ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475939.1| Oryza sativa (japonica cultivar-group), predic... 190 4e-45
2dbj|AK065040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 4e-45
3gb|AY112492.1| Zea mays CL15744_1 mRNA sequence 129 1e-26
4gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome... 78 4e-11
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
6gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, com... 42 2.4
7gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, compl... 42 2.4
8gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 42 2.4
9ref|XM_990171.1| PREDICTED: Mus musculus RIKEN cDNA C030017K20 g... 42 2.4
10ref|XM_001000858.1| PREDICTED: Mus musculus RIKEN cDNA C030017K2... 42 2.4
11ref|XM_989220.1| PREDICTED: Mus musculus RIKEN cDNA C030017K20 g... 42 2.4
12gb|AE005953.1| Caulobacter crescentus CB15 section 279 of 359 of... 42 2.4
13gb|AC134845.5| Mus musculus BAC clone RP24-424K5 from chromosome... 42 2.4
14dbj|AK047723.1| Mus musculus adult male corpus striatum cDNA, RI... 42 2.4
15gb|AF134372.1|AF134372 Linyphia triangularis 28S ribosomal RNA g... 42 2.4
16gb|AC133938.4| Mus musculus BAC clone RP23-399J17 from 3, comple... 42 2.4
17gb|AC166173.3| Mus musculus BAC clone RP23-101K10 from chromosom... 42 2.4
18gb|AC168310.6| Mus musculus chromosome 8, clone RP24-345M22, com... 42 2.4
19gb|AY262829.1| Mus musculus cystathionine gamma-lyase (Cys3) gen... 40 9.5
20gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome... 40 9.5
21gb|AC117211.3| Mus musculus BAC clone RP23-287M3 from 3, complet... 40 9.5
22emb|Z93242.1|HS389A20 Human DNA sequence from clone RP3-389A20 o... 40 9.5
23emb|AL162614.25| Human DNA sequence from clone RP1-220G17 on chr... 40 9.5
24gb|AC009659.5| Homo sapiens chromosome 11, clone RP11-362G8, com... 40 9.5
25dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 9.5
26dbj|AK042196.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 9.5
27gb|AC008233.3|AC008233 Drosophila melanogaster, chromosome 2L, r... 40 9.5
28dbj|AB121692.1| Mus musculus peptidylarginine deiminase gene clu... 40 9.5
29gb|AC009969.10| Homo sapiens BAC clone RP11-418G17 from 2, compl... 40 9.5
30dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.5
31gb|AF134375.1|AF134375 Uloborus plumipes 28S ribosomal RNA gene,... 40 9.5
32gb|AF134369.1|AF134369 Argiope bruennichi 28S ribosomal RNA gene... 40 9.5
33gb|AF134363.1|AF134363 Coelotes terrestris 28S ribosomal RNA gen... 40 9.5
34gb|AF134357.1|AF134357 Harpactea rubicunda 28S ribosomal RNA gen... 40 9.5
35gb|AF134354.1|AF134354 Filistata insidiatrix 28S ribosomal RNA g... 40 9.5
36gb|AE003608.5| Drosophila melanogaster chromosome 2L, section 17... 40 9.5
37gb|AC139573.4| Mus musculus BAC clone RP23-472H13 from 16, compl... 40 9.5
38emb|AL807805.7| Mouse DNA sequence from clone RP23-48K5 on chrom... 40 9.5 
>ref|XM_475939.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 816

 Score =  190 bits (96), Expect = 4e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 419 ggaactttgttggccttgcttctcccacggcttgggcttgggtgccatacggggcttcga 478
           |||||||| ||| || ||||| ||||| ||||||||||| |||||||| ||||  | |||
Sbjct: 633 ggaactttcttgaccctgcttttcccatggcttgggctttggtgccatgcgggattccga 574

                                                                       
Query: 479 gattggctgatcagggtttggtggctcatcattaatatcctggatatcatctggccgctc 538
           |||||| |||| ||||||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct: 573 gattggttgataagggtttggagggtcatcattaatgtcctgtatatcatctggccgctc 514

                                                                       
Query: 539 tcccctttgtatcatttccataacctccatatatgattttgggtgctggggcaccacagg 598
           ||||||||||||||||||||| | |||||||||||||||||||||  | |||||||||||
Sbjct: 513 tcccctttgtatcatttccatgatctccatatatgattttgggtggcgaggcaccacagg 454



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 654 gagtttgaaggtgggctaagtaaacgtcgaaatgcttcttcgat 697
           |||||||||| |||||||||||||||||||||||| || |||||
Sbjct: 317 gagtttgaagatgggctaagtaaacgtcgaaatgcctcatcgat 274
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>dbj|AK065040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H17, full
           insert sequence
          Length = 1151

 Score =  190 bits (96), Expect = 4e-45
 Identities = 159/180 (88%)
 Strand = Plus / Minus

                                                                       
Query: 419 ggaactttgttggccttgcttctcccacggcttgggcttgggtgccatacggggcttcga 478
           |||||||| ||| || ||||| ||||| ||||||||||| |||||||| ||||  | |||
Sbjct: 688 ggaactttcttgaccctgcttttcccatggcttgggctttggtgccatgcgggattccga 629

                                                                       
Query: 479 gattggctgatcagggtttggtggctcatcattaatatcctggatatcatctggccgctc 538
           |||||| |||| ||||||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct: 628 gattggttgataagggtttggagggtcatcattaatgtcctgtatatcatctggccgctc 569

                                                                       
Query: 539 tcccctttgtatcatttccataacctccatatatgattttgggtgctggggcaccacagg 598
           ||||||||||||||||||||| | |||||||||||||||||||||  | |||||||||||
Sbjct: 568 tcccctttgtatcatttccatgatctccatatatgattttgggtggcgaggcaccacagg 509



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 654 gagtttgaaggtgggctaagtaaacgtcgaaatgcttcttcgat 697
           |||||||||| |||||||||||||||||||||||| || |||||
Sbjct: 372 gagtttgaagatgggctaagtaaacgtcgaaatgcctcatcgat 329
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>gb|AY112492.1| Zea mays CL15744_1 mRNA sequence
          Length = 995

 Score =  129 bits (65), Expect = 1e-26
 Identities = 128/149 (85%)
 Strand = Plus / Minus

                                                                       
Query: 432 ccttgcttctcccacggcttgggcttgggtgccatacggggcttcgagattggctgatca 491
           |||||||| ||||| ||||| || || ||||||||||| || |  |||||||| ||||||
Sbjct: 620 ccttgcttttcccatggctttggtttcggtgccatacgaggttctgagattggttgatca 561

                                                                       
Query: 492 gggtttggtggctcatcattaatatcctggatatcatctggccgctctcccctttgtatc 551
           || ||||| || ||||| ||||||||||  ||||| ||||| ||||| ||||||||||||
Sbjct: 560 ggatttggagggtcatcgttaatatcctttatatcgtctgggcgctcacccctttgtatc 501

                                        
Query: 552 atttccataacctccatatatgattttgg 580
           |||||||| | ||||||||||||||||||
Sbjct: 500 atttccatgatctccatatatgattttgg 472
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>gb|AC098571.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B10,
             complete sequence
          Length = 127304

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                        
Query: 517   cctggatatcatctggccgctctcccctttgtatcatttccat 559
             |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89270 cctgtatatcatctggccgctctcccctttgtatcatttccat 89228



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                         
Query: 449   cttgggcttgggtgccatacggggcttcgagattggctgatcagggtttggtggctcatc 508
             ||||||||| |||||||| ||||  | ||||||||| |||| ||||||||| || |||||
Sbjct: 89401 cttgggctttggtgccatgcgggattccgagattggttgataagggtttggagggtcatc 89342

                        
Query: 509   attaatatcct 519
             |||||| ||||
Sbjct: 89341 attaatgtcct 89331



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 561   acctccatatatgattttgggtgctggggcaccacagg 598
             |||||||||||||||||||||||  | |||||||||||
Sbjct: 88602 acctccatatatgattttgggtggcgaggcaccacagg 88565
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 42/43 (97%)
 Strand = Plus / Minus

                                                           
Query: 517      cctggatatcatctggccgctctcccctttgtatcatttccat 559
                |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 28561577 cctgtatatcatctggccgctctcccctttgtatcatttccat 28561535



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                            
Query: 449      cttgggcttgggtgccatacggggcttcgagattggctgatcagggtttggtggctcatc 508
                ||||||||| |||||||| ||||  | ||||||||| |||| ||||||||| || |||||
Sbjct: 28561708 cttgggctttggtgccatgcgggattccgagattggttgataagggtttggagggtcatc 28561649

                           
Query: 509      attaatatcct 519
                |||||| ||||
Sbjct: 28561648 attaatgtcct 28561638



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 561      acctccatatatgattttgggtgctggggcaccacagg 598
                |||||||||||||||||||||||  | |||||||||||
Sbjct: 28560909 acctccatatatgattttgggtggcgaggcaccacagg 28560872
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>gb|AC162523.9| Mus musculus chromosome 8, clone RP23-370L21, complete sequence
          Length = 193777

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     atcctatcccagcttccaaag 86
              |||||||||||||||||||||
Sbjct: 135451 atcctatcccagcttccaaag 135431
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>gb|AC123616.11| Mus musculus chromosome 8, clone RP23-4F1, complete sequence
          Length = 228851

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 66     atcctatcccagcttccaaag 86
              |||||||||||||||||||||
Sbjct: 158107 atcctatcccagcttccaaag 158127
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 41     agtaaggtcctcatttccagcaata 65
              |||||| ||||||||||||||||||
Sbjct: 301681 agtaagctcctcatttccagcaata 301657
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>ref|XM_990171.1| PREDICTED: Mus musculus RIKEN cDNA C030017K20 gene (C030017K20Rik),
            mRNA
          Length = 2763

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   tcaacaagtaaggtcctcatt 55
            |||||||||||||||||||||
Sbjct: 1401 tcaacaagtaaggtcctcatt 1381
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>ref|XM_001000858.1| PREDICTED: Mus musculus RIKEN cDNA C030017K20 gene (C030017K20Rik),
            mRNA
          Length = 2763

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   tcaacaagtaaggtcctcatt 55
            |||||||||||||||||||||
Sbjct: 1401 tcaacaagtaaggtcctcatt 1381
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>ref|XM_989220.1| PREDICTED: Mus musculus RIKEN cDNA C030017K20 gene (C030017K20Rik),
            mRNA
          Length = 2763

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   tcaacaagtaaggtcctcatt 55
            |||||||||||||||||||||
Sbjct: 1401 tcaacaagtaaggtcctcatt 1381
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>gb|AE005953.1| Caulobacter crescentus CB15 section 279 of 359 of the complete genome
          Length = 11527

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   cgtggcctggctggtgctgtt 358
             |||||||||||||||||||||
Sbjct: 10749 cgtggcctggctggtgctgtt 10729
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>gb|AC134845.5| Mus musculus BAC clone RP24-424K5 from chromosome 1, complete sequence
          Length = 194449

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    cccccctaaactaaaccagtt 117
             |||||||||||||||||||||
Sbjct: 86921 cccccctaaactaaaccagtt 86941
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>dbj|AK047723.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
            enriched library, clone:C030017K20
            product:unclassifiable, full insert sequence
          Length = 2004

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 35   tcaacaagtaaggtcctcatt 55
            |||||||||||||||||||||
Sbjct: 1401 tcaacaagtaaggtcctcatt 1381
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>gb|AF134372.1|AF134372 Linyphia triangularis 28S ribosomal RNA gene, partial sequence
          Length = 322

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 305 caagtccccgtgaccggggctgttg 329
           ||||||||| |||||||||||||||
Sbjct: 151 caagtccccctgaccggggctgttg 175
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>gb|AC133938.4| Mus musculus BAC clone RP23-399J17 from 3, complete sequence
          Length = 208906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 624   ccttgagattcacacatgttt 644
             |||||||||||||||||||||
Sbjct: 49383 ccttgagattcacacatgttt 49403
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>gb|AC166173.3| Mus musculus BAC clone RP23-101K10 from chromosome 3, complete sequence
          Length = 196177

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 624    ccttgagattcacacatgttt 644
              |||||||||||||||||||||
Sbjct: 178306 ccttgagattcacacatgttt 178326
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>gb|AC168310.6| Mus musculus chromosome 8, clone RP24-345M22, complete sequence
          Length = 178580

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 66    atcctatcccagcttccaaag 86
             |||||||||||||||||||||
Sbjct: 21540 atcctatcccagcttccaaag 21560
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>gb|AY262829.1| Mus musculus cystathionine gamma-lyase (Cys3) gene, complete cds
          Length = 35246

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   gatcagggtttggtggctca 506
             ||||||||||||||||||||
Sbjct: 11223 gatcagggtttggtggctca 11242
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>gb|AC122490.3| Mus musculus BAC clone RP24-388D8 from chromosome 3, complete sequence
          Length = 140465

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 640    tgtttgaatttgtagagttt 659
              ||||||||||||||||||||
Sbjct: 113395 tgtttgaatttgtagagttt 113376
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>gb|AC117211.3| Mus musculus BAC clone RP23-287M3 from 3, complete sequence
          Length = 206579

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 487    gatcagggtttggtggctca 506
              ||||||||||||||||||||
Sbjct: 147282 gatcagggtttggtggctca 147263
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>emb|Z93242.1|HS389A20 Human DNA sequence from clone RP3-389A20 on chromosome Xp22.11-22.2
              Contains a calcium binding protein P22 (CHP)pseudogene, a
              novel gene, the 3' end of the NHS gene for Nance-Horan
              syndrome (congenital cataracts and dental anomalies), the
              SCML1 gene for sex comb on midleg-like 1 (Drosophila), a
              novel pseudogene and the RAI2 gene for retinoic acid
              induced 2, complete sequence
          Length = 208609

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    ccgtggcctggctggtgctg 356
              ||||||||||||||||||||
Sbjct: 133077 ccgtggcctggctggtgctg 133058
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>emb|AL162614.25| Human DNA sequence from clone RP1-220G17 on chromosome 11p12-14.1,
             complete sequence
          Length = 93100

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 632   ttcacacatgtttgaatttg 651
             ||||||||||||||||||||
Sbjct: 75950 ttcacacatgtttgaatttg 75969
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>gb|AC009659.5| Homo sapiens chromosome 11, clone RP11-362G8, complete sequence
          Length = 175372

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 632  ttcacacatgtttgaatttg 651
            ||||||||||||||||||||
Sbjct: 1025 ttcacacatgtttgaatttg 1044
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     cctgatcccgctgctgttcg 215
               ||||||||||||||||||||
Sbjct: 3706713 cctgatcccgctgctgttcg 3706694
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>dbj|AK042196.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630068L15 product:unclassifiable, full
            insert sequence
          Length = 1882

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 18   acattagagataatgtgtcaacaa 41
            |||||||| |||||||||||||||
Sbjct: 1258 acattagaaataatgtgtcaacaa 1235
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>gb|AC008233.3|AC008233 Drosophila melanogaster, chromosome 2L, region 25C-25C, BAC clone
             BACR13M11, complete sequence
          Length = 162387

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   atatcctggatatcatctgg 532
             ||||||||||||||||||||
Sbjct: 74676 atatcctggatatcatctgg 74695
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>dbj|AB121692.1| Mus musculus peptidylarginine deiminase gene cluster (Padi2, Padi1,
              Padi23, Padi4, Padi6), complete cds
          Length = 240498

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    tgtggtgctggaatctgaac 163
              ||||||||||||||||||||
Sbjct: 214546 tgtggtgctggaatctgaac 214527
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>gb|AC009969.10| Homo sapiens BAC clone RP11-418G17 from 2, complete sequence
          Length = 166892

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  ccagtttctgataatcctgg 131
            ||||||||||||||||||||
Sbjct: 8987 ccagtttctgataatcctgg 8968
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     tcccgtggcctggctggtgc 354
               ||||||||||||||||||||
Sbjct: 8209514 tcccgtggcctggctggtgc 8209495
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>gb|AF134375.1|AF134375 Uloborus plumipes 28S ribosomal RNA gene, partial sequence
          Length = 323

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 305 caagtccccgtgaccggggctgtt 328
           ||||||||| ||||||||||||||
Sbjct: 152 caagtccccctgaccggggctgtt 175
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>gb|AF134369.1|AF134369 Argiope bruennichi 28S ribosomal RNA gene, partial sequence
          Length = 322

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 305 caagtccccgtgaccggggctgtt 328
           ||||||||| ||||||||||||||
Sbjct: 151 caagtccccctgaccggggctgtt 174
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>gb|AF134363.1|AF134363 Coelotes terrestris 28S ribosomal RNA gene, partial sequence
          Length = 320

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 305 caagtccccgtgaccggggctgtt 328
           ||||||||| ||||||||||||||
Sbjct: 149 caagtccccctgaccggggctgtt 172
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>gb|AF134357.1|AF134357 Harpactea rubicunda 28S ribosomal RNA gene, partial sequence
          Length = 324

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 305 caagtccccgtgaccggggctgtt 328
           ||||||||| ||||||||||||||
Sbjct: 153 caagtccccctgaccggggctgtt 176
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>gb|AF134354.1|AF134354 Filistata insidiatrix 28S ribosomal RNA gene, partial sequence
          Length = 323

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 305 caagtccccgtgaccggggctgtt 328
           ||||||||| ||||||||||||||
Sbjct: 152 caagtccccctgaccggggctgtt 175
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>gb|AE003608.5| Drosophila melanogaster chromosome 2L, section 17 of 83 of the complete
             sequence
          Length = 174887

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   atatcctggatatcatctgg 532
             ||||||||||||||||||||
Sbjct: 76949 atatcctggatatcatctgg 76968
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>gb|AC139573.4| Mus musculus BAC clone RP23-472H13 from 16, complete sequence
          Length = 189632

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     acattagagataatgtgtcaacaa 41
              |||||||| |||||||||||||||
Sbjct: 112251 acattagaaataatgtgtcaacaa 112274
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>emb|AL807805.7| Mouse DNA sequence from clone RP23-48K5 on chromosome 4, complete
             sequence
          Length = 183495

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   tgtggtgctggaatctgaac 163
             ||||||||||||||||||||
Sbjct: 11147 tgtggtgctggaatctgaac 11166


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,597,303
Number of Sequences: 3902068
Number of extensions: 5597303
Number of successful extensions: 99764
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99567
Number of HSP's gapped (non-prelim): 197
length of query: 697
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 674
effective length of database: 17,143,297,704
effective search space: 11554582652496
effective search space used: 11554582652496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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