ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9p15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC61A_YEAST (P32915) Protein transport protein SEC61 alpha subunit 31 2.6
2PMT7_YEAST (Q06644) Dolichyl-phosphate-mannose--protein mannosyl... 30 5.8
3MODU_DROME (P13469) DNA-binding protein modulo 30 7.6

>SC61A_YEAST (P32915) Protein transport protein SEC61 alpha subunit|
          Length = 480

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 136 LPSNSYLDLGGPYGKFVPFIIAGEGGFGEHKQLNWTNLFLL 258
           + SN  LDL  P+  F+P +IA E     +++L WT + LL
Sbjct: 1   MSSNRVLDLFKPFESFLPEVIAPERKVPYNQKLIWTGVSLL 41



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>PMT7_YEAST (Q06644) Dolichyl-phosphate-mannose--protein mannosyltransferase 7|
           (EC 2.4.1.109)
          Length = 662

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 154 LDLGGPYGKFVPFIIAGEGGFGEHKQLNWTNLFLL 258
           L L GPY K++P+ I  + G G  K L++   FL+
Sbjct: 4   LRLQGPYRKYIPYNIFQQCGIGHLKTLDYIFAFLI 38



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>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 564 QGFWRSILANASRISLIPCIASPRSLLRRRDLCAEIGHPLIHVPTQICQDCNLFMGLMAF 385
           +GF +S LAN S ++  P    P SLL+ R L   +       P +  +D     G   F
Sbjct: 464 EGFCKSFLANESIVNNAPIFIEPNSLLKHRLLKKRLAIGQTRAPRKFQKDTKPNFGKKPF 523


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,190,129
Number of Sequences: 219361
Number of extensions: 1677968
Number of successful extensions: 3976
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3975
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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