>UBP36_HUMAN (Q9P275) Ubiquitin carboxyl-terminal hydrolase 36 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 36)
            (Ubiquitin-specific-processing protease 36)
            (Deubiquitinating enzyme 36)
          Length = 1121

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = +2

Query: 11   VLDEWDEEYDRGKAKKVRKAKEDE 82
            V+D+WDEE+DRGK KK++K K ++
Sbjct: 1066 VVDDWDEEFDRGKEKKIKKFKREK 1089

>MYT1L_HUMAN (Q9UL68) Myelin transcription factor 1-like protein (MyT1L protein)|
           (MyT1-L)
          Length = 1186

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 17  DEWDEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEKQ 148
           DE DEE DR + +++ +  ED+D+DG +    E       +E++
Sbjct: 121 DEEDEEGDREEEEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEE 164

>SAN1_YEAST (P22470) Protein SAN1|
          Length = 610

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 17  DEWDEEYDRGKAKKVRKAKEDEDDDGT 97
           DE+++E D  KAK+ R ++ +E+ +GT
Sbjct: 170 DEYEDEVDSTKAKRKRDSENEEESEGT 196

>MUTS_ACIAD (Q6FC54) DNA mismatch repair protein mutS|
          Length = 881

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 79  RGRRRHEPLPG*GKPRISAKGETKTLEQAGQTTSLGE 189
           RG+   EP+P  G P  +A+G    L +AGQT ++ E
Sbjct: 61  RGKANGEPIPMAGVPYHAAEGYLARLVRAGQTVAICE 97

>VCOM_ADE02 (P03267) Minor core protein (Protein V) (pV)|
          Length = 369

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 26  DEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEK 145
           +++Y   K K+V+K K+D+DDD  +  + E  H +A + +
Sbjct: 26  EQDYKPRKLKRVKKKKKDDDDDELDD-EVELLHATAPRRR 64

>RS5_BIFLO (P59122) 30S ribosomal protein S5|
          Length = 233

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 46 KGKEGQKSEGRRGRRRH 96
          KG+ GQ+ EGRRG RR+
Sbjct: 19 KGRRGQRGEGRRGERRN 35

>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)|
          Length = 511

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 26  DEEYDRGKAKKVRKAKEDEDDDGTNPFQAEANHVSARKEKQ 148
           D+E +  K KK +K K D+D+D  +  +A+      +++K+
Sbjct: 445 DDEEEEKKEKKEKKRKRDDDEDSKDSKKAKKEKKDKKEKKE 485

>CASQ2_RAT (P51868) Calsequestrin-2 precursor (Calsequestrin, cardiac muscle|
           isoform)
          Length = 413

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 14  LDEWDEEYDRGKAKKVRKAKEDEDDDGTN 100
           L++W E+   GK        EDEDDDG N
Sbjct: 358 LEDWIEDVLSGKINTEDDDNEDEDDDGDN 386

>HSP3_MURBR (P83213) Sperm protamine P3|
          Length = 54

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 37  RPWKGKEGQKSEGRRGRRRHEPLPG*GKPRISAKGE 144
           R  KGK G+K +G++ RRR     G GK +   KG+
Sbjct: 5   RRGKGKGGKKKKGKKRRRRGRKGKGKGKKKGKRKGK 40

>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)|
          Length = 542

 Score = 24.3 bits (51), Expect(2) = 8.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 40  PWKGKEGQKSEGRRGRRRHEPLP 108
           P   K  +   GRRGR R EP P
Sbjct: 54  PTGSKPRKPGAGRRGRPREEPSP 76



 Score = 23.1 bits (48), Expect(2) = 8.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 129 QRERRNKDLGASRPDHVARRAEETPPQEDSVERKERK 239
           +R+ R   L A  PD      EE   +ED  E  E K
Sbjct: 99  KRDPRETFLVARAPDAEDEEEEEEEDEEDEEEEAEEK 135

>NEED_PINRA (O04407) Floricaula/leafy-like protein FL1 (NEEDLY protein)|
          Length = 404

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 506 RCRKDG*PILFMIIHSCAAGVTRTKKMLRQKRRACPTATTLQRISH 369
           R +K+G   LF +   C   +   +++ ++K   CPT  T Q   H
Sbjct: 260 RGKKNGLDYLFDLYEQCGKFLLEVQRIAKEKGEKCPTKVTNQVFRH 305

>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC|
           2.4.1.12) (AtCesA-4) (Irregular xylem protein 5)
           (AtIRX5)
          Length = 1049

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
 Frame = +2

Query: 5   GYVLDEWDEEYDRGKAKKVRKA--------KEDEDDDGTNPFQAEANHVSARK 139
           GY   EW E  D+ KA++ ++          ED++DD      AEA     RK
Sbjct: 151 GYTDAEWKERVDKWKARQEKRGLVTKGEQTNEDKEDDEEEYLDAEARQPLWRK 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,651,092
Number of Sequences: 219361
Number of extensions: 1033144
Number of successful extensions: 3811
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3777
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)