ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9p19 |
|---|---|
| Clone Library Name | barley_pub |
>Y3432_MYCBO (P59986) Hypothetical protein Mb3432| Length = 348 Score = 40.0 bits (92), Expect = 0.005 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +3 Query: 420 KQIVLLTDGMDTRPYRLSWPRMSIVYDVSPGRIFSTAAQQLRGAGAK 560 +Q+V+L G+DTR YRL WP ++VY++ + + L A+ Sbjct: 143 RQVVILAAGLDTRAYRLPWPPGTVVYEIDQPAVIKFKTRALANLNAE 189
>Y3399_MYCTU (Q50726) Hypothetical protein Rv3399/MT3507| Length = 348 Score = 40.0 bits (92), Expect = 0.005 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +3 Query: 420 KQIVLLTDGMDTRPYRLSWPRMSIVYDVSPGRIFSTAAQQLRGAGAK 560 +Q+V+L G+DTR YRL WP ++VY++ + + L A+ Sbjct: 143 RQVVILAAGLDTRAYRLPWPPGTVVYEIDQPAVIKFKTRALANLNAE 189
>Y917_MYCBO (P64748) Hypothetical protein Mb0917c| Length = 325 Score = 33.9 bits (76), Expect(2) = 0.028 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +3 Query: 405 TATFDKQIVLLTDGMDTRPYRLSWPRMSIVYDV 503 TA KQ+V+L G+D+R +RL WP + ++++ Sbjct: 93 TAAGMKQVVILAAGLDSRAFRLQWPIGTTIFEL 125 Score = 22.7 bits (47), Expect(2) = 0.028 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 14/59 (23%) Frame = +1 Query: 268 DPLFIDPYAAVLLSLDVAHQASESLVSPLMPSADHYRLT--------------TRYLDE 402 DPL IDPYA V A ++ +P DHY T TRY DE Sbjct: 33 DPLAIDPYAEVFCRAAGGEWA--DVLDGKLP--DHYLTTGDFGEHFVNFQGARTRYFDE 87
>Y893_MYCTU (P64747) Hypothetical protein Rv0893c/MT0917| Length = 325 Score = 33.9 bits (76), Expect(2) = 0.028 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +3 Query: 405 TATFDKQIVLLTDGMDTRPYRLSWPRMSIVYDV 503 TA KQ+V+L G+D+R +RL WP + ++++ Sbjct: 93 TAAGMKQVVILAAGLDSRAFRLQWPIGTTIFEL 125 Score = 22.7 bits (47), Expect(2) = 0.028 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 14/59 (23%) Frame = +1 Query: 268 DPLFIDPYAAVLLSLDVAHQASESLVSPLMPSADHYRLT--------------TRYLDE 402 DPL IDPYA V A ++ +P DHY T TRY DE Sbjct: 33 DPLAIDPYAEVFCRAAGGEWA--DVLDGKLP--DHYLTTGDFGEHFVNFQGARTRYFDE 87
>NRIP1_MOUSE (Q8CBD1) Nuclear receptor-interacting protein 1 (Nuclear factor| RIP140) (Receptor-interacting protein 140) Length = 1161 Score = 31.6 bits (70), Expect = 1.8 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 6/41 (14%) Frame = +1 Query: 91 SPPPGSCQTKGRLL-HPGLFATGADVP-----GCGGTLPEP 195 SP PGSC T R +PG+ T P GC G+ PEP Sbjct: 989 SPQPGSCVTDHRTFSYPGMVKTPLSPPFPEHLGCVGSRPEP 1029
>FLHE_SALTY (P0A1N4) Flagellar protein flhE precursor| Length = 130 Score = 31.2 bits (69), Expect = 2.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 173 QPGTSAPVAKSPGCKSLPFVWQLPGGG 93 Q GT+ A P + L FVW++PGGG Sbjct: 86 QSGTTHGFAHVPAVEPLRFVWEVPGGG 112
>FLHE_SALTI (P0A1N5) Flagellar protein flhE precursor| Length = 130 Score = 31.2 bits (69), Expect = 2.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 173 QPGTSAPVAKSPGCKSLPFVWQLPGGG 93 Q GT+ A P + L FVW++PGGG Sbjct: 86 QSGTTHGFAHVPAVEPLRFVWEVPGGG 112
>SSR4_MOUSE (P49660) Somatostatin receptor type 4 (SS4R)| Length = 384 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -1 Query: 179 PPQPGTSAPVAKSPGCKSLPF 117 PP P PV PGCK +PF Sbjct: 358 PPLPCQQEPVQAEPGCKQVPF 378
>FOLH1_HUMAN (Q04609) Glutamate carboxypeptidase 2 (EC 3.4.17.21) (Glutamate| carboxypeptidase II) (Membrane glutamate carboxypeptidase) (mGCP) (N-acetylated-alpha-linked acidic dipeptidase I) (NAALADase I) (Pteroylpoly-gamma-glutamate carboxypeptidase) (F Length = 750 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 143 SPGCKSLPFVWQLPGGGESGG 81 +PG KS P W LPGGG G Sbjct: 236 APGVKSYPDGWNLPGGGVQRG 256
>KUP1_LACJO (Q74LN3) Probable potassium transport system protein kup 1| Length = 683 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = -2 Query: 532 AAVLKILPGDTSYTIDILGQLSLYGRVSIPSVNKTICLSNVAV 404 A+ LK LP ++I+ + G++ IPSVNK IC + +A+ Sbjct: 324 ASGLKFLP-----RMNIMYPSTKKGQIYIPSVNKMICAATIAI 361 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,042,937 Number of Sequences: 219361 Number of extensions: 1200971 Number of successful extensions: 4022 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3768 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3997 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
