ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd11a17 |
|---|---|
| Clone Library Name | barley_pub |
>DHOM_YEAST (P31116) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 359 Score = 35.4 bits (80), Expect = 0.033 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADIIDL 232 VG+++ L+GSDNV+ I ++ Y ++P+VIQ GVL D+I + Sbjct: 300 VGIEKYDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGAAVTAAGVLGDVIKI 355
>AK2H_ECOLI (P00562) Bifunctional aspartokinase/homoserine dehydrogenase II| (AKII-HDII) [Includes: Aspartokinase II (EC 2.7.2.4); Homoserine dehydrogenase II (EC 1.1.1.3)] Length = 809 Score = 34.3 bits (77), Expect = 0.073 Identities = 21/60 (35%), Positives = 28/60 (46%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADIIDLQDL 223 VG++ V +D L L DNV I SR Y +PLVI+ + +DI L L Sbjct: 749 VGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINRLAQL 808
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADIIDL 232 V L+ +D +L GSDN++ + Y+ PL+++ GV DI+ L Sbjct: 853 VELRRYRRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAEVTAGGVFCDILRL 909
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 32.0 bits (71), Expect = 0.36 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADIIDL 232 V L+ +D +L GSDN++ + Y+ PL+++ GV DI+ L Sbjct: 856 VELRAYKRDHPFAQLSGSDNIIAFTTSRYKDQPLIVRGPGAGAEVTAGGVFCDILRL 912
>AK1H_SERMA (P27725) Bifunctional aspartokinase/homoserine dehydrogenase I| (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4); Homoserine dehydrogenase I (EC 1.1.1.3)] Length = 819 Score = 30.8 bits (68), Expect = 0.81 Identities = 15/55 (27%), Positives = 28/55 (50%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADII 238 V ++ V + L +++ +N + YSR Y+ PLV++ GV AD++ Sbjct: 756 VRIEAVDGNDPLYKVKNGENALAFYSRYYQPLPLVLRGYGAGNDVTAAGVFADLL 810
>DHOM_SCHPO (O94671) Probable homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 376 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/65 (27%), Positives = 30/65 (46%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADIIDLQDL 223 V L++ L+ SDN++ ++ Y + PLV+ GVL D+I + + Sbjct: 308 VKLEKYDASHPFANLQSSDNIISFTTKRYHTRPLVVIGAGAGAAVTAAGVLGDMIKI--M 365 Query: 222 FQTRA 208 Q RA Sbjct: 366 SQVRA 370
>AKH_BUCBP (Q89AR4) Bifunctional aspartokinase/homoserine dehydrogenase| (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 816 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/55 (23%), Positives = 27/55 (49%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADII 238 V + EV + L ++ +N + YS+ Y+ PLV++ G+ +D++ Sbjct: 758 VKIDEVDHNDPLYNIKNGENALAFYSKYYQPIPLVLRGYGAGNNVTASGIFSDVL 812
>AK1H_ECOLI (P00561) Bifunctional aspartokinase/homoserine dehydrogenase I| (AKI-HDI) [Includes: Aspartokinase I (EC 2.7.2.4); Homoserine dehydrogenase I (EC 1.1.1.3)] Length = 820 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADII 238 V + EV + L +++ +N + YS Y+ PLV++ GV AD++ Sbjct: 757 VKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLL 811
>RMT2_ASPFU (Q4X1R1) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 424 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Frame = +1 Query: 73 QINSSQTEPKMFIQP--QTPKPISVQWTLWSIIQLNNQTPWC*TRQ 204 + +S+ TE K +Q +T K + + +W+ + LN++TP C R+ Sbjct: 79 ETSSASTEQKSLVQSAAETVKYLLQEGAIWNDLDLNDETPGCIARR 124
>YHV5_YEAST (P38851) Hypothetical 143.6 kDa protein in SPO16-REC104 intergenic| region Length = 1228 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +2 Query: 86 AKQNQKCSYSLKRQNQFQFNGHYGRSYNSIIKLLGAKQDN 205 AK++ C + L R+ QFQ N R+ N I LL K DN Sbjct: 826 AKEDASCQFELCRKLQFQLN----RTSNFIKDLLWLKDDN 861
>LRP3_HUMAN (O75074) Low-density lipoprotein receptor-related protein 3| precursor (hLRp105) Length = 770 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 261 RRWCRFRLLHPGSPAGSSRSICCISPPHCHFPSISPVQNLLGP 389 R+ CR L+ +PA + R C PH P +S + LGP Sbjct: 700 RKVCREPLVDGPAPADAPREPCSAQDPH---PQVSTASSTLGP 739
>AKH_HAEIN (P44505) Bifunctional aspartokinase/homoserine dehydrogenase| (AK-HD) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 815 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/55 (23%), Positives = 28/55 (50%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADII 238 V + V ++ L +++ +N + Y+R Y+ PL+++ G+ ADI+ Sbjct: 756 VSIVAVDLNNPLYKVKDGENALAFYTRYYQPIPLLLRGYGAGNAVTAAGIFADIL 810
>UBP11_HUMAN (P51784) Ubiquitin carboxyl-terminal hydrolase 11 (EC 3.1.2.15)| (Ubiquitin thioesterase 11) (Ubiquitin-specific-processing protease 11) (Deubiquitinating enzyme 11) Length = 920 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +3 Query: 243 YQRELLRRWCRFRLLHPGSPAGSSRSICCISPPHCHFPSIS 365 YQR+ + R RLL P +G+ S C SPP F ++ Sbjct: 884 YQRQDVAR----RLLSPAGSSGAPASPACSSPPSSEFMDVN 920
>RMT2_EMENI (Q5B058) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 426 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +1 Query: 118 QTPKPISVQWTLWSIIQLNNQTPWC*TRQ 204 QT K + + +W+ + LNN+TP C R+ Sbjct: 95 QTVKLLLQEGAIWNDLDLNNETPGCIARR 123
>OSTA_ERWCT (Q6D0E3) Organic solvent tolerance protein precursor| Length = 787 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -3 Query: 377 ILHWGD*GEVTMWWRYTADATR 312 +LHWG G + WR+ AD T+ Sbjct: 311 LLHWGHSGVMDQVWRFDADYTK 332
>ZYGBL_MOUSE (Q80ZJ6) Zyg-11 protein homolog (Zyg-11 homolog B-like)| Length = 779 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +1 Query: 76 INSSQTEPKMFIQPQTPKPISVQWTLWSIIQLNNQTP 186 IN EP + + PQ P+S W W++ L + P Sbjct: 691 INYRSFEPILRLLPQGISPVSQHWATWALYNLVSVYP 727
>ZYGBL_PONPY (Q5RAG3) Zyg-11 protein homolog (Zyg-11 homolog B-like)| Length = 766 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +1 Query: 76 INSSQTEPKMFIQPQTPKPISVQWTLWSIIQLNNQTP 186 IN EP + + PQ P+S W W++ L + P Sbjct: 678 INYRSFEPILRLLPQGISPVSQHWATWALYNLVSVYP 714
>ZYGBL_HUMAN (Q7Z7L7) Zyg-11 protein homolog (Zyg-11 homolog B-like)| Length = 766 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +1 Query: 76 INSSQTEPKMFIQPQTPKPISVQWTLWSIIQLNNQTP 186 IN EP + + PQ P+S W W++ L + P Sbjct: 678 INYRSFEPILRLLPQGISPVSQHWATWALYNLVSVYP 714
>EMSY_MOUSE (Q8BMB0) Protein EMSY| Length = 1264 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +1 Query: 4 LPIL--QEMSKV*RAARVQSTILICQINSSQTEPKMFIQPQTPK 129 LP L Q V + V++T + ++ + +PK+++QPQTP+ Sbjct: 982 LPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQ 1025
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = -2 Query: 402 VGLQEVPKDSALGRLRGSDNVVEIYSRCYESSPLVIQXXXXXXXXXXXGVLADIIDL 232 V L+ K+ +L GSDN+ + Y P +I+ GV +DI+ L Sbjct: 857 VELKRYKKEHPFAQLSGSDNINAFTTERYNKQPPIIRGPGAGAEVTAGGVFSDILRL 913
>YCF1_TOBAC (P12222) Hypothetical 226 kDa protein ycf1 (ORF 1901)| Length = 1901 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/61 (24%), Positives = 31/61 (50%) Frame = +3 Query: 36 KGSPSAKHHPDLSNQQQPNRTKNVHTASNAKTNFSSMDIMVDHTTQ*SNSLVLNKTITLL 215 K SPS ++ L N ++ R +HT T++ ++ VD + S +++ +TL+ Sbjct: 530 KFSPSIINNTSLENLKERVRINRIHTIFLPNTDYQELEQKVDTVAKKPLSTEIDEFLTLI 589 Query: 216 S 218 + Sbjct: 590 N 590
>EMSY_HUMAN (Q7Z589) Protein EMSY| Length = 1322 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +1 Query: 4 LPIL--QEMSKV*RAARVQSTILICQINSSQTEPKMFIQPQTPK 129 LP L Q V + V++T + ++ + +PK+++QPQTP+ Sbjct: 1032 LPTLMAQPPQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQ 1075
>SYAC_YEAST (P40825) Alanyl-tRNA synthetase, cytoplasmic (EC 6.1.1.7)| (Alanine--tRNA ligase) (AlaRS) Length = 958 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +3 Query: 72 SNQQQPNRTKNVHTASNAKTNFSSMDIMVDHTTQ*SNSLVLNKTITLLSGKDLGGRL 242 +N+ P K + + NAK +++ M SN V +K+I LL+G D GR+ Sbjct: 842 TNENAPYLVKFIDISPNAKAITEAINYMK------SNDSVKDKSIYLLAGNDPEGRV 892
>RGS13_HUMAN (O14921) Regulator of G-protein signaling 13 (RGS13)| Length = 159 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +1 Query: 100 KMFIQPQTPKPISVQWTLWSIIQLNNQTPWC*TRQSRSCLEKILEVDYI 246 K++IQPQ+P+ I++ + I N Q P + +C E+ ++ Y+ Sbjct: 88 KIYIQPQSPREINIDSSTRETIIRNIQEP------TETCFEEAQKIVYM 130
>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)| Length = 463 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +3 Query: 42 SPSAKHHPDLSNQQQPNRTKNVHTASN 122 SP+ + HP + QQ PN + H + N Sbjct: 148 SPNQQQHPSPNQQQHPNSNQQQHLSPN 174 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = +3 Query: 42 SPSAKHHPDLSNQQQPNRTKNVHTASNAKTNFS 140 SP+ + HP + QQ P+ + H SN + + S Sbjct: 140 SPNQQQHPSPNQQQHPSPNQQQHPNSNQQQHLS 172
>SVIL_HUMAN (O95425) Supervillin (Archvillin) (p205/p250)| Length = 2214 Score = 27.3 bits (59), Expect = 8.9 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Frame = +3 Query: 123 AKTNFSSMDIM-VDHTTQ*SN-SLVLNKTITLLSGKDLGGRLYQRELLRRWCRFRLLHPG 296 +K NFS++ + V+ T Q SN S V K + LL K RR + RL+ P Sbjct: 1414 SKENFSNVSLRSVNLTEQNSNNSAVPYKRLMLLQIKG-----------RRHVQTRLVEPR 1462 Query: 297 SPAGSSRSICCISPPHCHFPSISPVQNLL 383 + A +S + PHC F + N++ Sbjct: 1463 ASALNSGDCFLLLSPHCCFLWVGEFANVI 1491 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,797,155 Number of Sequences: 219361 Number of extensions: 1069685 Number of successful extensions: 2731 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2731 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
