Clone Name | rbasd11b12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 228 bits (115), Expect = 2e-56 Identities = 445/555 (80%) Strand = Plus / Plus Query: 132 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 191 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 27435096 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 27435155 Query: 192 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 251 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 27435156 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 27435215 Query: 252 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 311 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 27435216 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 27435275 Query: 312 ccagccggtgacgatgtcgatcctctccgggcaggaccccatgagcagcatctgcctgtg 371 |||||| ||||| ||||| || || || ||||| ||||| ||| ||||||||||| Sbjct: 27435276 ccagccagtgacaatgtcaattctttcagggcatttgcccattgtcagaatctgcctgtg 27435335 Query: 372 gaaccatgcgagcgtcctggagagggcggtgacggcggtgccctcagacatgaggtggag 431 |||||| || || ||||| || || || || || || |||||||| ||||| ||||| | Sbjct: 27435336 gaaccaagccagtgtccttgacagcgcagtcactgcagtgccctccgacatcaggtgtaa 27435395 Query: 432 gttgatgagccagtaggaggagctcttctccctgacggagtccgggtagacgttcctctg 491 |||||||||||| || || | | ||||||||| || || |||||||| || |||||||| Sbjct: 27435396 gttgatgagccaatatgatgggtccttctccctcacagaatccgggtacacattcctctg 27435455 Query: 492 cgcggctacctcccagatgaagccggcctcctccttgagccccgacttgtggaggaagtc 551 || || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct: 27435456 ggcagcaacctcccatatgaagccagcctcctccttgaggccggacttgtgtaggaaatc 27435515 Query: 552 tatgaccgcgtccattatgccccgcttgctctccctgtcctcgctgtgcatcatgtccag 611 |||||| || ||||||| |||| || ||||| |||||||| |||||||||||||||| Sbjct: 27435516 tatgacagcatccattaaaccccttttactctctctgtcctcactgtgcatcatgtccaa 27435575 Query: 612 gaaatacctggcatggtccctcacgttctcgccgccgggctcggcgtcgggcaggtagag 671 |||||| |||| || |||||||| |||| |||||| || || || ||||||| || | Sbjct: 27435576 gaaatatctggtgtgatccctcacattctggccgccaggttctgcatcgggcaaatataa 27435635 Query: 672 caggaacatgtgggc 686 || |||||||||||| Sbjct: 27435636 caagaacatgtgggc 27435650 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 11032240 gagggcggtgacggcggtgc 11032221
>emb|AL928743.1|CNS08CBG Oryza sativa chromosome 12, . BAC OSJNBb0011N16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 55237 Score = 228 bits (115), Expect = 2e-56 Identities = 445/555 (80%) Strand = Plus / Minus Query: 132 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 191 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 46722 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 46663 Query: 192 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 251 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 46662 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 46603 Query: 252 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 311 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 46602 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 46543 Query: 312 ccagccggtgacgatgtcgatcctctccgggcaggaccccatgagcagcatctgcctgtg 371 |||||| ||||| ||||| || || || ||||| ||||| ||| ||||||||||| Sbjct: 46542 ccagccagtgacaatgtcaattctttcagggcatttgcccattgtcagaatctgcctgtg 46483 Query: 372 gaaccatgcgagcgtcctggagagggcggtgacggcggtgccctcagacatgaggtggag 431 |||||| || || ||||| || || || || || || |||||||| ||||| ||||| | Sbjct: 46482 gaaccaagccagtgtccttgacagcgcagtcactgcagtgccctccgacatcaggtgtaa 46423 Query: 432 gttgatgagccagtaggaggagctcttctccctgacggagtccgggtagacgttcctctg 491 |||||||||||| || || | | ||||||||| || || |||||||| || |||||||| Sbjct: 46422 gttgatgagccaatatgatgggtccttctccctcacagaatccgggtacacattcctctg 46363 Query: 492 cgcggctacctcccagatgaagccggcctcctccttgagccccgacttgtggaggaagtc 551 || || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct: 46362 ggcagcaacctcccatatgaagccagcctcctccttgaggccggacttgtgtaggaaatc 46303 Query: 552 tatgaccgcgtccattatgccccgcttgctctccctgtcctcgctgtgcatcatgtccag 611 |||||| || ||||||| |||| || ||||| |||||||| |||||||||||||||| Sbjct: 46302 tatgacagcatccattaaaccccttttactctctctgtcctcactgtgcatcatgtccaa 46243 Query: 612 gaaatacctggcatggtccctcacgttctcgccgccgggctcggcgtcgggcaggtagag 671 |||||| |||| || |||||||| |||| |||||| || || || ||||||| || | Sbjct: 46242 gaaatatctggtgtgatccctcacattctggccgccaggttctgcatcgggcaaatataa 46183 Query: 672 caggaacatgtgggc 686 || |||||||||||| Sbjct: 46182 caagaacatgtgggc 46168
>dbj|AK104070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A07, full insert sequence Length = 1899 Score = 228 bits (115), Expect = 2e-56 Identities = 445/555 (80%) Strand = Plus / Minus Query: 132 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 191 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 1682 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 1623 Query: 192 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 251 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 1622 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 1563 Query: 252 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 311 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 1562 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 1503 Query: 312 ccagccggtgacgatgtcgatcctctccgggcaggaccccatgagcagcatctgcctgtg 371 |||||| ||||| ||||| || || || ||||| ||||| ||| ||||||||||| Sbjct: 1502 ccagccagtgacaatgtcaattctttcagggcatttgcccattgtcagaatctgcctgtg 1443 Query: 372 gaaccatgcgagcgtcctggagagggcggtgacggcggtgccctcagacatgaggtggag 431 |||||| || || ||||| || || || || || || |||||||| ||||| ||||| | Sbjct: 1442 gaaccaagccagtgtccttgacagcgcagtcactgcagtgccctccgacatcaggtgtaa 1383 Query: 432 gttgatgagccagtaggaggagctcttctccctgacggagtccgggtagacgttcctctg 491 |||||||||||| || || | | ||||||||| || || |||||||| || |||||||| Sbjct: 1382 gttgatgagccaatatgatgggtccttctccctcacagaatccgggtacacattcctctg 1323 Query: 492 cgcggctacctcccagatgaagccggcctcctccttgagccccgacttgtggaggaagtc 551 || || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct: 1322 ggcagcaacctcccatatgaagccagcctcctccttgaggccggacttgtgtaggaaatc 1263 Query: 552 tatgaccgcgtccattatgccccgcttgctctccctgtcctcgctgtgcatcatgtccag 611 |||||| || ||||||| |||| || ||||| |||||||| |||||||||||||||| Sbjct: 1262 tatgacagcatccattaaaccccttttactctctctgtcctcactgtgcatcatgtccaa 1203 Query: 612 gaaatacctggcatggtccctcacgttctcgccgccgggctcggcgtcgggcaggtagag 671 |||||| |||| || |||||||| |||| |||||| || || || ||||||| || | Sbjct: 1202 gaaatatctggtgtgatccctcacattctggccgccaggttctgcatcgggcaaatataa 1143 Query: 672 caggaacatgtgggc 686 || |||||||||||| Sbjct: 1142 caagaacatgtgggc 1128
>dbj|AK073506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044K21, full insert sequence Length = 3154 Score = 228 bits (115), Expect = 2e-56 Identities = 445/555 (80%) Strand = Plus / Minus Query: 132 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 191 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 2952 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 2893 Query: 192 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 251 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 2892 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 2833 Query: 252 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 311 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 2832 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 2773 Query: 312 ccagccggtgacgatgtcgatcctctccgggcaggaccccatgagcagcatctgcctgtg 371 |||||| ||||| ||||| || || || ||||| ||||| ||| ||||||||||| Sbjct: 2772 ccagccagtgacaatgtcaattctttcagggcatttgcccattgtcagaatctgcctgtg 2713 Query: 372 gaaccatgcgagcgtcctggagagggcggtgacggcggtgccctcagacatgaggtggag 431 |||||| || || ||||| || || || || || || |||||||| ||||| ||||| | Sbjct: 2712 gaaccaagccagtgtccttgacagcgcagtcactgcagtgccctccgacatcaggtgtaa 2653 Query: 432 gttgatgagccagtaggaggagctcttctccctgacggagtccgggtagacgttcctctg 491 |||||||||||| || || | | ||||||||| || || |||||||| || |||||||| Sbjct: 2652 gttgatgagccaatatgatgggtccttctccctcacagaatccgggtacacattcctctg 2593 Query: 492 cgcggctacctcccagatgaagccggcctcctccttgagccccgacttgtggaggaagtc 551 || || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct: 2592 ggcagcaacctcccatatgaagccagcctcctccttgaggccggacttgtgtaggaaatc 2533 Query: 552 tatgaccgcgtccattatgccccgcttgctctccctgtcctcgctgtgcatcatgtccag 611 |||||| || ||||||| |||| || ||||| |||||||| |||||||||||||||| Sbjct: 2532 tatgacagcatccattaaaccccttttactctctctgtcctcactgtgcatcatgtccaa 2473 Query: 612 gaaatacctggcatggtccctcacgttctcgccgccgggctcggcgtcgggcaggtagag 671 |||||| |||| || |||||||| |||| |||||| || || || ||||||| || | Sbjct: 2472 gaaatatctggtgtgatccctcacattctggccgccaggttctgcatcgggcaaatataa 2413 Query: 672 caggaacatgtgggc 686 || |||||||||||| Sbjct: 2412 caagaacatgtgggc 2398
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 228 bits (115), Expect = 2e-56 Identities = 445/555 (80%) Strand = Plus / Plus Query: 132 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 191 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 27360696 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 27360755 Query: 192 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 251 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 27360756 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 27360815 Query: 252 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 311 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 27360816 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 27360875 Query: 312 ccagccggtgacgatgtcgatcctctccgggcaggaccccatgagcagcatctgcctgtg 371 |||||| ||||| ||||| || || || ||||| ||||| ||| ||||||||||| Sbjct: 27360876 ccagccagtgacaatgtcaattctttcagggcatttgcccattgtcagaatctgcctgtg 27360935 Query: 372 gaaccatgcgagcgtcctggagagggcggtgacggcggtgccctcagacatgaggtggag 431 |||||| || || ||||| || || || || || || |||||||| ||||| ||||| | Sbjct: 27360936 gaaccaagccagtgtccttgacagcgcagtcactgcagtgccctccgacatcaggtgtaa 27360995 Query: 432 gttgatgagccagtaggaggagctcttctccctgacggagtccgggtagacgttcctctg 491 |||||||||||| || || | | ||||||||| || || |||||||| || |||||||| Sbjct: 27360996 gttgatgagccaatatgatgggtccttctccctcacagaatccgggtacacattcctctg 27361055 Query: 492 cgcggctacctcccagatgaagccggcctcctccttgagccccgacttgtggaggaagtc 551 || || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct: 27361056 ggcagcaacctcccatatgaagccagcctcctccttgaggccggacttgtgtaggaaatc 27361115 Query: 552 tatgaccgcgtccattatgccccgcttgctctccctgtcctcgctgtgcatcatgtccag 611 |||||| || ||||||| |||| || ||||| |||||||| |||||||||||||||| Sbjct: 27361116 tatgacagcatccattaaaccccttttactctctctgtcctcactgtgcatcatgtccaa 27361175 Query: 612 gaaatacctggcatggtccctcacgttctcgccgccgggctcggcgtcgggcaggtagag 671 |||||| |||| || |||||||| |||| |||||| || || || ||||||| || | Sbjct: 27361176 gaaatatctggtgtgatccctcacattctggccgccaggttctgcatcgggcaaatataa 27361235 Query: 672 caggaacatgtgggc 686 || |||||||||||| Sbjct: 27361236 caagaacatgtgggc 27361250 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 11031939 gagggcggtgacggcggtgc 11031920
>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109222 Score = 228 bits (115), Expect = 2e-56 Identities = 445/555 (80%) Strand = Plus / Plus Query: 132 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 191 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 11010 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 11069 Query: 192 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 251 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 11070 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 11129 Query: 252 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 311 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 11130 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 11189 Query: 312 ccagccggtgacgatgtcgatcctctccgggcaggaccccatgagcagcatctgcctgtg 371 |||||| ||||| ||||| || || || ||||| ||||| ||| ||||||||||| Sbjct: 11190 ccagccagtgacaatgtcaattctttcagggcatttgcccattgtcagaatctgcctgtg 11249 Query: 372 gaaccatgcgagcgtcctggagagggcggtgacggcggtgccctcagacatgaggtggag 431 |||||| || || ||||| || || || || || || |||||||| ||||| ||||| | Sbjct: 11250 gaaccaagccagtgtccttgacagcgcagtcactgcagtgccctccgacatcaggtgtaa 11309 Query: 432 gttgatgagccagtaggaggagctcttctccctgacggagtccgggtagacgttcctctg 491 |||||||||||| || || | | ||||||||| || || |||||||| || |||||||| Sbjct: 11310 gttgatgagccaatatgatgggtccttctccctcacagaatccgggtacacattcctctg 11369 Query: 492 cgcggctacctcccagatgaagccggcctcctccttgagccccgacttgtggaggaagtc 551 || || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct: 11370 ggcagcaacctcccatatgaagccagcctcctccttgaggccggacttgtgtaggaaatc 11429 Query: 552 tatgaccgcgtccattatgccccgcttgctctccctgtcctcgctgtgcatcatgtccag 611 |||||| || ||||||| |||| || ||||| |||||||| |||||||||||||||| Sbjct: 11430 tatgacagcatccattaaaccccttttactctctctgtcctcactgtgcatcatgtccaa 11489 Query: 612 gaaatacctggcatggtccctcacgttctcgccgccgggctcggcgtcgggcaggtagag 671 |||||| |||| || |||||||| |||| |||||| || || || ||||||| || | Sbjct: 11490 gaaatatctggtgtgatccctcacattctggccgccaggttctgcatcgggcaaatataa 11549 Query: 672 caggaacatgtgggc 686 || |||||||||||| Sbjct: 11550 caagaacatgtgggc 11564
>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124605 Score = 228 bits (115), Expect = 2e-56 Identities = 445/555 (80%) Strand = Plus / Plus Query: 132 ctagagcagatgcatgcgctcgacgtaggggttgtgcagccactggctgagcggctcccc 191 ||||||||||||||||||||| || || || |||||||||||| | || |||||||| Sbjct: 103416 ctagagcagatgcatgcgctcaacataaggattgtgcagccacctattcagtggctcccc 103475 Query: 192 gcacccgacgaagcagccggtgttgccgcgcgcggcgaagagcgggaactggaagagatg 251 || || |||||||| || || ||||| |||| || || || |||||| | ||||||||| Sbjct: 103476 acatccaacgaagcatccagtattgcctcgcgtggtgacgaacgggaattcgaagagatg 103535 Query: 252 cagcagcttctcgatggactgccggacgagcgacgacccggtgaccctgctcctcctccc 311 |||||||||| | ||||| | || | || |||||||| |||||||||||||| || Sbjct: 103536 tagcagcttctgaactgactgtctaaccaaggaagacccggttaccctgctcctcctgcc 103595 Query: 312 ccagccggtgacgatgtcgatcctctccgggcaggaccccatgagcagcatctgcctgtg 371 |||||| ||||| ||||| || || || ||||| ||||| ||| ||||||||||| Sbjct: 103596 ccagccagtgacaatgtcaattctttcagggcatttgcccattgtcagaatctgcctgtg 103655 Query: 372 gaaccatgcgagcgtcctggagagggcggtgacggcggtgccctcagacatgaggtggag 431 |||||| || || ||||| || || || || || || |||||||| ||||| ||||| | Sbjct: 103656 gaaccaagccagtgtccttgacagcgcagtcactgcagtgccctccgacatcaggtgtaa 103715 Query: 432 gttgatgagccagtaggaggagctcttctccctgacggagtccgggtagacgttcctctg 491 |||||||||||| || || | | ||||||||| || || |||||||| || |||||||| Sbjct: 103716 gttgatgagccaatatgatgggtccttctccctcacagaatccgggtacacattcctctg 103775 Query: 492 cgcggctacctcccagatgaagccggcctcctccttgagccccgacttgtggaggaagtc 551 || || |||||||| |||||||| |||||||||||||| || |||||||| ||||| || Sbjct: 103776 ggcagcaacctcccatatgaagccagcctcctccttgaggccggacttgtgtaggaaatc 103835 Query: 552 tatgaccgcgtccattatgccccgcttgctctccctgtcctcgctgtgcatcatgtccag 611 |||||| || ||||||| |||| || ||||| |||||||| |||||||||||||||| Sbjct: 103836 tatgacagcatccattaaaccccttttactctctctgtcctcactgtgcatcatgtccaa 103895 Query: 612 gaaatacctggcatggtccctcacgttctcgccgccgggctcggcgtcgggcaggtagag 671 |||||| |||| || |||||||| |||| |||||| || || || ||||||| || | Sbjct: 103896 gaaatatctggtgtgatccctcacattctggccgccaggttctgcatcgggcaaatataa 103955 Query: 672 caggaacatgtgggc 686 || |||||||||||| Sbjct: 103956 caagaacatgtgggc 103970
>gb|AY112196.1| Zea mays CL12485_1 mRNA sequence Length = 746 Score = 147 bits (74), Expect = 6e-32 Identities = 226/274 (82%), Gaps = 2/274 (0%) Strand = Plus / Plus Query: 295 accctgctcctcctcccccagccggtgacgatgtcgatcctctccgggc-aggaccccat 353 |||||||||||||| |||||||| ||||| ||||| || || || |||| || ||| || Sbjct: 474 accctgctcctcctgccccagccagtgacaatgtcaattctttcagggccagtgcccaat 533 Query: 354 gagcagcatctgcctgtggaaccatgcgagcgtcctggagagggcggtgacggcggtgcc 413 | ||| | |||||| |||||||| || ||||||||||| || || || || || ||||| Sbjct: 534 gt-cagaacctgcctatggaaccaggcaagcgtcctggacagtgcagtaactgctgtgcc 592 Query: 414 ctcagacatgaggtggaggttgatgagccagtaggaggagctcttctccctgacggagtc 473 ||||||||| ||||| |||||||||||||| || || |||||||||||||| || || || Sbjct: 593 ctcagacatcaggtgaaggttgatgagccaatacgacgagctcttctcccttacagaatc 652 Query: 474 cgggtagacgttcctctgcgcggctacctcccagatgaagccggcctcctccttgagccc 533 ||||| |||||| |||| || || |||||||| || ||||| || ||||||||||| || Sbjct: 653 tgggtacacgttcttctgtgcagcaacctcccatataaagcctgcttcctccttgagacc 712 Query: 534 cgacttgtggaggaagtctatgaccgcgtccatt 567 |||||||| | |||||||||||| || |||||| Sbjct: 713 ggacttgtgcaagaagtctatgacagcatccatt 746
>ref|NM_202131.1| Arabidopsis thaliana ATP binding / damaged DNA binding AT1G18900 transcript variant AT1G18900.2 mRNA, complete cds Length = 3197 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 574 cgcttgctctccctgtcctcgctgtgcatcatgtccaggaaat 616 ||||||||||||||||||||||| ||||| | |||||||||| Sbjct: 2501 cgcttgctctccctgtcctcgctatgcataagatccaggaaat 2459
>ref|NM_101747.2| Arabidopsis thaliana ATP binding / damaged DNA binding AT1G18900 transcript variant AT1G18900.1 mRNA, complete cds Length = 3036 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 574 cgcttgctctccctgtcctcgctgtgcatcatgtccaggaaat 616 ||||||||||||||||||||||| ||||| | |||||||||| Sbjct: 2340 cgcttgctctccctgtcctcgctatgcataagatccaggaaat 2298
>gb|BT005012.1| Arabidopsis thaliana clone U50601 unknown protein (At1g18900) mRNA, complete cds Length = 2614 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 574 cgcttgctctccctgtcctcgctgtgcatcatgtccaggaaat 616 ||||||||||||||||||||||| ||||| | |||||||||| Sbjct: 2141 cgcttgctctccctgtcctcgctatgcataagatccaggaaat 2099
>gb|AC068602.2|AC068602 Genomic sequence for Arabidopsis thaliana BAC F14D16 from chromosome I, complete sequence Length = 87508 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 574 cgcttgctctccctgtcctcgctgtgcatcatgtccaggaaat 616 ||||||||||||||||||||||| ||||| | |||||||||| Sbjct: 6787 cgcttgctctccctgtcctcgctatgcataagatccaggaaat 6745
>dbj|AK117464.1| Arabidopsis thaliana At1g18900 mRNA for unknown protein, complete cds, clone: RAFL17-06-O22 Length = 3034 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 574 cgcttgctctccctgtcctcgctgtgcatcatgtccaggaaat 616 ||||||||||||||||||||||| ||||| | |||||||||| Sbjct: 2340 cgcttgctctccctgtcctcgctatgcataagatccaggaaat 2298
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 647 cgggctcggcgtcgggcaggtagagc 672 ||||||||||| |||||||||||||| Sbjct: 2178351 cgggctcggcgccgggcaggtagagc 2178376
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 641 cgccgccgggctcggcgtcgggcagg 666 ||||||||||||||||||| |||||| Sbjct: 144383 cgccgccgggctcggcgtccggcagg 144408
>gb|AF006000.1|AF006000 Bordetella pertussis D-3-phosphoglycerate dehydrogenase homolog (serA) and Brg1 (brg1) genes, complete cds Length = 10967 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 641 cgccgccgggctcggcgtcgggcagg 666 ||||||||||||||||||| |||||| Sbjct: 10656 cgccgccgggctcggcgtccggcagg 10631
>ref|NM_106133.1| Arabidopsis thaliana ATP binding / damaged DNA binding AT1G74750 mRNA, complete cds Length = 2568 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 574 cgcttgctctccctgtcctcgctgtgcat 602 ||||||||||| |||||||| |||||||| Sbjct: 2126 cgcttgctctctctgtcctcactgtgcat 2098
>ref|NM_187518.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2871 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 2805 agagggcggtgacggcggtgc 2825
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gccggtgttgccgcgcgcggc 227 ||||||||||||||||||||| Sbjct: 1117240 gccggtgttgccgcgcgcggc 1117220
>ref|NM_191237.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2997 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 2931 agagggcggtgacggcggtgc 2951
>gb|AY123045.1| Erwinia pyrifoliae strain Ep1/96 plasmid pEP36, complete sequence Length = 35904 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 655 gcgtcgggcaggtagagcagg 675 ||||||||||||||||||||| Sbjct: 9591 gcgtcgggcaggtagagcagg 9571
>gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015G17, complete sequence Length = 158173 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ggcggtgacggcggtgccctc 416 ||||||||||||||||||||| Sbjct: 53451 ggcggtgacggcggtgccctc 53471
>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09, complete sequence Length = 156776 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 150464 agagggcggtgacggcggtgc 150444
>gb|AC135919.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0014F09, complete sequence Length = 151345 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 46105 agagggcggtgacggcggtgc 46085
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ggcggtgacggcggtgccctc 416 ||||||||||||||||||||| Sbjct: 22295367 ggcggtgacggcggtgccctc 22295347 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 8586849 agagggcggtgacggcggtgc 8586869 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 21208414 gagggcggtgacggcggtgc 21208433
>emb|AL353790.15| Human DNA sequence from clone RP11-337N19 on chromosome 10 Contains an S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC) pseudogene, complete sequence Length = 119555 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 gaggtggaggttgatgagcca 443 ||||||||||||||||||||| Sbjct: 66136 gaggtggaggttgatgagcca 66116
>gb|AY255829.1| Erwinia sp. Ejp 556 plasmid pEJ30, complete sequence Length = 29593 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 655 gcgtcgggcaggtagagcagg 675 ||||||||||||||||||||| Sbjct: 9564 gcgtcgggcaggtagagcagg 9544
>emb|X62843.1|HPVT13DNA Human papilloma virus type 13 DNA Length = 7880 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgctc 582 ||||||||||||||||||||| Sbjct: 108 tccattatgccccgcttgctc 88
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 651 ctcggcgtcgggcaggtagag 671 ||||||||||||||||||||| Sbjct: 7821 ctcggcgtcgggcaggtagag 7841
>emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on chromosome 11 Contains a prohibitin (Phb) pseudogene and a novel gene, complete sequence Length = 213383 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 128 agagctagagcagatgcatgcgctc 152 ||||||||||||||| ||||||||| Sbjct: 66010 agagctagagcagattcatgcgctc 65986
>gb|AC078903.11| Homo sapiens chromosome 17, clone RP11-1084K4, complete sequence Length = 95359 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 291 ggtgaccctgctcctcctccc 311 ||||||||||||||||||||| Sbjct: 53897 ggtgaccctgctcctcctccc 53877
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 640 tcgccgccgggctcggcgtcg 660 ||||||||||||||||||||| Sbjct: 1636888 tcgccgccgggctcggcgtcg 1636868
>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02, complete sequence Length = 137327 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 67821 agagggcggtgacggcggtgc 67841
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 13085623 agagggcggtgacggcggtgc 13085603
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 11824824 agagggcggtgacggcggtgc 11824804 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtg 411 |||||||||||||||||||| Sbjct: 26249801 agagggcggtgacggcggtg 26249782
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ggcggtgacggcggtgccctc 416 ||||||||||||||||||||| Sbjct: 22288396 ggcggtgacggcggtgccctc 22288376 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 8584684 agagggcggtgacggcggtgc 8584704 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 21201443 gagggcggtgacggcggtgc 21201462
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 31458439 agagggcggtgacggcggtgc 31458459
>dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046E05 Length = 162776 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 52503 agagggcggtgacggcggtgc 52523
>gb|DQ344807.1| Human papillomavirus type 13, complete genome Length = 7880 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgctc 582 ||||||||||||||||||||| Sbjct: 108 tccattatgccccgcttgctc 88
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 3950 agagggcggtgacggcggtgc 3930
>dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077F02 Length = 172442 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtgc 412 ||||||||||||||||||||| Sbjct: 159920 agagggcggtgacggcggtgc 159900
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence Length = 115721 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 574 cgcttgctctccctgtcctcgctgtgcat 602 ||||||||||| |||||||| |||||||| Sbjct: 86105 cgcttgctctctctgtcctcactgtgcat 86133
>emb|AL356021.4|CNS05TDB Human chromosome 14 DNA sequence BAC R-783L4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 184656 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 297 cctgctcctcctcccccagcc 317 ||||||||||||||||||||| Sbjct: 88811 cctgctcctcctcccccagcc 88791
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ggcggtgacggcggtgccctc 416 ||||||||||||||||||||| Sbjct: 251708 ggcggtgacggcggtgccctc 251688
>gb|AF020905.1| Common chimpanzee papillomavirus 1, complete genome Length = 7889 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgctc 582 ||||||||||||||||||||| Sbjct: 105 tccattatgccccgcttgctc 85
>ref|XM_475751.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2913 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtg 411 |||||||||||||||||||| Sbjct: 2862 agagggcggtgacggcggtg 2881
>ref|XM_463050.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2742 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 2677 gagggcggtgacggcggtgc 2696
>gb|AC169703.1| Rhesus Macaque BAC CH250-14E24 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 161972 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gtgaccctgctcctcctccc 311 |||||||||||||||||||| Sbjct: 158476 gtgaccctgctcctcctccc 158495
>gb|AC148880.2| Chlamydomonas reinhardtii clone cr-40F11, complete sequence Length = 56458 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggttgtgcagccactggctg 180 |||||||||||||||||||| Sbjct: 12756 ggttgtgcagccactggctg 12737
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 agagggcggtgacggcggtg 411 |||||||||||||||||||| Sbjct: 100849 agagggcggtgacggcggtg 100830
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 64329 gagggcggtgacggcggtgc 64348
>gb|AC113287.8| Mus musculus chromosome 3, clone RP23-412L13, complete sequence Length = 214444 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 agacatgaggtggaggttga 436 |||||||||||||||||||| Sbjct: 178879 agacatgaggtggaggttga 178898
>emb|X62844.1|PCPVT1DNA Pygmy Chimpanzee papilloma virus type 1 DNA Length = 7902 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgct 581 |||||||||||||||||||| Sbjct: 108 tccattatgccccgcttgct 89
>emb|AL662906.4| Human DNA sequence from clone RP11-111I12 on chromosome 1 Contains a novel gene, complete sequence Length = 134028 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ttcctagctgatgatgataa 85 |||||||||||||||||||| Sbjct: 41818 ttcctagctgatgatgataa 41799
>emb|AL450328.6| Human DNA sequence from clone RP11-193H22 on chromosome 6, complete sequence Length = 119389 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 105435 cctgctcctcctcccccagc 105454
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgaagcagccggtgttgccg 219 |||||||||||||||||||| Sbjct: 4382508 cgaagcagccggtgttgccg 4382489
>emb|AL133270.24| Human DNA sequence from clone RP4-810F7 on chromosome 6 Contains a ferritin pseudogene, complete sequence Length = 87789 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgatgagccagtaggaggag 453 |||||||||||||||||||| Sbjct: 36338 tgatgagccagtaggaggag 36319
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 641 cgccgccgggctcggcgtcgggca 664 ||||||||||||||||||| |||| Sbjct: 174108 cgccgccgggctcggcgtccggca 174085
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 635 cgttctcgccgccgggctcg 654 |||||||||||||||||||| Sbjct: 168982 cgttctcgccgccgggctcg 169001
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 640 tcgccgccgggctcggcgtc 659 |||||||||||||||||||| Sbjct: 230110 tcgccgccgggctcggcgtc 230091
>emb|AJ237815.1|PAD237815 Porcine adenovirus serotype 3 complete genome, strain IAF Length = 34094 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcgatggactgccggacgag 281 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>emb|CR611951.1| full-length cDNA clone CS0DC010YH14 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 802 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 412 cctgctcctcctcccccagc 431
>emb|CR593925.1| full-length cDNA clone CS0DC014YE07 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 802 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 412 cctgctcctcctcccccagc 431
>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179854 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ttattcctagctgatgatga 82 |||||||||||||||||||| Sbjct: 78919 ttattcctagctgatgatga 78938
>gb|AC009470.4| Homo sapiens BAC clone RP11-125K7 from 11, complete sequence Length = 162511 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 92320 cctgctcctcctcccccagc 92301
>ref|XM_678917.1| PREDICTED: Danio rerio similar to regulator of G-protein signalling 18 (LOC556179), mRNA Length = 933 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cagcagcttctcgatggact 271 |||||||||||||||||||| Sbjct: 738 cagcagcttctcgatggact 719
>gb|DQ388430.1| Homo sapiens fibroblast growth factor (acidic) intracellular binding protein (FIBP) gene, complete cds Length = 8330 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 5768 cctgctcctcctcccccagc 5787
>ref|XM_691473.1| PREDICTED: Danio rerio similar to AT rich interactive domain 1A (Swi1 like) (LOC568161), mRNA Length = 7839 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 200 cctgctcctcctcccccagc 181
>gb|AC114625.11| Mus musculus chromosome 3, clone RP24-107N14, complete sequence Length = 160025 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 agacatgaggtggaggttga 436 |||||||||||||||||||| Sbjct: 10384 agacatgaggtggaggttga 10403
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtg 411 |||||||||||||||||||| Sbjct: 17996142 agagggcggtgacggcggtg 17996161
>gb|AF250392.1|AF250392 Homo sapiens aFGF intracellular binding protein (FIBP) gene, complete cds Length = 5107 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 4290 cctgctcctcctcccccagc 4309
>ref|XM_576828.1| PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501417), mRNA Length = 928 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 gcttgctctccctgtcctcg 594 |||||||||||||||||||| Sbjct: 29 gcttgctctccctgtcctcg 48
>ref|XM_231339.3| PREDICTED: Rattus norvegicus similar to Integrin alpha-6 precursor (VLA-6) (CD49f) (LOC312014), mRNA Length = 969 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 gcttgctctccctgtcctcg 594 |||||||||||||||||||| Sbjct: 29 gcttgctctccctgtcctcg 48
>ref|XM_576709.1| PREDICTED: Rattus norvegicus hypothetical gene supported by BC059164 (LOC501296), mRNA Length = 1247 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 gcttgctctccctgtcctcg 594 |||||||||||||||||||| Sbjct: 1096 gcttgctctccctgtcctcg 1115
>gb|AC067956.3| Homo sapiens BAC clone RP11-140F14 from 2, complete sequence Length = 171708 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 agacatgaggtggaggttgatgag 440 |||||||||||||| ||||||||| Sbjct: 9903 agacatgaggtggatgttgatgag 9926
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gcgctcgacgtaggggttgt 166 |||||||||||||||||||| Sbjct: 76183 gcgctcgacgtaggggttgt 76164
>gb|AF247039.1|AF247039 Porcine adenovirus 3 171R (E1A), 202R (E1B-1), 474R (E1B-2), 288R (288R), 198R (pIX), 163R* (163R*), 162R (162R), 97R (97R) and 184R (184R) genes, complete cds; and IVa2 (IVa2) gene, partial cds Length = 4769 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcgatggactgccggacgag 281 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 641 cgccgccgggctcggcgtcg 660 |||||||||||||||||||| Sbjct: 673818 cgccgccgggctcggcgtcg 673837
>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F04 Length = 139563 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 agagggcggtgacggcggtg 411 |||||||||||||||||||| Sbjct: 57736 agagggcggtgacggcggtg 57755
>gb|AY603101.1| Crithidia fasciculata trypanothione synthetase (TryS) gene, complete cds Length = 1959 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 aggagctcttctccctgacg 468 |||||||||||||||||||| Sbjct: 1748 aggagctcttctccctgacg 1767
>gb|AF083132.1|AF083132 Porcine adenovirus 3 strain 6618, complete genome Length = 34094 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcgatggactgccggacgag 281 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>gb|U40822.1|HPU40822 Human papillomavirus type 74 E6 protein (E6), E7 protein (E7), and L1 protein (L1) genes, complete cds Length = 3891 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgct 581 |||||||||||||||||||| Sbjct: 2952 tccattatgccccgcttgct 2933
>gb|AF006615.1|AF006615 Crithidia fasciculata trypanothione synthetase (Cf-TS) gene, complete cds Length = 3305 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 aggagctcttctccctgacg 468 |||||||||||||||||||| Sbjct: 2761 aggagctcttctccctgacg 2780
>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157771 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 153935 gagggcggtgacggcggtgc 153954
>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134082 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagggcggtgacggcggtgc 412 |||||||||||||||||||| Sbjct: 73335 gagggcggtgacggcggtgc 73354
>gb|U31791.1|HPU31791 Human papillomavirus type 55, complete genome Length = 7822 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgct 581 |||||||||||||||||||| Sbjct: 106 tccattatgccccgcttgct 87
>gb|U31788.1|HPU31788 Human papillomavirus type 44, complete genome Length = 7833 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgct 581 |||||||||||||||||||| Sbjct: 109 tccattatgccccgcttgct 90
>gb|M27023.1|PPH44E6A Human papillomavirus (HPV44) early protein (E6) gene, complete cds Length = 590 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tccattatgccccgcttgct 581 |||||||||||||||||||| Sbjct: 107 tccattatgccccgcttgct 88
>dbj|AB026117.1| Porcine adenovirus 3 DNA, complete genome Length = 34094 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 tcgatggactgccggacgag 281 |||||||||||||||||||| Sbjct: 666 tcgatggactgccggacgag 685
>dbj|AP001201.7| Homo sapiens genomic DNA, chromosome 11, clone:RP11-821O7, complete sequence Length = 182547 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cctgctcctcctcccccagc 316 |||||||||||||||||||| Sbjct: 19880 cctgctcctcctcccccagc 19861 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,262,755 Number of Sequences: 3902068 Number of extensions: 5262755 Number of successful extensions: 121813 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120310 Number of HSP's gapped (non-prelim): 1496 length of query: 686 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 663 effective length of database: 17,143,297,704 effective search space: 11366006377752 effective search space used: 11366006377752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)