: 268 gccccgtcggaaccttgaagccgtcggcggtg 299
           |||||| | |||||||||||||| ||||||||
Sbjct: 571 gccccgcctgaaccttgaagccgccggcggtg 540
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  147 bits (74), Expect = 4e-32
 Identities = 128/146 (87%)
 Strand = Plus / Plus

                                                                            
Query: 391      tgatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggc 450
                ||||||||||||||||||||||||||| |||||||||||||| ||||  ||| |||||||
Sbjct: 26549347 tgatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggc 26549406

                                                                            
Query: 451      ggtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatga 510
                |||||||||||||||| |||  ||| ||  |||  | ||||| |||||||||||||||||
Sbjct: 26549407 ggtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatga 26549466

                                          
Query: 511      tattgcagaggcactcgggccgcgcc 536
                | | ||| ||||||||||||||||||
Sbjct: 26549467 tgtagcacaggcactcgggccgcgcc 26549492



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                            
Query: 208      atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
                |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 26547272 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 26547331

                                                
Query: 268      gccccgtcggaaccttgaagccgtcggcggtg 299
                |||||| | |||||||||||||| ||||||||
Sbjct: 26547332 gccccgcctgaaccttgaagccgccggcggtg 26547363



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 332      cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggt 390
                |||||| || || |||||||  |||||||| || ||||| |||||||||||||||||||
Sbjct: 26548039 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggt 26548097
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>dbj|AP005529.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0702E04
          Length = 190948

 Score =  147 bits (74), Expect = 4e-32
 Identities = 128/146 (87%)
 Strand = Plus / Plus

                                                                         
Query: 391   tgatgcagagggagacgttggcgttggcgagcttgcaggcggcgggctgggccaggaggc 450
             ||||||||||||||||||||||||||| |||||||||||||| ||||  ||| |||||||
Sbjct: 98214 tgatgcagagggagacgttggcgttggggagcttgcaggcggtgggcatggcgaggaggc 98273

                                                                         
Query: 451   ggtcgaagcggaggccaagctgctgcacgccgtggctgccgctgtgcacctgctggatga 510
             |||||||||||||||| |||  ||| ||  |||  | ||||| |||||||||||||||||
Sbjct: 98274 ggtcgaagcggaggccgagcgactggacctcgttccggccgccgtgcacctgctggatga 98333

                                       
Query: 511   tattgcagaggcactcgggccgcgcc 536
             | | ||| ||||||||||||||||||
Sbjct: 98334 tgtagcacaggcactcgggccgcgcc 98359



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                         
Query: 208   atcagaagatggatgagaagacagcagagaccacggccgccgccatgatgccgtaaccga 267
             |||||||||||||||||||||| ||||| ||||  |||||||| | || |||||| | ||
Sbjct: 96139 atcagaagatggatgagaagacggcagaaaccatcgccgccgcgacgacgccgtagctga 96198

                                             
Query: 268   gccccgtcggaaccttgaagccgtcggcggtg 299
             |||||| | |||||||||||||| ||||||||
Sbjct: 96199 gccccgcctgaaccttgaagccgccggcggtg 96230



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 332   cttggaagcatttgcgaagagggcgtagtctggcgagctcggggtcaggtgcagcaggt 390
             |||||| || || |||||||  |||||||| || ||||| |||||||||||||||||||
Sbjct: 96906 cttggaggcgttggcgaagacagcgtagtccggtgagcttggggtcaggtgcagcaggt 96964
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>gb|AC113166.1| Homo sapiens chromosome 5 clone RP11-302K24, complete sequence
          Length = 187279

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 166   agaaggaaaggagaggatggaagg 189
             ||||||||||||||||||||||||
Sbjct: 87045 agaaggaaaggagaggatggaagg 87068
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>gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, complete sequence
          Length = 171554

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 168   aaggaaaggagaggatggaaggg 190
             |||||||||||||||||||||||
Sbjct: 80949 aaggaaaggagaggatggaaggg 80971
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>gb|AC163666.2| Mus musculus BAC clone RP23-46B12 from chromosome 9, complete
            sequence
          Length = 213408

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 166  agaaggaaaggagaggatggaaggg 190
            ||||||||||||||||| |||||||
Sbjct: 7311 agaaggaaaggagaggagggaaggg 7287
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>ref|NM_187525.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 428 ggcggcgggctgggccaggaggcggtcga 456
           ||||||| ||| |||||||||||||||||
Sbjct: 75  ggcggcgagctcggccaggaggcggtcga 47
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 428     ggcggcgggctgggccaggaggcggtcga 456
               ||||||| ||| |||||||||||||||||
Sbjct: 8629071 ggcggcgagctcggccaggaggcggtcga 8629043
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>ref|XM_843399.1| PREDICTED: Canis familiaris similar to adrenomedullin 2 precusor
           (LOC606919), mRNA
          Length = 783

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 428 ggcggcgggctgggccaggag 448
           |||||||||||||||||||||
Sbjct: 303 ggcggcgggctgggccaggag 283
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>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence
          Length = 211411

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 166    agaaggaaaggagaggatgga 186
              |||||||||||||||||||||
Sbjct: 176780 agaaggaaaggagaggatgga 176800
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>gb|AC149804.11| Medicago truncatula clone mth2-73h22, complete sequence
          Length = 121763

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 150   aaacaaacaggatgatagaaggaaa 174
             ||||||| |||||||||||||||||
Sbjct: 58645 aaacaaaaaggatgatagaaggaaa 58669
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>gb|AC154303.2| Mus musculus BAC clone RP23-387F19 from chromosome 14, complete sequence
          Length = 199995

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    aaatcagaagatggatgagaa 226
              |||||||||||||||||||||
Sbjct: 176594 aaatcagaagatggatgagaa 176614
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>gb|AC097262.10| Homo sapiens X BAC RP11-268G12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184942

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 501    tgctggatgatattgcagaggcact 525
              ||||||||||| |||||||||||||
Sbjct: 126083 tgctggatgatcttgcagaggcact 126107
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>dbj|AK040448.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430098E24 product:unclassifiable, full
            insert sequence
          Length = 3257

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 166  agaaggaaaggagaggatggaaggg 190
            ||||||||||||||||| |||||||
Sbjct: 3119 agaaggaaaggagaggagggaaggg 3095
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>gb|AC154361.2| Mus musculus BAC clone RP23-170I24 from chromosome 14, complete
             sequence
          Length = 202760

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   aaatcagaagatggatgagaa 226
             |||||||||||||||||||||
Sbjct: 53435 aaatcagaagatggatgagaa 53455
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>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02,
              complete sequence
          Length = 137327

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 428    ggcggcgggctgggccaggaggcggtcga 456
              ||||||| ||| |||||||||||||||||
Sbjct: 110043 ggcggcgagctcggccaggaggcggtcga 110015
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 428     ggcggcgggctgggccaggaggcggtcga 456
               ||||||| ||| |||||||||||||||||
Sbjct: 8626906 ggcggcgagctcggccaggaggcggtcga 8626878
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 444      aggaggcggtcgaagcggagg 464
                |||||||||||||||||||||
Sbjct: 10722584 aggaggcggtcgaagcggagg 10722564
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>dbj|AP002820.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702D12
          Length = 137332

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 444   aggaggcggtcgaagcggagg 464
             |||||||||||||||||||||
Sbjct: 45398 aggaggcggtcgaagcggagg 45378
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>dbj|AK058971.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D01, full
           insert sequence
          Length = 1849

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 428 ggcggcgggctgggccaggaggcggtcga 456
           ||||||| ||| |||||||||||||||||
Sbjct: 355 ggcggcgagctcggccaggaggcggtcga 327
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>gb|L19340.1|MLGURO2X Molgula oculata leucine zipper protein (Uro-2) mRNA, complete cds
          Length = 1836

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 157 caggatgatagaaggaaagga 177
           |||||||||||||||||||||
Sbjct: 199 caggatgatagaaggaaagga 219
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>emb|CT573091.1| Pan troglodytes chromosome X BAC RP43-060K07, complete sequence
          Length = 121895

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 501   tgctggatgatattgcagaggcact 525
             ||||||||||| |||||||||||||
Sbjct: 78218 tgctggatgatcttgcagaggcact 78242
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>emb|CT030259.6| Mouse DNA sequence from clone RP24-529L21 on chromosome 9, complete
              sequence
          Length = 196590

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 166    agaaggaaaggagaggatggaaggg 190
              ||||||||||||||||| |||||||
Sbjct: 141151 agaaggaaaggagaggagggaaggg 141127
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>gb|AC135634.4| Mus musculus BAC clone RP23-121I20 from 9, complete sequence
          Length = 209177

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 166   agaaggaaaggagaggatggaaggg 190
             ||||||||||||||||| |||||||
Sbjct: 70562 agaaggaaaggagaggagggaaggg 70586
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>emb|CT030710.7| Mouse DNA sequence from clone RP23-386A10 on chromosome 9, complete
              sequence
          Length = 206562

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 166    agaaggaaaggagaggatggaaggg 190
              ||||||||||||||||| |||||||
Sbjct: 115352 agaaggaaaggagaggagggaaggg 115376
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>ref|XM_599218.2| PREDICTED: Bos taurus similar to glucose-fructose oxidoreductase
           domain containing 1, transcript variant 1 (LOC520966),
           mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 ggctgccgctgtgcacctgc 503
           ||||||||||||||||||||
Sbjct: 475 ggctgccgctgtgcacctgc 456
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 478     cgccgtggctgccgctgtgc 497
               ||||||||||||||||||||
Sbjct: 3875142 cgccgtggctgccgctgtgc 3875123
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>ref|XM_545344.2| PREDICTED: Canis familiaris similar to glucose-fructose
           oxidoreductase domain containing 1 (LOC488222), mRNA
          Length = 1184

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 484 ggctgccgctgtgcacctgc 503
           ||||||||||||||||||||
Sbjct: 370 ggctgccgctgtgcacctgc 351
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>emb|CR759732.9| Zebrafish DNA sequence from clone DKEY-183E23 in linkage group 14,
              complete sequence
          Length = 225630

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     acttatctggggtaaaacaa 69
              ||||||||||||||||||||
Sbjct: 215479 acttatctggggtaaaacaa 215498
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>gb|AC146247.3| Pan troglodytes BAC clone RP43-27N23 from 7, complete sequence
          Length = 157530

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tcagaagatggatgagaaga 228
             ||||||||||||||||||||
Sbjct: 90806 tcagaagatggatgagaaga 90825
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>gb|AC096562.1| Homo sapiens BAC clone RP11-261E4 from 7, complete sequence
          Length = 138224

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tcagaagatggatgagaaga 228
             ||||||||||||||||||||
Sbjct: 88294 tcagaagatggatgagaaga 88313
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>emb|AL049647.7|HSJ1027G4 Human DNA sequence from clone RP5-1027G4 on chromosome 20 Contains part
             of the SLC24A3 gene for solute carrier family 24
             (sodium/potassium/calcium exchanger) member 3 and a novel
             gene, complete sequence
          Length = 164845

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   tatgtaaacaaacaggatga 164
             ||||||||||||||||||||
Sbjct: 59582 tatgtaaacaaacaggatga 59601
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 458    gcggaggccaagctgctgca 477
              ||||||||||||||||||||
Sbjct: 670036 gcggaggccaagctgctgca 670055
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>emb|BX323998.7| Zebrafish DNA sequence from clone DKEYP-2C6 in linkage group 14,
             complete sequence
          Length = 172349

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    acttatctggggtaaaacaa 69
             ||||||||||||||||||||
Sbjct: 31281 acttatctggggtaaaacaa 31262
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>gb|AF507046.1| Meiothermus ruber dnaK operon, complete sequence
          Length = 4664

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 433  cgggctgggccaggaggcgg 452
            ||||||||||||||||||||
Sbjct: 4207 cgggctgggccaggaggcgg 4188
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>gb|AC159187.2| Mus musculus BAC clone RP24-226L7 from chromosome 17, complete sequence
          Length = 188360

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 163    gatagaaggaaaggagaggatggaaggg 190
              ||||||||||| |||||||| |||||||
Sbjct: 176348 gatagaaggaagggagaggagggaaggg 176321
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>gb|AF538231.1| Euphorbia myrsinites NADH dehydrogenase subunit F (ndhF) gene,
            partial cds; chloroplast gene for chloroplast product
          Length = 1485

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  taaacaaacaggatgatagaagga 172
            |||| |||||||||||||||||||
Sbjct: 1318 taaataaacaggatgatagaagga 1295
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     cggccgccgccatgatgccg 260
               ||||||||||||||||||||
Sbjct: 1117480 cggccgccgccatgatgccg 1117461
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>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete
             cds
          Length = 160480

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   ggccaggaggcggtcgaagc 459
             ||||||||||||||||||||
Sbjct: 59343 ggccaggaggcggtcgaagc 59324
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>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf
             copia_LTR and Huck gypsy_LTR retrotransposons, complete
             sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR
             and Opie1 copia_LTR retrotransposons, complete sequence;
             Ji copia_LTR retrotransposon, complete sequence; and
             unknown protein (adh1B), cyclin H-1 (adh1C), unknown
             protein (adh1D), hypothetical protein (adh1E), and unknown
             protein (adh1F) genes, complete cds
          Length = 126039

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   ggccaggaggcggtcgaagc 459
             ||||||||||||||||||||
Sbjct: 36567 ggccaggaggcggtcgaagc 36548


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,204,503
Number of Sequences: 3902068
Number of extensions: 4204503
Number of successful extensions: 91103
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90699
Number of HSP's gapped (non-prelim): 394
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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