>RPOD_CLOAB (P33656) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 378

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 420 HEVEVDEPVGGALLPDGVRVDVPLRGYLPD 509
           HE+EV+E      +P+G+ +D P+R YL +
Sbjct: 86  HEIEVEEEDLDLTIPEGIAIDDPVRMYLKE 115

>SRP72_YEAST (P38688) Signal recognition particle 72 kDa protein homolog (SRP72)|
          Length = 640

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 611 LDMMHSEDRESKRGIMDAVIDFLHKSGLKEEAGFIWEVAAQRN 483
           LD +  +D ES RGI+     + +K+GL +EA  I++  A  N
Sbjct: 107 LDTVLKKDIESLRGILHVRAQYCYKNGLYQEAFKIYQHLASHN 149

>POL2_BAYMJ (Q01207) Genome polyprotein 2 [Contains: Helper component|
           proteinase (EC 3.4.22.45) (HC-pro); 70 kDa protein]
          Length = 890

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = -1

Query: 635 VRDHARYFLDMMHSEDRESKRGIMDAVIDFLHKSGLKEEAGFIWEVAAQRNVYPDSVREK 456
           VRD +    D +HS D +        V+  + +  L+E AG I E  +   +   S    
Sbjct: 539 VRDLSFNDDDDLHSVDLDEAGSRFGEVVSLIARGNLRELAGAIPESLSNLTLLQTSA-SG 597

Query: 455 SSSYWLINLHLMSEGTAVTA 396
           S  Y ++ L+L + G A+TA
Sbjct: 598 SGFYTMVALYLATLGDAITA 617

>UFD4_YEAST (P33202) Ubiquitin fusion degradation protein 4 (UB fusion protein 4)|
          Length = 1483

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +1

Query: 223  AAKSGNWKRCSSFS----MDCRTSDDPVTXXXXPQPV 321
            A KS N  RC+S+S    MD  T+DD +T    P+P+
Sbjct: 1155 ARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEPL 1191

>YK69_YEAST (P36165) Hypothetical 102.7 kDa protein in PRP16-SRP40 intergenic|
           region
          Length = 910

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 516 GLLLEPRLVEEVYDRVHYAPLALPVLAVHHVQEIPGMVPHVL 641
           G L E  L+  V        +   +L+VHH +EIP ++ H+L
Sbjct: 299 GTLFELDLLPRVISGSSAGAIVASILSVHHKEEIPVLLNHIL 340

>YIIE_SHIFL (P0ADQ6) Hypothetical protein yiiE|
          Length = 70

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/41 (34%), Positives = 28/41 (68%)
 Frame = -1

Query: 338 ERIDIVTGWGRRSRVTGSSLVRQSIEKLLHLFQFPLFAARG 216
           +R++ + GW + SR   S+++R+++E+ L   QFP+  A+G
Sbjct: 14  KRLNKLRGWRKVSR---SAILREAVEQYLERQQFPVRKAKG 51

>YIIE_ECOLI (P0ADQ5) Hypothetical protein yiiE|
          Length = 70

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/41 (34%), Positives = 28/41 (68%)
 Frame = -1

Query: 338 ERIDIVTGWGRRSRVTGSSLVRQSIEKLLHLFQFPLFAARG 216
           +R++ + GW + SR   S+++R+++E+ L   QFP+  A+G
Sbjct: 14  KRLNKLRGWRKVSR---SAILREAVEQYLERQQFPVRKAKG 51

>C77A2_SOLME (P37124) Cytochrome P450 77A2 (EC 1.14.-.-) (CYPLXXVIIA2)|
           (P-450EG5)
          Length = 511

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = +3

Query: 411 ALRHEVEVDEPVGGALLPDGVRVDVPLRGYLPDEAGLLLEPRLVEEVYDRVHYAPLALPV 590
           +L H V     +GG  +P GV V++ L G + D+  L  EP   +   DR +       +
Sbjct: 382 SLTHAVTEPAKLGGYDIPTGVNVEIFLPG-ISDDPNLWSEPEKFDP--DRFYLGKEDADI 438

Query: 591 LAVHHVQEIPGMVPHVLAAGLGVGQV 668
             V  V+ IP  +   +  GL +  V
Sbjct: 439 TGVSGVKMIPFGMGRRICPGLNMATV 464

>MNTA_LISIN (Q92AG1) Manganese-binding lipoprotein mntA precursor|
          Length = 310

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
 Frame = -1

Query: 665 LPDAEPGGENV-RDHARYFLDMMHSEDRESKRGIMD-------------AVIDFLHKSGL 528
           L  A+P   N  +++A+ ++D + + D+E+K+   D             A   F  + GL
Sbjct: 159 LVKADPDNANFYKENAKKYIDKLATLDKEAKQKFADLPENQKTLVTSEGAFKYFAARYGL 218

Query: 527 KEEAGFIWEVAAQRNVYPDSVRE 459
           K  A +IWE+  +    PD +++
Sbjct: 219 K--AAYIWEINTESQGTPDQMKQ 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,217,862
Number of Sequences: 219361
Number of extensions: 1423027
Number of successful extensions: 5139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5137
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)