Clone Information

BLAST Search Result

Clone Name	rbasd11a09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (T...	35	0.19
2	IER5_MOUSE (O89113) Immediate early response gene 5 protein	34	0.24
3	ADDA_RAT (Q63028) Alpha-adducin (Erythrocyte adducin alpha subunit)	33	0.42
4	IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2	33	0.42
5	UL61_HCMVA (P16818) Hypothetical protein UL61	33	0.42
6	WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7...	33	0.54
7	ADDA_MOUSE (Q9QYC0) Alpha-adducin (Erythrocyte adducin alpha sub...	33	0.71
8	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	33	0.71
9	ATG4D_MOUSE (Q8BGV9) Cysteine protease ATG4D (EC 3.4.22.-) (Auto...	33	0.71
10	COL8_CAEEL (P18833) Cuticle collagen 8 precursor	32	0.93
11	RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-F...	32	0.93
12	GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-...	32	0.93
13	CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)	32	1.2
14	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	32	1.2
15	ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha sub...	32	1.6
16	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	32	1.6
17	SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in...	28	2.3
18	G3OX1_ARATH (Q39103) Gibberellin 3-beta-dioxygenase 1 (EC 1.14.1...	31	2.7
19	CLC14_HUMAN (Q86T13) C-type lectin domain family 14 member A pre...	31	2.7
20	BAB1_DROME (Q9W0K7) Protein bric-a-brac 1	30	3.5
21	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	30	3.5
22	COL39_CAEEL (Q09455) Cuticle collagen 39 precursor	30	3.5
23	CSKI2_HUMAN (Q8WXE0) Caskin-2	30	3.5
24	CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor	30	3.5
25	IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein	30	4.6
26	COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)	30	4.6
27	COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor	30	4.6
28	FA20C_HUMAN (Q8IXL6) Protein FAM20C precursor	30	4.6
29	VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21	30	4.6
30	IF2_STRAW (Q82K53) Translation initiation factor IF-2	30	4.6
31	COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor	30	4.6
32	SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos...	30	4.6
33	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	30	6.0
34	YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3	30	6.0
35	RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP ...	30	6.0
36	ZAR1_MOUSE (Q80SU3) Zygote arrest 1 (Oocyte-specific maternal ef...	30	6.0
37	RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type rya...	30	6.0
38	COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor	30	6.0
39	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	30	6.0
40	SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inosit...	30	6.0
41	COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)	30	6.0
42	COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibr...	29	7.9
43	EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril int...	29	7.9
44	CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor	29	7.9
45	YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6	29	7.9
46	EGR4_HUMAN (Q05215) Early growth response protein 4 (EGR-4) (AT133)	29	7.9
47	CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp...	29	7.9

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 34.7 bits (78), Expect = 0.19
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 469 GWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347
           G G  PP  +++GA+AP    R P P        PGP+  P
Sbjct: 740 GGGPRPPKTKKSGADAPGSDARAPLPAPAPPSTPPGPEPAP 780

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>IER5_MOUSE (O89113) Immediate early response gene 5 protein|
          Length = 308

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 305
           P ARA W    P+PE      P +      PGA  +E      G  EA+ G       A 
Sbjct: 89  PVARAAW----PEPEPQPQPQPQRPSVCHTPGAGSSEPVAAVAGSGEALRGGEEDSAAAA 144

Query: 304 WGR 296
           WGR
Sbjct: 145 WGR 147

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>ADDA_RAT (Q63028) Alpha-adducin (Erythrocyte adducin alpha subunit)|
          Length = 735

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 448 DPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347
           DPE A A AP  +E       EG+ +DPG  G P
Sbjct: 676 DPEPASASAPGAEEVASPATEEGSPMDPGSDGSP 709

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>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2|
          Length = 917

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 22/60 (36%), Positives = 24/60 (40%)
 Frame = -1

Query: 439 RAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRTRCERTDE 260
           R+GA A    ER P P   G    P P  RP A     G G     GR  VR   E  D+
Sbjct: 244 RSGAAAGGDDERRPAPRRSGPGAPPAPPRRPSA-PSRKGGGSDRRSGRIDVRAAIEGDDD 302

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>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
 Frame = -1

Query: 484 PAARAGWGRL-PPDPERAGAEAPAQQERVP----DPGAEGAELDPG----PQGRPEAMVG 332
           PA R G GR   P P  + A  P  + R P    DPG E  E   G    P G P A  G
Sbjct: 225 PAPRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEERGGGGKPPLGSPRATDG 284

Query: 331 S--SGTGIGAMWGR 296
           +   G G+ A  GR
Sbjct: 285 NRDPGAGVPARPGR 298

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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1)|
           (Protein kinase with no lysine 2) (Protein kinase,
           lysine-deficient 2)
          Length = 2297

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 19/46 (41%), Positives = 19/46 (41%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347
           PAA       P  P  AG E    QE  PDP A   E  P P G P
Sbjct: 98  PAALVAQPGAPGAPADAGPEPVGTQEPGPDPIAAAVETAPAPDGGP 143

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>ADDA_MOUSE (Q9QYC0) Alpha-adducin (Erythrocyte adducin alpha subunit)|
          Length = 735

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
 Frame = -1

Query: 451 PDPERAGAEAPAQQERVPDPGAE---------GAELDPGPQGRP 347
           PDP +  AEA  +    P PGAE         G+ +DPG  G P
Sbjct: 666 PDPTQPPAEADPEPASAPTPGAEEVASPATEEGSPMDPGSDGSP 709

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 23/57 (40%), Positives = 25/57 (43%)
 Frame = -1

Query: 487 VPAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTG 317
           +P AR G G  PP PE  G + PA       PG  GA   PG QG P    G    G
Sbjct: 690 IPGARGGAG--PPGPE--GGKGPA-----GPPGPPGASGSPGLQGMPGERGGPGSPG 737

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>ATG4D_MOUSE (Q8BGV9) Cysteine protease ATG4D (EC 3.4.22.-) (Autophagy-related|
           protein 4 homolog D) (Autophagin-4) (Autophagy-related
           cysteine endopeptidase 4) (AUT-like 4 cysteine
           endopeptidase)
          Length = 474

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 320
           PAA         D  RA    P  Q R+PDP       + GP G   A +GSSGT
Sbjct: 6   PAAAQYRSGSSEDARRADCRRPRGQTRIPDPS------NLGPSGSGVAALGSSGT 54

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>COL8_CAEEL (P18833) Cuticle collagen 8 precursor|
          Length = 282

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 484 PAARAG-WGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347
           PA  AG  GR  P     G   P +Q     PGA G    PGP+G P
Sbjct: 154 PAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGEP 200

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>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF|
           hands-containing Rab-interacting protein) (Eferin)
          Length = 756

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -1

Query: 490 AVPAARAGWGRLPPDPERAGAEAPAQQERVPDP-----GAEGAELDPGPQGRPEAMVGSS 326
           A PA+  G     PDPE  G + P   +  P P     GA     DP   G  E   G++
Sbjct: 4   APPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAA 63

Query: 325 GTGIGAMW 302
             G GA W
Sbjct: 64  ADG-GARW 70



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
 Frame = -1

Query: 451 PDPERAGAEAPAQQERV---------PDPGAEGAELDPGPQGRP 347
           PDP+  G + PA              P PG EG   DPGP   P
Sbjct: 48  PDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPP 91

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>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled|
           receptor PGR1)
          Length = 609

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 460 RLPPDPERAGAEAP--AQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWG 299
           R PP P  A   AP  A     P P +  A+  PGP+    +  GS   G+ A WG
Sbjct: 516 RRPPGPFPAAPAAPDGADPGEAPTPPSS-AQRSPGPRPSAHSHAGSLRPGLSASWG 570

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>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)|
          Length = 453

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -1

Query: 454 PPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323
           PP P   GA   A +  +PDPG  G +  PGP G P  + G  G
Sbjct: 2   PPGPP--GAPGKALKGDIPDPGLPGDQGPPGPDG-PRGVPGPPG 42

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = -1

Query: 454  PPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323
            PP P  A   AP     +PDPG  G +  PGP G P    G  G
Sbjct: 1240 PPGPAGATGRAPKD---IPDPGPPGDQGPPGPDG-PRGAPGPPG 1279

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>ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha subunit)|
          Length = 737

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 445 PERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347
           PE A   AP  +E  P    EGA  DPG  G P
Sbjct: 679 PEPAPDPAPVAEEAAPSAVEEGAAADPGSDGSP 711

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 460 RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSG 323
           R PP P       P Q+    +PG  GA+ DPGP+G R EA  GS G
Sbjct: 257 RGPPGPPGTNG-VPGQRGAAGEPGKNGAKGDPGPRGERGEA--GSPG 300

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>SIAH2_RAT (Q8R4T2) Ubiquitin ligase SIAH2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2) (Siah-2)
          Length = 325

 Score = 28.1 bits (61), Expect(2) = 2.3
 Identities = 20/65 (30%), Positives = 25/65 (38%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 305
           P+A     + PP P+   A +PA     P   A  +   PG    P A    SG G G  
Sbjct: 9   PSANKPCSKQPPPPQTPHAPSPA----APPAAATISAAGPGSSAVPAAAAVISGPGAGGG 64

Query: 304 WGRCS 290
            G  S
Sbjct: 65  AGPVS 69



 Score = 21.6 bits (44), Expect(2) = 2.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 171 GHLPCITWFRFCFCCPSARTA 109
           GHL C    +   CCP+ R A
Sbjct: 98  GHLVCNQCRQKLSCCPTCRGA 118

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>G3OX1_ARATH (Q39103) Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15)|
           (Gibberellin 3 beta-hydroxylase 1) (GA 3-oxidase 1)
           (AtGA3ox1)
          Length = 358

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 465 GDAFHQILNGLARKLPHSKSVYLTPGQKALNWTQGPKGDLK 343
           GD FH + NGL + + H   V  T  + ++ +  GP+ D+K
Sbjct: 273 GDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIK 313

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>CLC14_HUMAN (Q86T13) C-type lectin domain family 14 member A precursor|
           (Epidermal growth factor receptor 5) (EGFR-5)
          Length = 490

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -1

Query: 427 EAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG---TGIGAMWGRCSVRTRCE 272
           E+P+ Q R    G  G E DP P     A +GSS    T  G   G C +R R E
Sbjct: 427 ESPSSQPRKESMGPPGLESDPEP-----AALGSSSAHCTNNGVKVGDCDLRDRAE 476

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>BAB1_DROME (Q9W0K7) Protein bric-a-brac 1|
          Length = 977

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 22/62 (35%), Positives = 23/62 (37%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAM 305
           PA+ AG  R P  P  A A A       P P AE     P P       VG  G G G  
Sbjct: 423 PASPAGDSRFPLGPAAAMAAARELSGLGPGPSAEPRLPPPPPHHHGGGGVGGGGVGGGGA 482

Query: 304 WG 299
            G
Sbjct: 483 GG 484

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRPEAMVGSSGTG 317
           P   AG+   P     AG   PA     P    +PG +G    PGPQG P    GS G G
Sbjct: 336 PPGTAGFPGSPGFKGEAGPPGPAGASGNPGERGEPGPQGQAGPPGPQG-PPGRAGSPG-G 393

Query: 316 IGAM 305
            G M
Sbjct: 394 KGEM 397

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>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor|
          Length = 323

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -1

Query: 454 PPDPERAGAEAPAQQERVP----DPGAEGAELDPGPQGRPEAMVGSSGTG 317
           P  P  AG ++  QQE +      PG  GA   PGPQG P    G  G G
Sbjct: 116 PGQPGVAGPKSHEQQECIKCPAGSPGPAGAPGAPGPQG-PNGQPGHPGQG 164

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>CSKI2_HUMAN (Q8WXE0) Caskin-2|
          Length = 1202

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 442  ERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGI 314
            E AG   P        P ++  E +PGP+G P +  GSSG G+
Sbjct: 909  EPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSR-GSSGEGL 950

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>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 394 PGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRT 281
           PG +GA+ DPGP G P         G+  + GR  VRT
Sbjct: 191 PGLKGAKGDPGPYGLP------GFPGVSGLKGRMGVRT 222

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>IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein|
          Length = 327

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAG-AEAPAQQERVP 398
           PAARA W    P PER+  ++AP   + VP
Sbjct: 89  PAARASWPETEPQPERSSVSDAPRVGDEVP 118

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>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)|
          Length = 317

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 433 GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323
           G   P  + R   PG+ G+   PGP GRP    G+SG
Sbjct: 200 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 232

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>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 433  GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323
            G   P  + R   PG+ G+   PGP GRP    G+SG
Sbjct: 3001 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3033

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>FA20C_HUMAN (Q8IXL6) Protein FAM20C precursor|
          Length = 570

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -1

Query: 490 AVPAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG 353
           A PA RA  GR   DP       PA +  + DPG   +E  PGP G
Sbjct: 100 AEPAERALRGR---DPGALRPHDPAHRPLLRDPGPRRSESPPGPGG 142

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>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21|
          Length = 985

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
 Frame = -1

Query: 478 ARAGWGRLPP-----DPERAGAEAPAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSGTG 317
           A+A  GR P       P + G  +P  Q R PD  AEGA    GP G  P          
Sbjct: 773 AQAQQGRAPSMGGNLQPPQLGVSSPFAQSRTPDLPAEGA----GPSGINPTPSPAMQAAA 828

Query: 316 IGA 308
           IGA
Sbjct: 829 IGA 831

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 454 PPDPERAGAEAPAQQER-VPDPGAEGAELDPGPQGRP 347
           PP P+ A AE PA  ER    P A G    P P  RP
Sbjct: 84  PPAPKPAAAERPAAAERPAAAPAAPGPRPGPKPAPRP 120

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>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 433  GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323
            G   P  + R   PG+ G+   PGP GRP    G+SG
Sbjct: 3002 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3034

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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 222  TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 335
            +FDD      W+  + +S  VL   RP   P PVPLLP
Sbjct: 1516 SFDDD-----WSKGASVSFCVLPARRPPPPPPPVPLLP 1548

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -1

Query: 451 PDPERAGAEAPA--QQERVP----DPGAEGAELDPGPQGRPEAMVGSSG 323
           P+P+R   E  A   +E V     D G EG + DPGPQG P   VG  G
Sbjct: 73  PNPQRREGECCAFCPEEYVSPNSEDVGVEGPKGDPGPQG-PRGPVGPPG 120

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>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3|
          Length = 266

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRP 347
           P+   G    P  P + G +AP++      PGA G +  PGPQG P
Sbjct: 155 PSGPNGNPGAPGAPGQPGQDAPSEP---ITPGAPGPQGTPGPQGPP 197

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>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 841

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = -1

Query: 490 AVPAARAGWGRLPPDPER-AGAEAPAQQERVPDPGAEGAELDPGPQ----GRPEAMVGSS 326
           A PAA A  G  P + +R A A+ PA++ R P P        P P+    G+P A  G S
Sbjct: 21  AEPAAHAQDGGGPVEHDRSAPADKPAERTR-PKPAPPERPRPPPPRARAAGQPAARSGGS 79

Query: 325 GTGIGAMWGRCSVRTRCERTDE*AQPCKPLLSSN 224
              + A   R  V+ R   T    +P   ++ +N
Sbjct: 80  SNRVRARLARLGVQ-RANLTHPVLEPLLRIVRAN 112

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>ZAR1_MOUSE (Q80SU3) Zygote arrest 1 (Oocyte-specific maternal effect factor)|
          Length = 361

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -1

Query: 481 AARAGWGRLPPDPERAGAEAPAQQE---RVPDPGAEGAELDPGPQGRPEAMVGSSGT 320
           A +AGW + PP PE   + A  Q E     P P AE A+ DPG    P        T
Sbjct: 194 AGQAGWEQQPP-PEDRNSVAAMQSEPGSEEPCPAAEMAQ-DPGDSDAPRDQASPQST 248

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>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -1

Query: 451  PDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVR 284
            P+PE+A AE   ++E VP P  E  +    P   P+   G SG G+   WG   V+
Sbjct: 4493 PEPEKADAE-NGEKEEVPKPPPEPPKKTAPPPPPPKKEEGGSG-GL-EFWGELEVQ 4545

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>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -1

Query: 460 RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT-GIGAMWGRCSVR 284
           R PP P   G   PA       PG +G   +PGP+G P    G  GT G+  + G+    
Sbjct: 138 RGPPGPP--GIPGPAGISVPGKPGPQGPTGEPGPRGFP----GEKGTSGVPGLNGQKGEM 191

Query: 283 TRCERTDE*AQPCKP 239
             C        PC+P
Sbjct: 192 GHC-------TPCRP 199

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 487 VPAARAGWG-RLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQG 353
           +P A    G R PP P  A   AP  +    +PG  GA+ +PGP+G
Sbjct: 403 IPGAPGLMGARGPPGPAGANG-APGLRGGAGEPGKNGAKGEPGPRG 447

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>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 222  TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 335
            +FDD      W+  + +S  VL   RP   P PVPLLP
Sbjct: 1516 SFDDD-----WSKGTNVSFCVLPARRPPPPPPPVPLLP 1548

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>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)|
          Length = 86

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 433 GAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323
           G   P  + R   PG+ G+   PGP GRP    G SG
Sbjct: 52  GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GDSG 84

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>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)|
          Length = 3124

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 433  GAEAPAQQERVPDPGAEGAELDPGPQGRP 347
            G   P  + R   PG+ G+   PGP GRP
Sbjct: 3005 GPPGPQGESRTGPPGSTGSRGPPGPPGRP 3033

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>EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril interface-located|
           protein 2) (Elastin microfibril interfacer 2) (Protein
           FOAP-10)
          Length = 1053

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGI 314
           PA     GR P  P+R   E P Q      PG+ G   + G  G P A  G SG G+
Sbjct: 814 PATAEDPGRRPVLPQRPPEERPPQP-----PGSTGVIAETGQAG-PPAGAGVSGRGL 864

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>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor|
          Length = 1019

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/64 (31%), Positives = 22/64 (34%)
 Frame = -1

Query: 454 PPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRTRC 275
           P DP   G   P     VP P     E +PGP G P        T +    G C    RC
Sbjct: 557 PADPGPPGEPGPRGPRGVPGP-----EGEPGPPGDPGLTECDVMTYVRETCGCCDCEKRC 611

Query: 274 ERTD 263
              D
Sbjct: 612 GALD 615

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>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = -1

Query: 484 PAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 323
           PA  AG    P  P  AG +          PGA+G    PGP G PE   G +G
Sbjct: 135 PAGEAGPAGAPGAPGPAGPDG--------QPGADGQGGAPGPAG-PEGPAGDAG 179

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>EGR4_HUMAN (Q05215) Early growth response protein 4 (EGR-4) (AT133)|
          Length = 486

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
 Frame = -1

Query: 460 RLPPDPERAGAEAPAQQERVPD-PGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVR 284
           +L P   R+ A A   +  V D PG+ G    P P   P     +     G   G+CS R
Sbjct: 310 QLSPLGLRSAAAADFPKPLVADIPGSSGVAAPPVPPPPPTPFPQAKARRKGRRGGKCSTR 369

Query: 283 TRCERTDE*AQPC 245
             C R    A  C
Sbjct: 370 CFCPRPHAKAFAC 382

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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -1

Query: 490  AVPAARAGWGRLPPDPERAGAEAPAQQERVPDPGAEGAELDPGPQGRPEAMV 335
            A P    G    P  P   GA  P Q      PG+ G+   PGP G P + V
Sbjct: 1212 AGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHV 1263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,024,456
Number of Sequences: 219361
Number of extensions: 1587312
Number of successful extensions: 7661
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 5598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7395
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result