ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11b19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187782.1| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
2ref|XM_507360.1| PREDICTED Oryza sativa (japonica cultivar-group... 105 1e-19
3ref|XM_506281.2| PREDICTED Oryza sativa (japonica cultivar-group... 105 1e-19
4emb|AJ251298.1|OSA251298 Oryza sativa mRNA for spermidine syntha... 105 1e-19
5dbj|AK099606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
6dbj|AK060916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
7gb|BT024141.1| Zea mays clone EL01N0442H12 mRNA sequence 90 6e-15
8gb|AY103592.1| Zea mays PCO075678 mRNA sequence 90 6e-15
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
10dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
11emb|Y08252.1|DSSS1 D.stramonium mRNA for spermidine synthase 1 54 4e-04
12gb|AY646352.1| Cucumis sativus spermidine synthase mRNA, complet... 52 0.001
13dbj|AB006691.1| Hyoscyamus niger mRNA for spermidine synthase 2,... 50 0.006
14dbj|AB015599.1| Coffea arabica mRNA for spermidine synthase, com... 46 0.087
15ref|NM_203110.1| Arabidopsis thaliana unknown protein AT5G26760 ... 44 0.34
16ref|NM_122558.3| Arabidopsis thaliana unknown protein AT5G26760 ... 44 0.34
17gb|BT015786.1| Arabidopsis thaliana At5g26760 mRNA, complete cds 44 0.34
18gb|AY090972.1| Arabidopsis thaliana At5g26760 mRNA sequence 44 0.34
19emb|AJ000732.1|ATAJ732 Arabidopsis thaliana ASKalpha gene 44 0.34
20emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chr... 44 0.34
21gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq... 44 0.34
22emb|AJ345003.1|STU345003 Solanum tuberosum mRNA for spermidine s... 42 1.4
23emb|AJ006414.1|LES6414 Lycopersicon esculentum mRNA for spermidi... 42 1.4
24gb|AY705439.1| Silene latifolia spermidine synthase Y mRNA, part... 42 1.4
25gb|AY705438.1| Silene latifolia spermidine synthase Y gene, part... 42 1.4
26dbj|AB006692.1| Nicotiana sylvestris mRNA for spermidine synthas... 42 1.4
27dbj|AB006690.1| Hyoscyamus niger mRNA for spermidine synthase 1,... 42 1.4
28gb|AF030001.1|MMMHC29N7 Mus musculus major histocompatibility lo... 40 5.3
29emb|CT009767.6| Mouse DNA sequence from clone RP23-24A13 on chro... 40 5.3
30gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosom... 40 5.3
31gb|AC079113.4| Homo sapiens BAC clone RP11-81E15 from 7, complet... 40 5.3
32gb|AC099759.4| Homo sapiens BAC clone RP11-233O19 from 7, comple... 40 5.3
33gb|AC005061.2| Homo sapiens BAC clone CTB-87E15 from 7, complete... 40 5.3
34emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chr... 40 5.3
35gb|AC018552.6| Homo sapiens chromosome 16 clone RP11-405F3, comp... 40 5.3
36emb|BX072555.14| Zebrafish DNA sequence from clone DKEY-30O19 in... 40 5.3
37gb|AY705437.1| Silene latifolia spermidine synthase X gene, part... 40 5.3
38gb|AY705436.1| Silene vulgaris spermidine synthase gene, partial... 40 5.3
39gb|AC006289.1|AC006289 Mus musculus chromosome 17, clone 29_N_7,... 40 5.3
40gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 40 5.3
41gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, comple... 40 5.3
42gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Canc... 40 5.3 
>ref|NM_187782.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 963

 Score =  105 bits (53), Expect = 1e-19
 Identities = 138/167 (82%)
 Strand = Plus / Minus

                                                                       
Query: 214 atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtan 273
           ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||| 
Sbjct: 944 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 885

                                                                       
Query: 274 aacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanacagga 333
           ||||| || || || || |||||||||||| | || | |||||| ||| | || | ||||
Sbjct: 884 aacttaagtggtcctttcgattttgttgagaactcattatcctcaatgttaaaaatagga 825

                                                          
Query: 334 tgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
           ||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 824 tgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 778
to top
>ref|XM_507360.1| PREDICTED Oryza sativa (japonica cultivar-group), P0492E07.108 mRNA
          Length = 1297

 Score =  105 bits (53), Expect = 1e-19
 Identities = 138/167 (82%)
 Strand = Plus / Minus

                                                                        
Query: 214  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtan 273
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||| 
Sbjct: 1089 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1030

                                                                        
Query: 274  aacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanacagga 333
            ||||| || || || || |||||||||||| | || | |||||| ||| | || | ||||
Sbjct: 1029 aacttaagtggtcctttcgattttgttgagaactcattatcctcaatgttaaaaatagga 970

                                                           
Query: 334  tgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
            ||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 969  tgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 923
to top
>ref|XM_506281.2| PREDICTED Oryza sativa (japonica cultivar-group), P0492E07.108 mRNA
          Length = 1346

 Score =  105 bits (53), Expect = 1e-19
 Identities = 138/167 (82%)
 Strand = Plus / Minus

                                                                        
Query: 214  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtan 273
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||| 
Sbjct: 1090 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1031

                                                                        
Query: 274  aacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanacagga 333
            ||||| || || || || |||||||||||| | || | |||||| ||| | || | ||||
Sbjct: 1030 aacttaagtggtcctttcgattttgttgagaactcattatcctcaatgttaaaaatagga 971

                                                           
Query: 334  tgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
            ||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 970  tgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 924
to top
>emb|AJ251298.1|OSA251298 Oryza sativa mRNA for spermidine synthase 1 (spdSyn1 gene)
          Length = 1308

 Score =  105 bits (53), Expect = 1e-19
 Identities = 138/167 (82%)
 Strand = Plus / Minus

                                                                        
Query: 214  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtan 273
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||| 
Sbjct: 1052 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 993

                                                                        
Query: 274  aacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanacagga 333
            ||||| || || || || |||||||||||| | || | |||||| ||| | || | ||||
Sbjct: 992  aacttaagtggtcctttcgattttgttgagaactcattatcctcaatgttaaaaatagga 933

                                                           
Query: 334  tgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
            ||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 932  tgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 886
to top
>dbj|AK099606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048E04, full
            insert sequence
          Length = 1346

 Score =  105 bits (53), Expect = 1e-19
 Identities = 138/167 (82%)
 Strand = Plus / Minus

                                                                        
Query: 214  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtan 273
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||| 
Sbjct: 1090 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1031

                                                                        
Query: 274  aacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanacagga 333
            ||||| || || || || |||||||||||| | || | |||||| ||| | || | ||||
Sbjct: 1030 aacttaagtggtcctttcgattttgttgagaactcattatcctcaatgttaaaaatagga 971

                                                           
Query: 334  tgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
            ||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 970  tgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 924
to top
>dbj|AK060916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G07, full
            insert sequence
          Length = 1297

 Score =  105 bits (53), Expect = 1e-19
 Identities = 138/167 (82%)
 Strand = Plus / Minus

                                                                        
Query: 214  atgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtan 273
            ||||| ||| |||| || || ||||||||||| ||||| | ||||| |||||| ||||| 
Sbjct: 1089 atgactctcttcgcaaaagacggcaaacaaaatgatgctgagtggatctcggaattgtag 1030

                                                                        
Query: 274  aacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanacagga 333
            ||||| || || || || |||||||||||| | || | |||||| ||| | || | ||||
Sbjct: 1029 aacttaagtggtcctttcgattttgttgagaactcattatcctcaatgttaaaaatagga 970

                                                           
Query: 334  tgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
            ||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 969  tgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 923
to top
>gb|BT024141.1| Zea mays clone EL01N0442H12 mRNA sequence
          Length = 1281

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 154/191 (80%)
 Strand = Plus / Minus

                                                                       
Query: 210 ctcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagtt 269
           |||||| |||||| | || || || |||||||| || ||||| ||||||| ||| |||||
Sbjct: 985 ctcgattaccctctttgcaaaagaaggcaaacagaatgatgccgtgtggatctccgagtt 926

                                                                       
Query: 270 gtanaacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanac 329
           ||| ||||| || || || || |||||  | |  | ||| || ||||||||| |||| ||
Sbjct: 925 gtagaacttaaggggtccttttgatttcataggatgttcatcctcctcgatgttgaaaac 866

                                                                       
Query: 330 aggatgctggaaatcaacactaggcccctccgtggagcagagcatgaaacctatcactcc 389
           ||| |||||||||||||||  |||||| || |||||||| |||||||| || || |||||
Sbjct: 865 agggtgctggaaatcaacagcaggcccttcggtggagcaaagcatgaacccaataactcc 806

                      
Query: 390 gcttgggtatg 400
           ||| |||||||
Sbjct: 805 gctagggtatg 795
to top
>gb|AY103592.1| Zea mays PCO075678 mRNA sequence
          Length = 1471

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 154/191 (80%)
 Strand = Plus / Minus

                                                                        
Query: 210  ctcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagtt 269
            |||||| |||||| | || || || |||||||| || ||||| ||||||| ||| |||||
Sbjct: 1044 ctcgattaccctctttgcaaaagaaggcaaacagaatgatgccgtgtggatctccgagtt 985

                                                                        
Query: 270  gtanaacttgagcggccccttggattttgttgagtattcgtcatcctcgatgctgaanac 329
            ||| ||||| || || ||||| |||||  | |  |  || || ||||||||| |||| ||
Sbjct: 984  gtagaacttaaggggtccctttgatttcataggatgctcatcctcctcgatgttgaaaac 925

                                                                        
Query: 330  aggatgctggaaatcaacactaggcccctccgtggagcagagcatgaaacctatcactcc 389
            ||| |||||||||||||||  |||||| || |||||||| |||||||| || || |||||
Sbjct: 924  agggtgctggaaatcaacagcaggcccttcggtggagcaaagcatgaacccaataactcc 865

                       
Query: 390  gcttgggtatg 400
            ||| |||||||
Sbjct: 864  gctagggtatg 854
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 100/120 (83%)
 Strand = Plus / Plus

                                                                            
Query: 261      ctcggagttgtanaacttgagcggccccttggattttgttgagtattcgtcatcctcgat 320
                |||||| ||||| ||||| || || || || |||||||||||| | || | |||||| ||
Sbjct: 12663437 ctcggaattgtagaacttaagtggtcctttcgattttgttgagaactcattatcctcaat 12663496

                                                                            
Query: 321      gctgaanacaggatgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
                | | || | ||||||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 12663497 gttaaaaataggatgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 12663556
to top
>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0492E07
          Length = 143794

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 100/120 (83%)
 Strand = Plus / Plus

                                                                         
Query: 261   ctcggagttgtanaacttgagcggccccttggattttgttgagtattcgtcatcctcgat 320
             |||||| ||||| ||||| || || || || |||||||||||| | || | |||||| ||
Sbjct: 37907 ctcggaattgtagaacttaagtggtcctttcgattttgttgagaactcattatcctcaat 37966

                                                                         
Query: 321   gctgaanacaggatgctggaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
             | | || | ||||||||||||||||||| |||||||||| |||||||| ||||| |||||
Sbjct: 37967 gttaaaaataggatgctggaaatcaacagtaggcccctcggtggagcaaagcataaaacc 38026
to top
>emb|Y08252.1|DSSS1 D.stramonium mRNA for spermidine synthase 1
          Length = 1190

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 217 accctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttgtanaac 276
           |||||| |||| || ||||||||||| |||||||||| ||| | ||| |||||||| |||
Sbjct: 941 accctcttcgcaaaagatggcaaacagaacgatgcagagtgaatctcagagttgtagaac 882

             
Query: 277 tt 278
           ||
Sbjct: 881 tt 880
to top
>gb|AY646352.1| Cucumis sativus spermidine synthase mRNA, complete cds
          Length = 1398

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                       
Query: 331 ggatgctggaaatcaacactaggcccctccgtggagcagagcatgaaacctatcactccg 390
           ||||||| |||||| ||| |||| ||||| || ||||||||||| || || |||||||||
Sbjct: 901 ggatgcttgaaatcgacagtaggtccctcagttgagcagagcataaacccaatcactccg 842

             
Query: 391 ct 392
           ||
Sbjct: 841 ct 840
to top
>dbj|AB006691.1| Hyoscyamus niger mRNA for spermidine synthase 2, complete cds
          Length = 1263

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                       
Query: 211 tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgcagtgtggaactcggagttg 270
           ||||| |||||| | || || ||||||||||| |||||||||| ||| | ||| ||||||
Sbjct: 994 tcgatcaccctcttagcaaaagatggcaaacagaacgatgcagagtgaatctcagagttg 935

                   
Query: 271 tanaactt 278
           || |||||
Sbjct: 934 tagaactt 927



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 339 gaaatcaacactaggcccctccgtggagcagagcatgaaacc 380
           ||||||||||  ||| ||||| || |||||||||||||||||
Sbjct: 866 gaaatcaacagcaggtccctcagtcgagcagagcatgaaacc 825
to top
>dbj|AB015599.1| Coffea arabica mRNA for spermidine synthase, complete cds
          Length = 1383

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 352 ggcccctccgtggagcagagcatgaaacctatcactccgcttgggta 398
           |||||||| || || |||||||||||||| || ||||| ||||||||
Sbjct: 828 ggcccctcagtagaacagagcatgaaaccaattactccacttgggta 782
to top
>ref|NM_203110.1| Arabidopsis thaliana unknown protein AT5G26760 transcript variant
            AT5G26760.2 mRNA, complete cds
          Length = 2528

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tcaccatcttcataagaattag 198
            ||||||||||||||||||||||
Sbjct: 1300 tcaccatcttcataagaattag 1279
to top
>ref|NM_122558.3| Arabidopsis thaliana unknown protein AT5G26760 transcript variant
            AT5G26760.1 mRNA, complete cds
          Length = 2820

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tcaccatcttcataagaattag 198
            ||||||||||||||||||||||
Sbjct: 1510 tcaccatcttcataagaattag 1489
to top
>gb|BT015786.1| Arabidopsis thaliana At5g26760 mRNA, complete cds
          Length = 1293

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 177 tcaccatcttcataagaattag 198
           ||||||||||||||||||||||
Sbjct: 254 tcaccatcttcataagaattag 233
to top
>gb|AY090972.1| Arabidopsis thaliana At5g26760 mRNA sequence
          Length = 2755

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tcaccatcttcataagaattag 198
            ||||||||||||||||||||||
Sbjct: 1510 tcaccatcttcataagaattag 1489
to top
>emb|AJ000732.1|ATAJ732 Arabidopsis thaliana ASKalpha gene
          Length = 8645

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 177  tcaccatcttcataagaattag 198
            ||||||||||||||||||||||
Sbjct: 1819 tcaccatcttcataagaattag 1798
to top
>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete
             sequence
          Length = 203000

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 129   ccctgtgtcagaaaccaaagca 150
             ||||||||||||||||||||||
Sbjct: 56904 ccctgtgtcagaaaccaaagca 56883
to top
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 177  tcaccatcttcataagaattag 198
            ||||||||||||||||||||||
Sbjct: 6885 tcaccatcttcataagaattag 6906
to top
>emb|AJ345003.1|STU345003 Solanum tuberosum mRNA for spermidine synthase (SpdSy gene)
          Length = 1347

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 211  tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgc 251
            ||||| |||||| | ||||||||||||||||| || |||||
Sbjct: 1151 tcgatcaccctcttggcgaatgatggcaaacagaatgatgc 1111
to top
>emb|AJ006414.1|LES6414 Lycopersicon esculentum mRNA for spermidine synthase
          Length = 1269

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 211  tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgc 251
            ||||| |||||| | ||||||||||||||||| || |||||
Sbjct: 1112 tcgatcaccctcttggcgaatgatggcaaacagaatgatgc 1072
to top
>gb|AY705439.1| Silene latifolia spermidine synthase Y mRNA, partial cds
          Length = 700

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 217 accctcctcgcgaatgatggcaaacaaaa 245
           |||||| | ||||||||||||||||||||
Sbjct: 508 accctctttgcgaatgatggcaaacaaaa 480



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 217 accctcctcgcgaatgatggcaaacaaaa 245
           |||||| | ||||||||||||||||||||
Sbjct: 426 accctctttgcgaatgatggcaaacaaaa 398
to top
>gb|AY705438.1| Silene latifolia spermidine synthase Y gene, partial cds
          Length = 4133

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 217  accctcctcgcgaatgatggcaaacaaaa 245
            |||||| | ||||||||||||||||||||
Sbjct: 4105 accctctttgcgaatgatggcaaacaaaa 4077
to top
>dbj|AB006692.1| Nicotiana sylvestris mRNA for spermidine synthase, complete cds
          Length = 1168

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 355 ccctccgtggagcagagcatgaaacctatcactccgcttgg 395
           ||||| || ||||||||||||||||| ||||  ||||||||
Sbjct: 809 ccctcggtagagcagagcatgaaaccaatcataccgcttgg 769
to top
>dbj|AB006690.1| Hyoscyamus niger mRNA for spermidine synthase 1, complete cds
          Length = 1213

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 211 tcgatgaccctcctcgcgaatgatggcaaacaaaacgatgc 251
           ||||| |||||| | || |||||||||||||| ||||||||
Sbjct: 984 tcgatcaccctcttggcaaatgatggcaaacagaacgatgc 944
to top
>gb|AF030001.1|MMMHC29N7 Mus musculus major histocompatibility locus class III
              region:butyrophilin-like protein gene, partial cds; Notch4,
              PBX2, RAGE, lysophatidic acid acyl transferase-alpha,
              palmitoyl-protein thioesterase 2 (PPT2), CREB-RP, and
              tenascin X (TNX) genes, complete cds; and CYP21OHB
              pseudogene, complete sequence
          Length = 201964

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    taagacagatttctccctgt 134
              ||||||||||||||||||||
Sbjct: 111859 taagacagatttctccctgt 111878
to top
>emb|CT009767.6| Mouse DNA sequence from clone RP23-24A13 on chromosome 17, complete
              sequence
          Length = 221442

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    taagacagatttctccctgt 134
              ||||||||||||||||||||
Sbjct: 192917 taagacagatttctccctgt 192936
to top
>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence
          Length = 167927

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   ttcagtcaccatcttcataa 191
             ||||||||||||||||||||
Sbjct: 38875 ttcagtcaccatcttcataa 38894
to top
>gb|AC079113.4| Homo sapiens BAC clone RP11-81E15 from 7, complete sequence
          Length = 94669

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   tcttcataagaattagttag 202
             ||||||||||||||||||||
Sbjct: 63904 tcttcataagaattagttag 63885
to top
>gb|AC099759.4| Homo sapiens BAC clone RP11-233O19 from 7, complete sequence
          Length = 101955

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggaaataaaacctgagacat 20
             ||||||||||||||||||||
Sbjct: 37169 ggaaataaaacctgagacat 37188
to top
>gb|AC005061.2| Homo sapiens BAC clone CTB-87E15 from 7, complete sequence
          Length = 114828

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggaaataaaacctgagacat 20
             ||||||||||||||||||||
Sbjct: 19583 ggaaataaaacctgagacat 19602
to top
>emb|AL158835.11| Human DNA sequence from clone RP11-383C5 on chromosome 10 Contains a
              aldolase A, fructose-bisphosphate pseudogene 2, four novel
              genes, the gene for erythroid differentiation-related
              factor 1 (EDRF1), the 3' end of the MMP21 gene for matrix
              metalloproteinase 21 and one CpG island, complete sequence
          Length = 174530

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    agacagatttctccctgtgt 136
              ||||||||||||||||||||
Sbjct: 143603 agacagatttctccctgtgt 143622
to top
>gb|AC018552.6| Homo sapiens chromosome 16 clone RP11-405F3, complete sequence
          Length = 152156

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    gcccctccgtggagcagagc 372
              ||||||||||||||||||||
Sbjct: 102371 gcccctccgtggagcagagc 102390
to top
>emb|BX072555.14| Zebrafish DNA sequence from clone DKEY-30O19 in linkage group 22,
             complete sequence
          Length = 227616

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tgggcttattgcaagctaat 80
             ||||||||||||||||||||
Sbjct: 37817 tgggcttattgcaagctaat 37836
to top
>gb|AY705437.1| Silene latifolia spermidine synthase X gene, partial cds
          Length = 3711

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  gcgaatgatggcaaacaaaa 245
            ||||||||||||||||||||
Sbjct: 3674 gcgaatgatggcaaacaaaa 3655
to top
>gb|AY705436.1| Silene vulgaris spermidine synthase gene, partial cds
          Length = 3533

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  gcgaatgatggcaaacaaaa 245
            ||||||||||||||||||||
Sbjct: 3496 gcgaatgatggcaaacaaaa 3477
to top
>gb|AC006289.1|AC006289 Mus musculus chromosome 17, clone 29_N_7, complete sequence
          Length = 201986

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    taagacagatttctccctgt 134
              ||||||||||||||||||||
Sbjct: 111880 taagacagatttctccctgt 111899
to top
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    agtattcgtcatcctcgatg 321
              ||||||||||||||||||||
Sbjct: 406002 agtattcgtcatcctcgatg 406021
to top
>gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, complete sequence
          Length = 217902

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   ttcagtcaccatcttcataa 191
             ||||||||||||||||||||
Sbjct: 60048 ttcagtcaccatcttcataa 60029
to top
>gb|AC117439.5| Homo sapiens 3 BAC RP11-183P11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172676

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gccctggtttcagtcaccat 183
             ||||||||||||||||||||
Sbjct: 22463 gccctggtttcagtcaccat 22444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,209,337
Number of Sequences: 3902068
Number of extensions: 3209337
Number of successful extensions: 55571
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55494
Number of HSP's gapped (non-prelim): 77
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top