Clone Name | rbasd11b07 |
---|---|
Clone Library Name | barley_pub |
>gb|DQ118105.1| Hordeum vulgare plastid division regulator MinE mRNA, complete cds; nuclear gene for plastid product Length = 805 Score = 864 bits (436), Expect = 0.0 Identities = 436/436 (100%) Strand = Plus / Minus Query: 93 cccgaggagtcccaaggggcgataaaggaacacaacagagcgcactaggccaaggaatca 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 805 cccgaggagtcccaaggggcgataaaggaacacaacagagcgcactaggccaaggaatca 746 Query: 153 gtggttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctcc 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 745 gtggttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctcc 686 Query: 213 agtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggta 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 685 agtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggta 626 Query: 273 ctcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatc 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 ctcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatc 566 Query: 333 ggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcagatagcgc 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 ggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcagatagcgc 506 Query: 393 ctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacctgtcgga 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 ctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacctgtcgga 446 Query: 453 gaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatgtatggt 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 gaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatgtatggt 386 Query: 513 tggtgctgggaagatt 528 |||||||||||||||| Sbjct: 385 tggtgctgggaagatt 370
>gb|AY496951.1| Oryza sativa (japonica cultivar-group) putative cell division topological specificity factor (minE) mRNA, complete cds Length = 1035 Score = 258 bits (130), Expect = 2e-65 Identities = 274/322 (85%) Strand = Plus / Minus Query: 207 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 266 ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 729 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 670 Query: 267 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 326 ||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 669 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 610 Query: 327 agcatcggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcaga 386 |||||| || ||||||||||| || || || || || ||||| ||||| || |||||||| Sbjct: 609 agcatcagttgagatatccacctggacgttgtctcgtgattctatctccacgaattcaga 550 Query: 387 tagcgcctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacct 446 || |||||||| | | | || || ||||| |||||||| |||||||| || || ||||| Sbjct: 549 gagtgcctcaacgatgttctcaacaatcttcttctttgcctcgtcactcacttcacacct 490 Query: 447 gtcggagaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatg 506 ||||||||| || |||||||| |||||||||||||| || ||||||| | |||||| | Sbjct: 489 gtcggagaacagtatcatcttaagcctctgctttgcgatgtttgcattagagttctcctt 430 Query: 507 tatggttggtgctgggaagatt 528 ||| ||||||||||||||||| Sbjct: 429 aatgcttggtgctgggaagatt 408
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 258 bits (130), Expect = 2e-65 Identities = 274/322 (85%) Strand = Plus / Plus Query: 207 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 266 ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 18954484 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 18954543 Query: 267 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 326 ||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 18954544 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 18954603 Query: 327 agcatcggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcaga 386 |||||| || ||||||||||| || || || || || ||||| ||||| || |||||||| Sbjct: 18954604 agcatcagttgagatatccacctggacgttgtctcgtgattctatctccacgaattcaga 18954663 Query: 387 tagcgcctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacct 446 || |||||||| | | | || || ||||| |||||||| |||||||| || || ||||| Sbjct: 18954664 gagtgcctcaacgatgttctcaacaatcttcttctttgcctcgtcactcacttcacacct 18954723 Query: 447 gtcggagaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatg 506 ||||||||| || |||||||| |||||||||||||| || ||||||| | |||||| | Sbjct: 18954724 gtcggagaacagtatcatcttaagcctctgctttgcgatgtttgcattagagttctcctt 18954783 Query: 507 tatggttggtgctgggaagatt 528 ||| ||||||||||||||||| Sbjct: 18954784 aatgcttggtgctgggaagatt 18954805
>dbj|AK070044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038J16, full insert sequence Length = 1003 Score = 258 bits (130), Expect = 2e-65 Identities = 274/322 (85%) Strand = Plus / Minus Query: 207 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 266 ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 719 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 660 Query: 267 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 326 ||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 659 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 600 Query: 327 agcatcggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcaga 386 |||||| || ||||||||||| || || || || || ||||| ||||| || |||||||| Sbjct: 599 agcatcagttgagatatccacctggacgttgtctcgtgattctatctccacgaattcaga 540 Query: 387 tagcgcctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacct 446 || |||||||| | | | || || ||||| |||||||| |||||||| || || ||||| Sbjct: 539 gagtgcctcaacgatgttctcaacaatcttcttctttgcctcgtcactcacttcacacct 480 Query: 447 gtcggagaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatg 506 ||||||||| || |||||||| |||||||||||||| || ||||||| | |||||| | Sbjct: 479 gtcggagaacagtatcatcttaagcctctgctttgcgatgtttgcattagagttctcctt 420 Query: 507 tatggttggtgctgggaagatt 528 ||| ||||||||||||||||| Sbjct: 419 aatgcttggtgctgggaagatt 398
>dbj|AK058897.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-H02, full insert sequence Length = 997 Score = 258 bits (130), Expect = 2e-65 Identities = 274/322 (85%) Strand = Plus / Minus Query: 207 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 266 ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 691 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 632 Query: 267 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 326 ||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 631 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 572 Query: 327 agcatcggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcaga 386 |||||| || ||||||||||| || || || || || ||||| ||||| || |||||||| Sbjct: 571 agcatcagttgagatatccacctggacgttgtctcgtgattctatctccacgaattcaga 512 Query: 387 tagcgcctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacct 446 || |||||||| | | | || || ||||| |||||||| |||||||| || || ||||| Sbjct: 511 gagtgcctcaacgatgttctcaacaatcttcttctttgcctcgtcactcacttcacacct 452 Query: 447 gtcggagaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatg 506 ||||||||| || |||||||| |||||||||||||| || ||||||| | |||||| | Sbjct: 451 gtcggagaacagtatcatcttaagcctctgctttgcgatgtttgcattagagttctcctt 392 Query: 507 tatggttggtgctgggaagatt 528 ||| ||||||||||||||||| Sbjct: 391 aatgcttggtgctgggaagatt 370
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 258 bits (130), Expect = 2e-65 Identities = 274/322 (85%) Strand = Plus / Plus Query: 207 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 266 ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 18880711 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 18880770 Query: 267 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 326 ||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 18880771 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 18880830 Query: 327 agcatcggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcaga 386 |||||| || ||||||||||| || || || || || ||||| ||||| || |||||||| Sbjct: 18880831 agcatcagttgagatatccacctggacgttgtctcgtgattctatctccacgaattcaga 18880890 Query: 387 tagcgcctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacct 446 || |||||||| | | | || || ||||| |||||||| |||||||| || || ||||| Sbjct: 18880891 gagtgcctcaacgatgttctcaacaatcttcttctttgcctcgtcactcacttcacacct 18880950 Query: 447 gtcggagaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatg 506 ||||||||| || |||||||| |||||||||||||| || ||||||| | |||||| | Sbjct: 18880951 gtcggagaacagtatcatcttaagcctctgctttgcgatgtttgcattagagttctcctt 18881010 Query: 507 tatggttggtgctgggaagatt 528 ||| ||||||||||||||||| Sbjct: 18881011 aatgcttggtgctgggaagatt 18881032
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 258 bits (130), Expect = 2e-65 Identities = 274/322 (85%) Strand = Plus / Minus Query: 207 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 266 ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 15895 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 15836 Query: 267 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 326 ||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 15835 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 15776 Query: 327 agcatcggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcaga 386 |||||| || ||||||||||| || || || || || ||||| ||||| || |||||||| Sbjct: 15775 agcatcagttgagatatccacctggacgttgtctcgtgattctatctccacgaattcaga 15716 Query: 387 tagcgcctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacct 446 || |||||||| | | | || || ||||| |||||||| |||||||| || || ||||| Sbjct: 15715 gagtgcctcaacgatgttctcaacaatcttcttctttgcctcgtcactcacttcacacct 15656 Query: 447 gtcggagaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatg 506 ||||||||| || |||||||| |||||||||||||| || ||||||| | |||||| | Sbjct: 15655 gtcggagaacagtatcatcttaagcctctgctttgcgatgtttgcattagagttctcctt 15596 Query: 507 tatggttggtgctgggaagatt 528 ||| ||||||||||||||||| Sbjct: 15595 aatgcttggtgctgggaagatt 15574
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 258 bits (130), Expect = 2e-65 Identities = 274/322 (85%) Strand = Plus / Plus Query: 207 ttctccagtgtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattc 266 ||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 50601 ttctccagtgtccttgaagtcaacacctacgatcttccctctgtactgctcttcagattc 50660 Query: 267 ctggtactcgggcttcacacggcgcactggaacagttacagaatacacagtgccaaggcc 326 ||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||| Sbjct: 50661 ctggtactcaggcttgacacggcgaacaggaacggtcacagaatatactgtgccaaggcc 50720 Query: 327 agcatcggtcgagatatccacttgtacattatcacgcgattcaatctcgacaaattcaga 386 |||||| || ||||||||||| || || || || || ||||| ||||| || |||||||| Sbjct: 50721 agcatcagttgagatatccacctggacgttgtctcgtgattctatctccacgaattcaga 50780 Query: 387 tagcgcctcaacaacgctttccactatctttttctttgcttcgtcactgacctcgcacct 446 || |||||||| | | | || || ||||| |||||||| |||||||| || || ||||| Sbjct: 50781 gagtgcctcaacgatgttctcaacaatcttcttctttgcctcgtcactcacttcacacct 50840 Query: 447 gtcggagaatagaatcatcttcagcctctgctttgcaatacttgcatttgtgttctcatg 506 ||||||||| || |||||||| |||||||||||||| || ||||||| | |||||| | Sbjct: 50841 gtcggagaacagtatcatcttaagcctctgctttgcgatgtttgcattagagttctcctt 50900 Query: 507 tatggttggtgctgggaagatt 528 ||| ||||||||||||||||| Sbjct: 50901 aatgcttggtgctgggaagatt 50922
>dbj|AB127981.1| Zea mays mRNA for MinE, complete cds Length = 974 Score = 252 bits (127), Expect = 1e-63 Identities = 277/327 (84%) Strand = Plus / Minus Query: 156 gttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctccagt 215 ||||||||| || ||| |||| || || ||||| ||||| | || || ||||||||||| Sbjct: 744 gttctcattgggtacaaagaagtcaaaggtgacgtcaacgctccctgaggattctccagt 685 Query: 216 gtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggtactc 275 |||||||||||| ||||| || ||||| |||| ||||||||||||||||||||||||||| Sbjct: 684 gtccttgaagtcgacaccgacaattttccctctgtactgctcttcagattcctggtactc 625 Query: 276 gggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatcggt 335 ||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||| || Sbjct: 624 tggcttcacacggcgcacaggaactgacacagagtacacggtgccaaggccagcatcagt 565 Query: 336 cgagatatccacttgtacattatcacgcgattcaatctcgacaaattcagatagcgcctc 395 |||||||||||||| || ||||| | ||||| ||||| ||||| ||||| || ||||| Sbjct: 564 tgagatatccacttggacgttatcccttgattctatctcaacaaactcagacagtgcctc 505 Query: 396 aacaacgctttccactatctttttctttgcttcgtcactgacctcgcacctgtcggagaa 455 || | | | ||||| |||||||||||||| || |||||||| || |||||||||||||| Sbjct: 504 aatgatgttctccacgatctttttctttgcctcatcactgacttcacacctgtcggagaa 445 Query: 456 tagaatcatcttcagcctctgctttgc 482 || |||||||| |||||||| ||||| Sbjct: 444 caggatcatcttaagcctctgttttgc 418
>gb|AY109856.1| Zea mays CL40167_1 mRNA sequence Length = 803 Score = 222 bits (112), Expect = 9e-55 Identities = 272/327 (83%) Strand = Plus / Minus Query: 156 gttctcattcgggacatagaaatcgaatgtgacatcaacattaccagacgattctccagt 215 ||||||||| || ||| |||| || || ||||| ||||| | || || ||||||||||| Sbjct: 573 gttctcattgggtacaaagaagtcaaaggtgacgtcaacgctccctgaggattctccagt 514 Query: 216 gtccttgaagtcaacaccaacgatttttcctccgtactgctcttcagattcctggtactc 275 |||||||||||| ||||| || ||||| |||| ||||||||||||||||||||||||||| Sbjct: 513 gtccttgaagtcgacaccgacaattttccctctgtactgctcttcagattcctggtactc 454 Query: 276 gggcttcacacggcgcactggaacagttacagaatacacagtgccaaggccagcatcggt 335 ||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||| || Sbjct: 453 tggcttcacacggcgcacaggaactgacacagagtacacggtgccaaggccagcatcagt 394 Query: 336 cgagatatccacttgtacattatcacgcgattcaatctcgacaaattcagatagcgcctc 395 |||||||||||||| || ||||| | ||||| ||||| ||||| ||||| || ||||| Sbjct: 393 tgagatatccacttggacgttatcccttgattctatctcaacaaactcagacagtgcctc 334 Query: 396 aacaacgctttccactatctttttctttgcttcgtcactgacctcgcacctgtcggagaa 455 || | | | ||||| ||| |||||| || |||||||| || |||||||||||||| Sbjct: 333 aatgatgttctccacgatcnnnnnctttgcctcatcactgacttcacacctgtcggagaa 274 Query: 456 tagaatcatcttcagcctctgctttgc 482 || |||||||| |||||||| ||||| Sbjct: 273 caggatcatcttaagcctctgttttgc 247
>ref|NM_105606.2| Arabidopsis thaliana unknown protein AT1G69390 mRNA, complete cds Length = 954 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 424 gcttcgtcactgacctcgcacctgtcggagaatagaatcatcttcagcctctgctttgca 483 ||||||||||| || || |||||||||||||| || |||||||| |||| |||||||||| Sbjct: 504 gcttcgtcactaacatcacacctgtcggagaagaggatcatcttgagccgctgctttgca 445 Query: 484 atacttgc 491 || ||||| Sbjct: 444 attcttgc 437
>gb|AC073178.9|AC073178 Arabidopsis thaliana chromosome 1 BAC F10D13 genomic sequence, complete sequence Length = 107214 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 424 gcttcgtcactgacctcgcacctgtcggagaatagaatcatcttcagcctctgctttgca 483 ||||||||||| || || |||||||||||||| || |||||||| |||| |||||||||| Sbjct: 29352 gcttcgtcactaacatcacacctgtcggagaagaggatcatcttgagccgctgctttgca 29293 Query: 484 atacttgc 491 || ||||| Sbjct: 29292 attcttgc 29285
>gb|AC018364.5|AC018364 Arabidopsis thaliana chromosome 1 BAC F23O10 genomic sequence, complete sequence Length = 93802 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 424 gcttcgtcactgacctcgcacctgtcggagaatagaatcatcttcagcctctgctttgca 483 ||||||||||| || || |||||||||||||| || |||||||| |||| |||||||||| Sbjct: 10877 gcttcgtcactaacatcacacctgtcggagaagaggatcatcttgagccgctgctttgca 10936 Query: 484 atacttgc 491 || ||||| Sbjct: 10937 attcttgc 10944
>gb|BT004467.1| Arabidopsis thaliana clone U20860 unknown protein (At1g69390) mRNA, complete cds Length = 721 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 424 gcttcgtcactgacctcgcacctgtcggagaatagaatcatcttcagcctctgctttgca 483 ||||||||||| || || |||||||||||||| || |||||||| |||| |||||||||| Sbjct: 437 gcttcgtcactaacatcacacctgtcggagaagaggatcatcttgagccgctgctttgca 378 Query: 484 atacttgc 491 || ||||| Sbjct: 377 attcttgc 370
>gb|AY088828.1| Arabidopsis thaliana clone 96657 mRNA, complete sequence Length = 926 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 424 gcttcgtcactgacctcgcacctgtcggagaatagaatcatcttcagcctctgctttgca 483 ||||||||||| || || |||||||||||||| || |||||||| |||| |||||||||| Sbjct: 504 gcttcgtcactaacatcacacctgtcggagaagaggatcatcttgagccgctgctttgca 445 Query: 484 atacttgc 491 || ||||| Sbjct: 444 attcttgc 437
>gb|BT002897.1| Arabidopsis thaliana clone RAFL15-27-J23 (R20860) unknown protein (At1g69390) mRNA, complete cds Length = 939 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 424 gcttcgtcactgacctcgcacctgtcggagaatagaatcatcttcagcctctgctttgca 483 ||||||||||| || || |||||||||||||| || |||||||| |||| |||||||||| Sbjct: 502 gcttcgtcactaacatcacacctgtcggagaagaggatcatcttgagccgctgctttgca 443 Query: 484 atacttgc 491 || ||||| Sbjct: 442 attcttgc 435
>dbj|AB046117.1| Arabidopsis thaliana AtMinE mRNA, complete cds Length = 952 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 424 gcttcgtcactgacctcgcacctgtcggagaatagaatcatcttcagcctctgctttgca 483 ||||||||||| || || |||||||||||||| || |||||||| |||| |||||||||| Sbjct: 480 gcttcgtcactaacatcacacctgtcggagaagaggatcatcttgagccgctgctttgca 421 Query: 484 atacttgc 491 || ||||| Sbjct: 420 attcttgc 413
>ref|XM_519968.1| PREDICTED: Pan troglodytes thyroglobulin (LOC464408), mRNA Length = 2403 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 1277 acacagtgccaaggccagcatc 1298
>gb|AF169658.1|HSTHRG05 Homo sapiens thyroglobulin gene, exon 29 Length = 840 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 448 acacagtgccaaggccagcatc 469
>ref|NM_003235.4| Homo sapiens thyroglobulin (TG), mRNA Length = 8453 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 5554 acacagtgccaaggccagcatc 5575
>emb|X05615.1|HSTHYRR Human mRNA for thyroglobulin Length = 8448 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 5551 acacagtgccaaggccagcatc 5572
>gb|AF305872.2| Homo sapiens chromosome 8 clone CTD-2182N23 map 8q24.3 , complete sequence Length = 134215 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 22138 acacagtgccaaggccagcatc 22159
>gb|AC093534.2| Homo sapiens chromosome 5 clone RP11-492L8, complete sequence Length = 168609 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 505 tgtatggttggtgctgggaaga 526 |||||||||||||||||||||| Sbjct: 81638 tgtatggttggtgctgggaaga 81659
>gb|S80793.1| Tg=thyroglobulin [human, congenital goiter patient HSN, thyroid tissue, mRNA Partial Mutant, 186 nt] Length = 186 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 47 acacagtgccaaggccagcatc 68
>gb|U93033.2|U93033 Homo sapiens thyroglobulin (TG) mRNA, complete cds Length = 8427 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 5513 acacagtgccaaggccagcatc 5534
>dbj|AB209159.1| Homo sapiens mRNA for Thyroglobulin precursor variant protein Length = 5065 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 311 acacagtgccaaggccagcatc 332 |||||||||||||||||||||| Sbjct: 2168 acacagtgccaaggccagcatc 2189
>ref|XM_989617.1| PREDICTED: Mus musculus zinc finger protein 711 (Zfp711), mRNA Length = 2519 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 atcatcttcagcctctgcttt 480 ||||||||||||||||||||| Sbjct: 1174 atcatcttcagcctctgcttt 1154
>ref|XM_898101.2| PREDICTED: Mus musculus zinc finger protein 711, transcript variant 3 (Zfp711), mRNA Length = 2519 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 atcatcttcagcctctgcttt 480 ||||||||||||||||||||| Sbjct: 1174 atcatcttcagcctctgcttt 1154
>ref|XM_621071.3| PREDICTED: Mus musculus zinc finger protein 711, transcript variant 1 (Zfp711), mRNA Length = 2331 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 atcatcttcagcctctgcttt 480 ||||||||||||||||||||| Sbjct: 681 atcatcttcagcctctgcttt 661
>gb|DQ118106.1| Glycine max plastid division regulator MinE mRNA, complete cds; nuclear gene for plastid product Length = 849 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Minus Query: 169 acatagaaatcgaatgtgacatcaacattaccagacgattctccagtgtcctt 221 ||||||||||| ||||| ||||||||| |||||| | ||||| |||||||| Sbjct: 709 acatagaaatcaaatgtaacatcaacagaaccagaagtctctccggtgtcctt 657
>dbj|AK038956.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230078I01 product:weakly similar to ZINC FINGER TRANSCRIPTION FACTOR [Homo sapiens], full insert sequence Length = 2522 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 atcatcttcagcctctgcttt 480 ||||||||||||||||||||| Sbjct: 1176 atcatcttcagcctctgcttt 1156
>ref|XM_228451.3| PREDICTED: Rattus norvegicus similar to ZNF6 protein (LOC302327), mRNA Length = 4576 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 atcatcttcagcctctgcttt 480 ||||||||||||||||||||| Sbjct: 1417 atcatcttcagcctctgcttt 1397
>emb|AL831771.5| Mouse DNA sequence from clone RP23-336F13 on chromosome X, complete sequence Length = 207974 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 460 atcatcttcagcctctgcttt 480 ||||||||||||||||||||| Sbjct: 91801 atcatcttcagcctctgcttt 91781
>gb|U20939.1|YSCL9576 Saccharomyces cerevisiae chromosome XII cosmid 9576 Length = 35805 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 aatgtgacatcaacattacca 201 ||||||||||||||||||||| Sbjct: 32668 aatgtgacatcaacattacca 32648
>gb|M74589.1|YSCSEN1A Saccharomyces cerevisiae SEN1 mRNA Length = 6915 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 aatgtgacatcaacattacca 201 ||||||||||||||||||||| Sbjct: 3695 aatgtgacatcaacattacca 3675
>gb|AE008443.1| Streptococcus pneumoniae R6 section 59 of 184 of the complete genome Length = 11402 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaagaaaagcctagatattt 63 |||||||||||||||||||| Sbjct: 211 aaagaaaagcctagatattt 192
>gb|AC122556.15| Mus musculus chromosome 12, clone RP24-352D3, complete sequence Length = 167088 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 atacacagtgccaaggccag 328 |||||||||||||||||||| Sbjct: 140872 atacacagtgccaaggccag 140853
>emb|CT009556.7| Mouse DNA sequence from clone RP23-87H19 on chromosome 14, complete sequence Length = 227368 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 catttgtgttctcatgtatg 510 |||||||||||||||||||| Sbjct: 128363 catttgtgttctcatgtatg 128382
>gb|AC073071.2| Homo sapiens BAC clone RP11-238I13 from 7, complete sequence Length = 154216 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 aatacttgcatttgtgttct 502 |||||||||||||||||||| Sbjct: 107888 aatacttgcatttgtgttct 107907
>ref|XM_774892.1| PREDICTED: Strongylocentrotus purpuratus similar to leucine-rich repeat containing protein family member (104.2 kD) (5M953) (LOC574576), mRNA Length = 4137 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 atcatcttcagcctctgctt 479 |||||||||||||||||||| Sbjct: 1617 atcatcttcagcctctgctt 1636
>emb|AJ239034.1|SPN239034 Streptococcus pneumoniae mta gene for regulator of pmrA (multi-drug efflux pump) Length = 840 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaagaaaagcctagatattt 63 |||||||||||||||||||| Sbjct: 278 aaagaaaagcctagatattt 259
>emb|AL845463.7| Mouse DNA sequence from clone RP23-386K17 on chromosome 11 Contains a novel pseudogene, three novel genes and three CpG islands, complete sequence Length = 59235 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 actgctcttcagattcctgg 270 |||||||||||||||||||| Sbjct: 17848 actgctcttcagattcctgg 17867
>gb|AC103579.10| Mus Musculus Strain C57BL6/J Chromosome 14 BAC Clone RP23-145J23, Complete Sequence, complete sequence Length = 227361 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 catttgtgttctcatgtatg 510 |||||||||||||||||||| Sbjct: 119676 catttgtgttctcatgtatg 119657
>gb|AC098868.3| Homo sapiens BAC clone RP11-545H22 from 4, complete sequence Length = 124972 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aaacactgaatgaaagaaaa 51 |||||||||||||||||||| Sbjct: 110914 aaacactgaatgaaagaaaa 110933
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 tttgcaatacttgcatttgt 497 |||||||||||||||||||| Sbjct: 2383430 tttgcaatacttgcatttgt 2383411
>gb|BC003258.1| Mus musculus zinc finger protein 672, mRNA (cDNA clone MGC:7841 IMAGE:3500812), complete cds Length = 2586 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 actgctcttcagattcctgg 270 |||||||||||||||||||| Sbjct: 129 actgctcttcagattcctgg 110
>gb|AC146384.4| Pan troglodytes BAC clone RP43-126A5 from chromosome 7, complete sequence Length = 120025 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 aatacttgcatttgtgttct 502 |||||||||||||||||||| Sbjct: 23534 aatacttgcatttgtgttct 23553
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome Length = 2160842 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aaagaaaagcctagatattt 63 |||||||||||||||||||| Sbjct: 701677 aaagaaaagcctagatattt 701658
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence Length = 229073 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 aaacactgaatgaaagaaaa 51 |||||||||||||||||||| Sbjct: 144060 aaacactgaatgaaagaaaa 144041
>emb|CT574562.2| Pan troglodytes chromosome X clone PTB-067L19 map Xq28, complete sequence Length = 137502 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tatctttttctttgcttcgt 430 |||||||||||||||||||| Sbjct: 118682 tatctttttctttgcttcgt 118701
>emb|CT574567.3| Pan troglodytes chromosome X clone PTB-059K09 map Xq28, complete sequence Length = 163464 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 tatctttttctttgcttcgt 430 |||||||||||||||||||| Sbjct: 55980 tatctttttctttgcttcgt 55999
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 tttgcaatacttgcatttgt 497 |||||||||||||||||||| Sbjct: 1898006 tttgcaatacttgcatttgt 1898025
>emb|AL772407.4| Mouse DNA sequence from clone RP23-112N9 on chromosome 2, complete sequence Length = 202231 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 acgctttccactatcttttt 419 |||||||||||||||||||| Sbjct: 33591 acgctttccactatcttttt 33610 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,994,067 Number of Sequences: 3902068 Number of extensions: 4994067 Number of successful extensions: 113962 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113759 Number of HSP's gapped (non-prelim): 201 length of query: 528 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 505 effective length of database: 17,143,297,704 effective search space: 8657365340520 effective search space used: 8657365340520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)