ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (A... 31 3.8
2PTP1_CAEEL (P28191) Tyrosine-protein phosphatase 1 (EC 3.1.3.48)... 31 3.8

>MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (ATP-binding|
           cassette sub-family C member 6)
          Length = 1498

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 359 LFNKWLTCCLYPQVNN-QPSSAGN 427
           LF  WL CC+ P +N  Q +SAGN
Sbjct: 142 LFGYWLLCCILPGINTVQQASAGN 165



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>PTP1_CAEEL (P28191) Tyrosine-protein phosphatase 1 (EC 3.1.3.48)|
           (Protein-tyrosine phosphatase 1)
          Length = 1026

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 150 RPVKYLLANSIQERTSPSLVRPSRVLGSLPEG-MLSHAHRQLADFMKDGAIHVVDH 314
           RP  Y L   + E  S  +  P+RV  S+P    LS + + LAD +  G   VVDH
Sbjct: 703 RPNVYRLGEEVDEPDSTMVPEPARVADSVPNSDKLSKSLQLLADSLNSG--KVVDH 756


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,893,834
Number of Sequences: 219361
Number of extensions: 2062513
Number of successful extensions: 5326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5326
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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