Clone Information

BLAST Search Result

Clone Name	rbasd11b15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	109	1e-20
2	dbj\|AP004731.3\| Oryza sativa (japonica cultivar-group) genomic D...	109	1e-20
3	gb\|AC149299.1\| Populus trichocarpa clone Pop1-037B22, complete s...	58	3e-05
4	dbj\|AP003686.3\| Oryza sativa (japonica cultivar-group) genomic D...	58	3e-05
5	dbj\|AK105176.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	3e-05
6	emb\|AJ862834.1\| Hordeum vulgare partial horv4 gene for pollen al...	52	0.002
7	gb\|AY451241.1\| Cynodon dactylon FAD-linked oxidoreductase BG60 m...	48	0.034
8	dbj\|AP004983.1\| Lotus japonicus genomic DNA, chromosome 6, clone...	48	0.034
9	dbj\|AK072611.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
10	emb\|AJ862832.1\| Triticum aestivum partial tria4 gene for pollen ...	44	0.52
11	emb\|AJ862831.1\| Secale cereale partial secc4 gene for pollen all...	44	0.52
12	emb\|AJ862830.1\| Secale cereale partial secc4 gene for pollen all...	44	0.52
13	gb\|AC097502.3\| Homo sapiens BAC clone RP11-340B18 from 4, comple...	42	2.1
14	emb\|AL121766.5\|CNS01DSA Human chromosome 14 DNA sequence BAC R-4...	42	2.1
15	ref\|NM_118204.2\| Arabidopsis thaliana electron carrier/ oxidored...	40	8.2
16	gb\|AC166108.4\| Mus musculus BAC clone RP23-192E10 from chromosom...	40	8.2
17	gb\|AC132352.3\| Mus musculus BAC clone RP24-97D9 from chromosome ...	40	8.2
18	emb\|CT010512.8\| Mouse DNA sequence from clone RP23-283M18 on chr...	40	8.2
19	emb\|AJ512488.2\|PPR512488 Phleum pratense partial phlp4 gene for ...	40	8.2
20	emb\|AJ512487.2\|PPR512487 Phleum pratense partial phlp4 gene for ...	40	8.2
21	emb\|AJ862833.1\| Triticum aestivum partial tria4 gene for pollen ...	40	8.2
22	gb\|AC112150.4\| Mus musculus BAC clone RP24-84I17 from chromosome...	40	8.2
23	gb\|AC101813.5\| Mus musculus chromosome 1, clone RP24-315D8, comp...	40	8.2
24	gb\|AC107789.7\| Mus musculus chromosome 1, clone RP23-409K18, com...	40	8.2
25	gb\|AC102637.7\| Mus musculus chromosome 6, clone RP23-216B9, comp...	40	8.2
26	emb\|AL590403.13\| Human DNA sequence from clone RP13-459B11 on ch...	40	8.2
27	emb\|AL021938.1\|HS232K4 Human DNA sequence from clone RP1-232K4 o...	40	8.2
28	gb\|BT009387.1\| Triticum aestivum clone wlm96.pk035.d7:fis, full ...	40	8.2
29	emb\|AL161553.2\|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, ...	40	8.2
30	emb\|AL161518.2\|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, ...	40	8.2
31	emb\|AL080282.1\|ATT13K14 Arabidopsis thaliana DNA chromosome 4, B...	40	8.2
32	emb\|AL049523.1\|ATT4F9 Arabidopsis thaliana DNA chromosome 4, BAC...	40	8.2
33	gb\|AC009381.10\| Drosophila melanogaster 3L BAC RP98-13N10 (Roswe...	40	8.2
34	gb\|AY133616.1\| Arabidopsis thaliana AT4g20860/T13K14_20 mRNA, co...	40	8.2
35	gb\|AC104037.3\| Homo sapiens chromosome 8, clone RP11-692P18, com...	40	8.2
36	gb\|AC008958.7\| Homo sapiens chromosome 5 clone CTD-2353N24, comp...	40	8.2
37	dbj\|AK221267.1\| Arabidopsis thaliana mRNA for berberine bridge e...	40	8.2
38	gb\|AF285839.1\|AF285839S1 Mus musculus NKR-P1A (NKR-P1A) gene, ex...	40	8.2
39	gb\|AC016643.6\|AC016643 Homo sapiens chromosome 5 clone RP11-480H...	40	8.2
40	gb\|AF367269.1\|AF367269 Arabidopsis thaliana AT4g20860/T13K14_20 ...	40	8.2
41	gb\|AC079468.3\|AC079468 Homo sapiens chromosome 5 clone RP11-403A...	40	8.2
42	gb\|DQ251188.1\| Phleum pratense major pollen allergen Phl p 4 pre...	40	8.2
43	dbj\|AK109673.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	8.2
44	gb\|AY105422.1\| Zea mays PCO091928 mRNA sequence	40	8.2
45	gb\|AE003515.4\| Drosophila melanogaster chromosome 3L, section 70...	40	8.2
46	gb\|AF118222.1\|F3H7 Arabidopsis thaliana BAC F3H7	40	8.2
47	emb\|BX001046.10\| Zebrafish DNA sequence from clone DKEY-69J10 in...	40	8.2
48	gb\|AE016958.1\| Mycobacterium avium subsp. paratuberculosis str. ...	40	8.2

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 1e-20
 Identities = 204/251 (81%), Gaps = 2/251 (0%)
 Strand = Plus / Plus

                                                                            
Query: 190      ggaagaggagggatgctctgctcattcctgaagaaatcatggggatccaccatggtcttg 249
                ||||||||||| || |||||||||||||||||||||||||  ||||| ||||||| ||| 
Sbjct: 20388251 ggaagaggaggaatactctgctcattcctgaagaaatcatcaggatcaaccatggccttc 20388310

                                                                            
Query: 250      acagctgctaacctcttaaaattacctttgaaatacttgtgtccccatactgtagcctt- 308
                || || || |||||||  ||||| ||  |||||||||| |  ||||| ||  || |||| 
Sbjct: 20388311 accgccgccaacctctcgaaattgcccctgaaatacttctccccccaaaccttacccttc 20388370

                                                                            
Query: 309      gtgatagctggtgacgttgccgtccaactcattcgtccccaggtcgaggtccctgtagtt 368
                ||| ||||| || || || || || | ||||||| |||| || || | ||||||||||||
Sbjct: 20388371 gtg-tagctcgtcacattcccctcgatctcattcctcccaagatccatgtccctgtagtt 20388429

                                                                            
Query: 369      gacatacacagcccttgggttgctggacacgtaaggctccatctcgttgtagagtcccct 428
                ||||||| |||  ||||||||  |||||||||| ||||||||||||   || || |||||
Sbjct: 20388430 gacatacccagttcttgggttcttggacacgtacggctccatctcgccatacagccccct 20388489

                           
Query: 429      gacccagctca 439
                |||||||||||
Sbjct: 20388490 gacccagctca 20388500



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 196      ggagggatgctctgctcattcctgaagaaatcatggggatccacc 240
                ||||| ||||||||||||||||||||| ||||||  |||||||||
Sbjct: 20464714 ggaggaatgctctgctcattcctgaagtaatcatcaggatccacc 20464758



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 349      aggtcgaggtccctgtagttgacatacacagcccttgggttgctggacacgtaaggctcc 408
                ||||||||||||||||||||||| ||  |  |||| |||||  |||||||||| ||||||
Sbjct: 20403669 aggtcgaggtccctgtagttgacgtaggcgcccctggggttcttggacacgtacggctcc 20403728

                     
Query: 409      atctc 413
                |||||
Sbjct: 20403729 atctc 20403733



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                            
Query: 473      accagaaggagtagtactggatctggtaaaggttcccccgccggtgcgggaacggcgttt 532
                ||||||| |||||||||||||  | ||| ||||| |||  ||||||||||||||||||  
Sbjct: 20388534 accagaacgagtagtactggaggttgtacaggttgcccttccggtgcgggaacggcgtcg 20388593

                            
Query: 533      ccgacggcgaga 544
                ||| ||||||||
Sbjct: 20388594 ccgccggcgaga 20388605



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 349      aggtcgaggtccctgtagttgac 371
                |||||||||||||||||||||||
Sbjct: 20420429 aggtcgaggtccctgtagttgac 20420451



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 196      ggagggatgctctgctcattcctgaagaa 224
                ||||| ||||||||||| |||||||||||
Sbjct: 20420270 ggaggaatgctctgctcgttcctgaagaa 20420298



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 199      gggatgctctgctcattcctgaag 222
                |||||||||||||| |||||||||
Sbjct: 20485049 gggatgctctgctcgttcctgaag 20485072



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 199      gggatgctctgctcattcctgaag 222
                |||||||||||||| |||||||||
Sbjct: 20436766 gggatgctctgctcgttcctgaag 20436789

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>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0016D02
          Length = 157822

 Score =  109 bits (55), Expect = 1e-20
 Identities = 204/251 (81%), Gaps = 2/251 (0%)
 Strand = Plus / Plus

                                                                          
Query: 190    ggaagaggagggatgctctgctcattcctgaagaaatcatggggatccaccatggtcttg 249
              ||||||||||| || |||||||||||||||||||||||||  ||||| ||||||| ||| 
Sbjct: 111646 ggaagaggaggaatactctgctcattcctgaagaaatcatcaggatcaaccatggccttc 111705

                                                                          
Query: 250    acagctgctaacctcttaaaattacctttgaaatacttgtgtccccatactgtagcctt- 308
              || || || |||||||  ||||| ||  |||||||||| |  ||||| ||  || |||| 
Sbjct: 111706 accgccgccaacctctcgaaattgcccctgaaatacttctccccccaaaccttacccttc 111765

                                                                          
Query: 309    gtgatagctggtgacgttgccgtccaactcattcgtccccaggtcgaggtccctgtagtt 368
              ||| ||||| || || || || || | ||||||| |||| || || | ||||||||||||
Sbjct: 111766 gtg-tagctcgtcacattcccctcgatctcattcctcccaagatccatgtccctgtagtt 111824

                                                                          
Query: 369    gacatacacagcccttgggttgctggacacgtaaggctccatctcgttgtagagtcccct 428
              ||||||| |||  ||||||||  |||||||||| ||||||||||||   || || |||||
Sbjct: 111825 gacatacccagttcttgggttcttggacacgtacggctccatctcgccatacagccccct 111884

                         
Query: 429    gacccagctca 439
              |||||||||||
Sbjct: 111885 gacccagctca 111895



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 349    aggtcgaggtccctgtagttgacatacacagcccttgggttgctggacacgtaaggctcc 408
              ||||||||||||||||||||||| ||  |  |||| |||||  |||||||||| ||||||
Sbjct: 127064 aggtcgaggtccctgtagttgacgtaggcgcccctggggttcttggacacgtacggctcc 127123

                   
Query: 409    atctc 413
              |||||
Sbjct: 127124 atctc 127128



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                          
Query: 473    accagaaggagtagtactggatctggtaaaggttcccccgccggtgcgggaacggcgttt 532
              ||||||| |||||||||||||  | ||| ||||| |||  ||||||||||||||||||  
Sbjct: 111929 accagaacgagtagtactggaggttgtacaggttgcccttccggtgcgggaacggcgtcg 111988

                          
Query: 533    ccgacggcgaga 544
              ||| ||||||||
Sbjct: 111989 ccgccggcgaga 112000



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 349    aggtcgaggtccctgtagttgac 371
              |||||||||||||||||||||||
Sbjct: 143824 aggtcgaggtccctgtagttgac 143846



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 196    ggagggatgctctgctcattcctgaagaa 224
              ||||| ||||||||||| |||||||||||
Sbjct: 143665 ggaggaatgctctgctcgttcctgaagaa 143693

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>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
          Length = 143392

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 29/29 (100%)
 Strand = Plus / Minus

                                          
Query: 198   agggatgctctgctcattcctgaagaaat 226
             |||||||||||||||||||||||||||||
Sbjct: 72249 agggatgctctgctcattcctgaagaaat 72221



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 190    ggaagaggagggatgctctgctcattcctgaagaa 224
              |||||||| ||||||||||| |||| |||||||||
Sbjct: 130949 ggaagaggcgggatgctctgttcatgcctgaagaa 130915



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 190   ggaagaggagggatgctctgctcattcctgaagaa 224
             |||||||| |||||||||||||||| | |||||||
Sbjct: 92466 ggaagaggtgggatgctctgctcatgcttgaagaa 92432

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>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0659D09
          Length = 168253

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 196   ggagggatgctctgctcattcctgaagaaatcatggggatccacc 240
             ||||| ||||||||||||||||||||| ||||||  |||||||||
Sbjct: 37009 ggaggaatgctctgctcattcctgaagtaatcatcaggatccacc 37053



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 199   gggatgctctgctcattcctgaag 222
             |||||||||||||| |||||||||
Sbjct: 57344 gggatgctctgctcgttcctgaag 57367



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            |||||||||||||| |||||||||
Sbjct: 9061 gggatgctctgctcgttcctgaag 9084

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>dbj|AK105176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H12, full
            insert sequence
          Length = 1757

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 349  aggtcgaggtccctgtagttgacatacacagcccttgggttgctggacacgtaaggctcc 408
            ||||||||||||||||||||||| ||  |  |||| |||||  |||||||||| ||||||
Sbjct: 1467 aggtcgaggtccctgtagttgacgtaggcgcccctggggttcttggacacgtacggctcc 1408

                 
Query: 409  atctc 413
            |||||
Sbjct: 1407 atctc 1403

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>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4
          Length = 1608

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 199  gggatgctctgctcattcctgaagaaatcatggggatccacc 240
            |||||||||||||| ||||||||| | || ||||||||||||
Sbjct: 1538 gggatgctctgctcgttcctgaagtagtcctggggatccacc 1497

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>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds
          Length = 1569

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            ||||||||||||||||||||||||
Sbjct: 1556 gggatgctctgctcattcctgaag 1533

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>dbj|AP004983.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04L20, TM0437b,
             complete sequence
          Length = 51960

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 190   ggaagaggagggatgctctgctcattcctgaa 221
             ||||| ||||||||||||||||||| ||||||
Sbjct: 36699 ggaagtggagggatgctctgctcatgcctgaa 36730



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 190   ggaagaggagggatgctctgctcattcctgaa 221
             ||||| ||||||||||||||||||| ||||||
Sbjct: 27043 ggaagtggagggatgctctgctcatgcctgaa 27074

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>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full
            insert sequence
          Length = 2030

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 349  aggtcgaggtccctgtagttgac 371
            |||||||||||||||||||||||
Sbjct: 1437 aggtcgaggtccctgtagttgac 1415



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 196  ggagggatgctctgctcattcctgaagaa 224
            ||||| ||||||||||| |||||||||||
Sbjct: 1596 ggaggaatgctctgctcgttcctgaagaa 1568

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>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4,
            allele A
          Length = 1603

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 199  gggatgctctgctcattcctgaagaaatcatggggatccacc 240
            |||||||||||||| ||||||||| | || || |||||||||
Sbjct: 1535 gggatgctctgctcgttcctgaagtagtcctgaggatccacc 1494

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>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele
            B
          Length = 1644

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 199  gggatgctctgctcattcctgaagaaatcatggggatccacc 240
            |||||||||||||| ||||||||| | || || |||||||||
Sbjct: 1544 gggatgctctgctcgttcctgaagtagtcctgaggatccacc 1503

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>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele
            A
          Length = 1603

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 199  gggatgctctgctcattcctgaagaaatcatggggatccacc 240
            |||||||||||||| ||||||||| | || || |||||||||
Sbjct: 1535 gggatgctctgctcgttcctgaagtagtcctgaggatccacc 1494



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 336  ctcattcgtccccaggtcgaggtccctgtagttgacatac 375
            ||||||| | || ||||||| ||||||||||||| |||||
Sbjct: 1398 ctcattcctgccaaggtcgatgtccctgtagttggcatac 1359

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>gb|AC097502.3| Homo sapiens BAC clone RP11-340B18 from 4, complete sequence
          Length = 168254

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    tctgctcattcctgaagaaat 226
              |||||||||||||||||||||
Sbjct: 111710 tctgctcattcctgaagaaat 111730

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>emb|AL121766.5|CNS01DSA Human chromosome 14 DNA sequence BAC R-412H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158064

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 255   tgctaacctcttaaaattacctttgaaat 283
             |||||||||||||||||||| ||| ||||
Sbjct: 67332 tgctaacctcttaaaattacatttcaaat 67304

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>ref|NM_118204.2| Arabidopsis thaliana electron carrier/ oxidoreductase AT4G20860 mRNA,
            complete cds
          Length = 1846

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 257  ctaacctcttaaaattacctttgaaata 284
            |||| ||||| |||||||||||||||||
Sbjct: 1626 ctaatctcttgaaattacctttgaaata 1599

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>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence
          Length = 188836

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   tatagtatcaatcattttgg 183
             ||||||||||||||||||||
Sbjct: 81522 tatagtatcaatcattttgg 81541

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>gb|AC132352.3| Mus musculus BAC clone RP24-97D9 from chromosome 6, complete sequence
          Length = 168117

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   aacctcttaaaattaccttt 278
             ||||||||||||||||||||
Sbjct: 97327 aacctcttaaaattaccttt 97346

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>emb|CT010512.8| Mouse DNA sequence from clone RP23-283M18 on chromosome 16, complete
              sequence
          Length = 202415

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 138    tgagatcagatggtatctcc 157
              ||||||||||||||||||||
Sbjct: 198996 tgagatcagatggtatctcc 198977

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>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4,
            allele B1
          Length = 1580

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            |||||||||||||| |||||||||
Sbjct: 1505 gggatgctctgctcgttcctgaag 1482

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>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4,
            allele A1
          Length = 1567

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            |||||||||||||| |||||||||
Sbjct: 1505 gggatgctctgctcgttcctgaag 1482

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>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4,
            allele B
          Length = 1603

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            |||||||| |||||||||||||||
Sbjct: 1535 gggatgctttgctcattcctgaag 1512

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>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence
          Length = 211640

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 138    tgagatcagatggtatctcc 157
              ||||||||||||||||||||
Sbjct: 195095 tgagatcagatggtatctcc 195114

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>gb|AC101813.5| Mus musculus chromosome 1, clone RP24-315D8, complete sequence
          Length = 159286

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   tatagtatcaatcattttgg 183
             ||||||||||||||||||||
Sbjct: 90234 tatagtatcaatcattttgg 90253

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>gb|AC107789.7| Mus musculus chromosome 1, clone RP23-409K18, complete sequence
          Length = 242347

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    ttaaaattacctttgaaata 284
              ||||||||||||||||||||
Sbjct: 118284 ttaaaattacctttgaaata 118265

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>gb|AC102637.7| Mus musculus chromosome 6, clone RP23-216B9, complete sequence
          Length = 196356

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    aacctcttaaaattaccttt 278
              ||||||||||||||||||||
Sbjct: 184050 aacctcttaaaattaccttt 184031

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>emb|AL590403.13| Human DNA sequence from clone RP13-459B11 on chromosome 6 Contains the
              GRM4 gene for glutamate receptor (metabotropic 4) and a CpG
              island, complete sequence
          Length = 118771

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    gaggagggatgctctgctca 213
              ||||||||||||||||||||
Sbjct: 105791 gaggagggatgctctgctca 105772

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>emb|AL021938.1|HS232K4 Human DNA sequence from clone RP1-232K4 on chromosome 6p22.3 Contains the
              3'end of the JMJ gene for jumonji protein and 2 CpG
              islands, complete sequence
          Length = 198161

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    cacagcccttgggttgctgg 394
              ||||||||||||||||||||
Sbjct: 176732 cacagcccttgggttgctgg 176713

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>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence
          Length = 1805

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            |||||||||||||| |||||||||
Sbjct: 1586 gggatgctctgctcgttcctgaag 1563

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>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53
          Length = 197568

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 257    ctaacctcttaaaattacctttgaaata 284
              |||| ||||| |||||||||||||||||
Sbjct: 178392 ctaatctcttgaaattacctttgaaata 178365

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>emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 30
          Length = 198136

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   taaacacgtgacaacaccaa 78
            ||||||||||||||||||||
Sbjct: 8263 taaacacgtgacaacaccaa 8282

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>emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project)
          Length = 91570

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 257   ctaacctcttaaaattacctttgaaata 284
             |||| ||||| |||||||||||||||||
Sbjct: 13346 ctaatctcttgaaattacctttgaaata 13319

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>emb|AL049523.1|ATT4F9 Arabidopsis thaliana DNA chromosome 4, BAC clone  T4F9 (ESSA project)
          Length = 78530

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    taaacacgtgacaacaccaa 78
             ||||||||||||||||||||
Sbjct: 55628 taaacacgtgacaacaccaa 55647

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>gb|AC009381.10| Drosophila melanogaster 3L BAC RP98-13N10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167816

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 262   ctcttaaaattacctttgaaatac 285
             ||||||| ||||||||||||||||
Sbjct: 70724 ctcttaacattacctttgaaatac 70701

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>gb|AY133616.1| Arabidopsis thaliana AT4g20860/T13K14_20 mRNA, complete cds
          Length = 1593

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 257  ctaacctcttaaaattacctttgaaata 284
            |||| ||||| |||||||||||||||||
Sbjct: 1522 ctaatctcttgaaattacctttgaaata 1495

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>gb|AC104037.3| Homo sapiens chromosome 8, clone RP11-692P18, complete sequence
          Length = 152267

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   gtcgaggtccctgtagttga 370
             ||||||||||||||||||||
Sbjct: 25667 gtcgaggtccctgtagttga 25648

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>gb|AC008958.7| Homo sapiens chromosome 5 clone CTD-2353N24, complete sequence
          Length = 109526

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   ggggaagaggagggatgctc 207
             ||||||||||||||||||||
Sbjct: 30078 ggggaagaggagggatgctc 30059

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>dbj|AK221267.1| Arabidopsis thaliana mRNA for berberine bridge enzyme - like
           protein, complete cds, clone: RAFL24-14-G04
          Length = 556

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 257 ctaacctcttaaaattacctttgaaata 284
           |||| ||||| |||||||||||||||||
Sbjct: 334 ctaatctcttgaaattacctttgaaata 307

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>gb|AF285839.1|AF285839S1 Mus musculus NKR-P1A (NKR-P1A) gene, exon 1
          Length = 32428

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   aacctcttaaaattaccttt 278
             ||||||||||||||||||||
Sbjct: 22013 aacctcttaaaattaccttt 22032

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>gb|AC016643.6|AC016643 Homo sapiens chromosome 5 clone RP11-480H11, complete sequence
          Length = 179969

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   ggggaagaggagggatgctc 207
             ||||||||||||||||||||
Sbjct: 25115 ggggaagaggagggatgctc 25134

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>gb|AF367269.1|AF367269 Arabidopsis thaliana AT4g20860/T13K14_20 mRNA, complete cds
          Length = 1793

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 257  ctaacctcttaaaattacctttgaaata 284
            |||| ||||| |||||||||||||||||
Sbjct: 1622 ctaatctcttgaaattacctttgaaata 1595

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>gb|AC079468.3|AC079468 Homo sapiens chromosome 5 clone RP11-403A7, complete sequence
          Length = 167656

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    ggggaagaggagggatgctc 207
              ||||||||||||||||||||
Sbjct: 149833 ggggaagaggagggatgctc 149814

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>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA,
            complete cds
          Length = 1741

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            |||||||||||||| |||||||||
Sbjct: 1591 gggatgctctgctcgttcctgaag 1568

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>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full
            insert sequence
          Length = 1972

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 199  gggatgctctgctcattcctgaag 222
            |||||||||||||| |||||||||
Sbjct: 1623 gggatgctctgctcgttcctgaag 1600

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>gb|AY105422.1| Zea mays PCO091928 mRNA sequence
          Length = 664

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 199 gggatgctctgctcattcctgaag 222
           |||||||||||||| |||||||||
Sbjct: 138 gggatgctctgctcgttcctgaag 115

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>gb|AE003515.4| Drosophila melanogaster chromosome 3L, section 70 of 83 of the complete
              sequence
          Length = 234263

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 262    ctcttaaaattacctttgaaatac 285
              ||||||| ||||||||||||||||
Sbjct: 140048 ctcttaacattacctttgaaatac 140071

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>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   taaacacgtgacaacaccaa 78
            ||||||||||||||||||||
Sbjct: 3503 taaacacgtgacaacaccaa 3484

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>emb|BX001046.10| Zebrafish DNA sequence from clone DKEY-69J10 in linkage group 25,
             complete sequence
          Length = 87501

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    caacaccaagaattaagagt 89
             ||||||||||||||||||||
Sbjct: 76249 caacaccaagaattaagagt 76268

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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 571     tccagcatgagcagcgccgc 590
               ||||||||||||||||||||
Sbjct: 1158651 tccagcatgagcagcgccgc 1158632


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,319,013
Number of Sequences: 3902068
Number of extensions: 4319013
Number of successful extensions: 103524
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103310
Number of HSP's gapped (non-prelim): 211
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result