ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111770.1| Zea mays CL63033_1 mRNA sequence 174 2e-40
2gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
5ref|NM_113582.2| Arabidopsis thaliana unknown protein AT3G26710 ... 68 3e-08
6emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence 68 3e-08
7gb|AY140025.1| Arabidopsis thaliana expressed protein (At3g26710... 68 3e-08
8gb|BT006294.1| Arabidopsis thaliana At3g26710 mRNA, complete cds 68 3e-08
9gb|AY087129.1| Arabidopsis thaliana clone 32010 mRNA, complete s... 68 3e-08
10dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 68 3e-08
11ref|NM_125885.2| Arabidopsis thaliana unknown protein AT5G64870 ... 44 0.44
12emb|BX830484.1|CNS0A1EH Arabidopsis thaliana Full-length cDNA Co... 44 0.44
13emb|BX830969.1|CNS0A0PW Arabidopsis thaliana Full-length cDNA Co... 44 0.44
14gb|AY085257.1| Arabidopsis thaliana clone 142026 mRNA, complete ... 44 0.44
15dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.44
16emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chr... 44 0.44
17ref|XM_750455.1| Aspergillus fumigatus Af293 papillary renal cel... 42 1.7
18gb|AC119810.8| Mus musculus chromosome 7, clone RP23-54G21, comp... 42 1.7
19gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete s... 42 1.7
20gb|AF031651.1|AF031651 Mus musculus VAV (vav) gene, promoter and... 42 1.7
21emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on ch... 42 1.7
22gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 40 6.9
23gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 40 6.9
24gb|AC112925.8| Mus musculus chromosome 5, clone RP23-136I18, com... 40 6.9
25gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, com... 40 6.9
26ref|XM_324076.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(... 40 6.9
27ref|XM_955262.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(... 40 6.9
28gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete s... 40 6.9
29gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, compl... 40 6.9
30gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, com... 40 6.9
31emb|CR728642.1|CNS0GP60 Tetraodon nigroviridis full-length cDNA 40 6.9
32emb|CR725398.2|CNS0GMNW Tetraodon nigroviridis full-length cDNA 40 6.9
33gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, comple... 40 6.9
34gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, co... 40 6.9
35gb|AC116036.3| Homo sapiens chromosome 3 clone RP11-359I18, comp... 40 6.9
36dbj|AK124775.1| Homo sapiens cDNA FLJ42785 fis, clone BRAWH3006548 40 6.9
37gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, comple... 40 6.9
38emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in ... 40 6.9
39gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, comp... 40 6.9
40gb|BC091721.1| Xenopus laevis cDNA clone IMAGE:4173501 40 6.9
41emb|AL158801.4|CNS01RGN Human chromosome 14 DNA sequence BAC R-6... 40 6.9
42emb|BX537600.1|HSM806302 Homo sapiens mRNA; cDNA DKFZp686O16145 ... 40 6.9
43emb|AL137938.1|HSM802129 Homo sapiens mRNA; cDNA DKFZp761M0223 (... 40 6.9
44gb|L07391.1|NEUNIT6X Neurospora crassa nitrite reductase (nit-6)... 40 6.9 
>gb|AY111770.1| Zea mays CL63033_1 mRNA sequence
          Length = 540

 Score =  174 bits (88), Expect = 2e-40
 Identities = 180/210 (85%), Gaps = 3/210 (1%)
 Strand = Plus / Minus

                                                                       
Query: 192 tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 251
           ||||||||| || || |||||||| || | ||||||||||||||| | |||||| ||| |
Sbjct: 241 tcatgtctcaaagatgcccttcacatagaccatccccttctcgctgaacttgaggtcctt 182

                                                                       
Query: 252 cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 311
           |||||||||||| ||||| || || |||||| |||| || |||||||||||   ||||||
Sbjct: 181 cctcatctgctcaacctggacgtcatcgccctgcacaaggatctcggacac---gttccc 125

                                                                       
Query: 312 gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 371
           ||||||||| | || |||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 124 gtcatcggataggatcatcttgaccttgatctcttctttccttgacgctttcgtccagta 65

                                         
Query: 372 gtacactcccgccaaggggcttaaggtcat 401
           |||| |||||||||||||||| | ||||||
Sbjct: 64  gtacgctcccgccaaggggctcagggtcat 35
to top
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0078F08, complete sequence
          Length = 165440

 Score =  113 bits (57), Expect = 6e-22
 Identities = 152/183 (83%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 251
            |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| |
Sbjct: 8460 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 8401

                                                                        
Query: 252  cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 311
            |||||||||||| || || ||||| || |||||||| ||||| ||||| |||   |||||
Sbjct: 8400 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 8344

                                                                        
Query: 312  gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 371
            |||||| || || | ||| || ||||||||||| ||||| || || || |||||||||||
Sbjct: 8343 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 8284

               
Query: 372  gta 374
            |||
Sbjct: 8283 gta 8281



 Score =  113 bits (57), Expect = 6e-22
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                        
Query: 381  cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 440
            |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct: 8190 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 8131

                                                            
Query: 441  tgacagancaagcccgacgctccccaggctaatgacggtgcagaaggt 488
            ||| ||| |||| |||||||| || |||||||||  ||||||||||||
Sbjct: 8130 tgatagaacaagaccgacgctgccaaggctaatgcaggtgcagaaggt 8083



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 53   aagccaagacacagatttgcccgt 76
            ||||||||| ||||||||||||||
Sbjct: 8581 aagccaagatacagatttgcccgt 8558
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  113 bits (57), Expect = 6e-22
 Identities = 152/183 (83%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                            
Query: 192      tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 251
                |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| |
Sbjct: 18429145 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 18429086

                                                                            
Query: 252      cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 311
                |||||||||||| || || ||||| || |||||||| ||||| ||||| |||   |||||
Sbjct: 18429085 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 18429029

                                                                            
Query: 312      gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 371
                |||||| || || | ||| || ||||||||||| ||||| || || || |||||||||||
Sbjct: 18429028 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 18428969

                   
Query: 372      gta 374
                |||
Sbjct: 18428968 gta 18428966



 Score =  113 bits (57), Expect = 6e-22
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                            
Query: 381      cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 440
                |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct: 18428875 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 18428816

                                                                
Query: 441      tgacagancaagcccgacgctccccaggctaatgacggtgcagaaggt 488
                ||| ||| |||| |||||||| || |||||||||  ||||||||||||
Sbjct: 18428815 tgatagaacaagaccgacgctgccaaggctaatgcaggtgcagaaggt 18428768



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 53       aagccaagacacagatttgcccgt 76
                ||||||||| ||||||||||||||
Sbjct: 18429266 aagccaagatacagatttgcccgt 18429243
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  113 bits (57), Expect = 6e-22
 Identities = 152/183 (83%), Gaps = 3/183 (1%)
 Strand = Plus / Minus

                                                                            
Query: 192      tcatgtctcgaatatccccttcacgtatatcatccccttctcgctcatcttgagctccct 251
                |||||| || || |||||||| || ||||||||||||||||| || | |||||||||| |
Sbjct: 18588546 tcatgtttcaaagatccccttaacatatatcatccccttctcactgaacttgagctcctt 18588487

                                                                            
Query: 252      cctcatctgctcgacctgcacatcgtcgccccgcaccagaatctcggacacattgttccc 311
                |||||||||||| || || ||||| || |||||||| ||||| ||||| |||   |||||
Sbjct: 18588486 cctcatctgctccacttggacatcatcaccccgcacaagaatttcggataca---ttccc 18588430

                                                                            
Query: 312      gtcatcggacaagaccatcttcaccttgatctcctctttcctcgacgcttttgtccagta 371
                |||||| || || | ||| || ||||||||||| ||||| || || || |||||||||||
Sbjct: 18588429 gtcatccgataaaatcattttgaccttgatctcttcttttcttgatgcctttgtccagta 18588370

                   
Query: 372      gta 374
                |||
Sbjct: 18588369 gta 18588367



 Score =  113 bits (57), Expect = 6e-22
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                            
Query: 381      cgccaaggggcttaaggtcataagccagaaccagttgttgccgccttctgggaccgcgat 440
                |||||| ||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct: 18588276 cgccaatgggcttaaggtcataagccagaaccagttgttgccaccctccgggactgcaat 18588217

                                                                
Query: 441      tgacagancaagcccgacgctccccaggctaatgacggtgcagaaggt 488
                ||| ||| |||| |||||||| || |||||||||  ||||||||||||
Sbjct: 18588216 tgatagaacaagaccgacgctgccaaggctaatgcaggtgcagaaggt 18588169



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 53       aagccaagacacagatttgcccgt 76
                ||||||||| ||||||||||||||
Sbjct: 18588667 aagccaagatacagatttgcccgt 18588644
to top
>ref|NM_113582.2| Arabidopsis thaliana unknown protein AT3G26710 mRNA, complete cds
          Length = 972

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 327 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 380
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 690 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 637
to top
>emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence
          Length = 81493

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 327   catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 380
             ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 66654 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 66601
to top
>gb|AY140025.1| Arabidopsis thaliana expressed protein (At3g26710) mRNA, complete
           cds
          Length = 908

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 327 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 380
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 691 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 638
to top
>gb|BT006294.1| Arabidopsis thaliana At3g26710 mRNA, complete cds
          Length = 804

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 327 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 380
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 666 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 613
to top
>gb|AY087129.1| Arabidopsis thaliana clone 32010 mRNA, complete sequence
          Length = 918

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                 
Query: 327 catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 380
           ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 685 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 632
to top
>dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15
          Length = 43481

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 327   catcttcaccttgatctcctctttcctcgacgcttttgtccagtagtacactcc 380
             ||||||||| || |||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 24416 catcttcacttttatctcctctttcctcgacgcctttttccagtaatacactcc 24363
to top
>ref|NM_125885.2| Arabidopsis thaliana unknown protein AT5G64870 mRNA, complete cds
          Length = 1754

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 329 tcttcaccttgatctcctcttt 350
           ||||||||||||||||||||||
Sbjct: 764 tcttcaccttgatctcctcttt 743
to top
>emb|BX830484.1|CNS0A1EH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB84ZF09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1586

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 329 tcttcaccttgatctcctcttt 350
           ||||||||||||||||||||||
Sbjct: 742 tcttcaccttgatctcctcttt 721
to top
>emb|BX830969.1|CNS0A0PW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS43ZD06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1673

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 329 tcttcaccttgatctcctcttt 350
           ||||||||||||||||||||||
Sbjct: 742 tcttcaccttgatctcctcttt 721
to top
>gb|AY085257.1| Arabidopsis thaliana clone 142026 mRNA, complete sequence
          Length = 1753

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 329 tcttcaccttgatctcctcttt 350
           ||||||||||||||||||||||
Sbjct: 764 tcttcaccttgatctcctcttt 743
to top
>dbj|AB019236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXK3
          Length = 81494

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 329   tcttcaccttgatctcctcttt 350
             ||||||||||||||||||||||
Sbjct: 27863 tcttcaccttgatctcctcttt 27884
to top
>emb|AL845466.4| Mouse DNA sequence from clone RP23-433P19 on chromosome 2, complete
              sequence
          Length = 197839

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 48     tctcaaagccaagacacagatt 69
              ||||||||||||||||||||||
Sbjct: 187714 tctcaaagccaagacacagatt 187693
to top
>ref|XM_750455.1| Aspergillus fumigatus Af293 papillary renal cell
           carcinoma-associated protein (Afu2g12160) partial mRNA
          Length = 1239

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 cttcaccttgatctcctctttcctc 354
           ||||| |||||||||||||||||||
Sbjct: 564 cttcaacttgatctcctctttcctc 540
to top
>gb|AC119810.8| Mus musculus chromosome 7, clone RP23-54G21, complete sequence
          Length = 185939

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   cgaatatccccttcacgtata 220
             |||||||||||||||||||||
Sbjct: 40474 cgaatatccccttcacgtata 40494
to top
>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence
          Length = 120889

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    aaaaacatctctttttctcaa 53
             |||||||||||||||||||||
Sbjct: 23995 aaaaacatctctttttctcaa 23975
to top
>gb|AF031651.1|AF031651 Mus musculus VAV (vav) gene, promoter and partial cds
          Length = 1000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  acccaccctcaactcccctct 107
           |||||||||||||||||||||
Sbjct: 23  acccaccctcaactcccctct 43
to top
>emb|CT025692.15| Mouse DNA sequence from clone RP23-312G18 on chromosome 17, complete
              sequence
          Length = 177741

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     acccaccctcaactcccctct 107
              |||||||||||||||||||||
Sbjct: 161446 acccaccctcaactcccctct 161466
to top
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 135    aaagcctggtttgaactgcttgct 158
              ||||||| ||||||||||||||||
Sbjct: 710689 aaagccttgtttgaactgcttgct 710666
to top
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 135    aaagcctggtttgaactgcttgct 158
              ||||||| ||||||||||||||||
Sbjct: 710473 aaagccttgtttgaactgcttgct 710450
to top
>gb|AC112925.8| Mus musculus chromosome 5, clone RP23-136I18, complete sequence
          Length = 195433

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    tcaccttgatctcctctttc 351
              ||||||||||||||||||||
Sbjct: 123923 tcaccttgatctcctctttc 123942
to top
>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence
          Length = 154765

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   tcaccttgatctcctctttc 351
             ||||||||||||||||||||
Sbjct: 49316 tcaccttgatctcctctttc 49335
to top
>ref|XM_324076.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1)
            partial mRNA
          Length = 3531

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 233  cgctcatcttgagctccctcctca 256
            ||||| ||||||||||||||||||
Sbjct: 1231 cgctcttcttgagctccctcctca 1208
to top
>ref|XM_955262.1| Neurospora crassa OR74A NITRITE REDUCTASE [NAD(P)H] (NCU04720.1)
            partial mRNA
          Length = 3531

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 233  cgctcatcttgagctccctcctca 256
            ||||| ||||||||||||||||||
Sbjct: 1231 cgctcttcttgagctccctcctca 1208
to top
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
          Length = 143392

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    accttgatctcctctttcct 353
              ||||||||||||||||||||
Sbjct: 125193 accttgatctcctctttcct 125174
to top
>gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, complete sequence
          Length = 185364

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 210    cttcacgtatatcatccccttctc 233
              ||||| ||||||||||||||||||
Sbjct: 137669 cttcaagtatatcatccccttctc 137692
to top
>gb|AC163273.4| Mus musculus chromosome 5, clone RP24-396E18, complete sequence
          Length = 136964

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    tcaccttgatctcctctttc 351
              ||||||||||||||||||||
Sbjct: 133057 tcaccttgatctcctctttc 133076
to top
>emb|CR728642.1|CNS0GP60 Tetraodon nigroviridis full-length cDNA
          Length = 1943

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 474  gacggtgcagaaggtcagca 493
            ||||||||||||||||||||
Sbjct: 1264 gacggtgcagaaggtcagca 1283
to top
>emb|CR725398.2|CNS0GMNW Tetraodon nigroviridis full-length cDNA
          Length = 1942

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 474  gacggtgcagaaggtcagca 493
            ||||||||||||||||||||
Sbjct: 1262 gacggtgcagaaggtcagca 1281
to top
>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence
          Length = 108182

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 210   cttcacgtatatcatccccttctc 233
             ||||| ||||||||||||||||||
Sbjct: 78131 cttcaagtatatcatccccttctc 78154
to top
>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence
          Length = 151045

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   accagaatctcggacacatt 305
             ||||||||||||||||||||
Sbjct: 90041 accagaatctcggacacatt 90022
to top
>gb|AC116036.3| Homo sapiens chromosome 3 clone RP11-359I18, complete sequence
          Length = 178119

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    tactgaaacccaccctcaactccc 103
             ||||||| ||||||||||||||||
Sbjct: 35493 tactgaaccccaccctcaactccc 35516
to top
>dbj|AK124775.1| Homo sapiens cDNA FLJ42785 fis, clone BRAWH3006548
          Length = 3842

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 80   tactgaaacccaccctcaactccc 103
            ||||||| ||||||||||||||||
Sbjct: 1675 tactgaaccccaccctcaactccc 1698
to top
>gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, complete sequence
          Length = 59463

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 91    accctcaactcccctctcaccttc 114
             |||||||||||||||| |||||||
Sbjct: 56705 accctcaactcccctcccaccttc 56682
to top
>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5,
             complete sequence
          Length = 197352

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   gggcttaaggtcataagcca 407
             ||||||||||||||||||||
Sbjct: 18321 gggcttaaggtcataagcca 18302
to top
>gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, complete sequence
          Length = 171175

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     tactgaaacccaccctcaactccc 103
              ||||||| ||||||||||||||||
Sbjct: 123851 tactgaaccccaccctcaactccc 123874
to top
>gb|BC091721.1| Xenopus laevis cDNA clone IMAGE:4173501
          Length = 2895

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 327  catcttcaccttgatctcct 346
            ||||||||||||||||||||
Sbjct: 2695 catcttcaccttgatctcct 2676
to top
>emb|AL158801.4|CNS01RGN Human chromosome 14 DNA sequence BAC R-665C16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 205860

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tctctttttctcaaagccaa 59
             ||||||||||||||||||||
Sbjct: 69634 tctctttttctcaaagccaa 69653
to top
>emb|BX537600.1|HSM806302 Homo sapiens mRNA; cDNA DKFZp686O16145 (from clone DKFZp686O16145)
          Length = 4237

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 80  tactgaaacccaccctcaactccc 103
           ||||||| ||||||||||||||||
Sbjct: 789 tactgaaccccaccctcaactccc 812
to top
>emb|AL137938.1|HSM802129 Homo sapiens mRNA; cDNA DKFZp761M0223 (from clone DKFZp761M0223)
          Length = 3764

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 80  tactgaaacccaccctcaactccc 103
           ||||||| ||||||||||||||||
Sbjct: 213 tactgaaccccaccctcaactccc 236
to top
>gb|L07391.1|NEUNIT6X Neurospora crassa nitrite reductase (nit-6) gene, exons 1-4
          Length = 4800

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 233  cgctcatcttgagctccctcctca 256
            ||||| ||||||||||||||||||
Sbjct: 2184 cgctcttcttgagctccctcctca 2161


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,713,158
Number of Sequences: 3902068
Number of extensions: 3713158
Number of successful extensions: 65038
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64881
Number of HSP's gapped (non-prelim): 153
length of query: 506
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 484
effective length of database: 17,147,199,772
effective search space: 8299244689648
effective search space used: 8299244689648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top