ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9p10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474422.1| Oryza sativa (japonica cultivar-group), predic... 589 e-165
2dbj|AK067506.1| Oryza sativa (japonica cultivar-group) cDNA clon... 589 e-165
3gb|BT017949.1| Zea mays clone EL01N0522B07.c mRNA sequence 256 8e-65
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 208 2e-50
5emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 208 2e-50
6emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 208 2e-50
7emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 208 2e-50
8gb|AY108407.1| Zea mays PCO110242 mRNA sequence 68 4e-08
9ref|NM_120434.3| Arabidopsis thaliana protein binding AT5G03540 ... 62 2e-06
10gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 62 2e-06
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
12gb|AY133751.1| Arabidopsis thaliana clone U20002 unknown protein... 62 2e-06
13gb|AY072155.1| Arabidopsis thaliana unknown protein (At5g03540) ... 62 2e-06
14emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BA... 62 2e-06
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
16dbj|AK065713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
17ref|NM_124613.2| Arabidopsis thaliana protein binding AT5G52340 ... 58 4e-05
18dbj|AB019226.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 58 4e-05
19dbj|AK066482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
20gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
22gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
23dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
24gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.037
25emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.037
26emb|AL691431.20| Mouse DNA sequence from clone RP23-257P7 on chr... 44 0.58
27gb|AC163041.3| Mus musculus BAC clone RP23-32K16 from chromosome... 42 2.3
28gb|AC156036.4| Mus musculus BAC clone RP23-341B16 from chromosom... 42 2.3
29gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome... 42 2.3
30gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome... 42 2.3
31gb|AC134560.5| Mus musculus BAC clone RP24-100B13 from chromosom... 42 2.3
32gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome... 42 2.3
33gb|AC132472.3| Mus musculus BAC clone RP23-113B13 from chromosom... 42 2.3
34emb|CT030157.8| Mouse DNA sequence from clone RP24-316P8 on chro... 42 2.3
35gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complet... 42 2.3
36gb|AC163633.4| Mus musculus BAC clone RP24-177N8 from chromosome... 42 2.3
37emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chr... 42 2.3
38ref|NM_124614.1| Arabidopsis thaliana protein binding AT5G52350 ... 40 9.1
39gb|AC093197.2| Drosophila melanogaster clone BACR25N15, complete... 40 9.1
40gb|AC140340.3| Mus musculus BAC clone RP24-260O19 from chromosom... 40 9.1
41gb|BC021774.1| Mus musculus cDNA clone IMAGE:4238277, partial cds 40 9.1
42gb|AC112142.4| Mus musculus BAC clone RP23-4P23 from chromosome ... 40 9.1
43gb|AC104964.12| Homo sapiens chromosome 8, clone RP11-981G7, com... 40 9.1
44emb|AL109733.1|HSJ537P22 Human DNA sequence from clone RP4-537P2... 40 9.1
45emb|AL031665.19|HS545L17 Human DNA sequence from clone RP4-545L1... 40 9.1
46emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in ... 40 9.1
47emb|CR931728.1| Medicago truncatula chromosome 5 clone mth2-175g... 40 9.1
48gb|AE014181.1| Mus musculus piebald deletion region section 9 of... 40 9.1
49ref|NM_136185.2| Drosophila melanogaster CG10651-RA (CG10651), mRNA 40 9.1
50dbj|AK165449.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 9.1
51gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome ... 40 9.1
52gb|AC093044.1| Drosophila melanogaster, chromosome 2L, region 38... 40 9.1
53dbj|AK049490.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 9.1
54dbj|AK048733.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 9.1
55emb|BX511021.9| Zebrafish DNA sequence from clone DKEY-16P21 in ... 40 9.1
56gb|AC064874.4| Homo sapiens BAC clone RP11-680O16 from 2, comple... 40 9.1
57gb|AC102461.15| Mus musculus chromosome 8, clone RP24-319H6, com... 40 9.1
58gb|BT024329.1| Drosophila melanogaster IP10611 full insert cDNA 40 9.1
59gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosom... 40 9.1
60gb|AC155253.1| Mus musculus BAC clone RP24-172G9 from 17, comple... 40 9.1
61gb|AC174800.2| Mus musculus BAC clone CH36-125B10 from chromosom... 40 9.1
62gb|AE003665.4| Drosophila melanogaster chromosome 2L, section 74... 40 9.1
63gb|AC006215.1|AC006215 Drosophila melanogaster, chromosome 2L, r... 40 9.1
64gb|AE015927.1| Clostridium tetani E88, complete genome 40 9.1
65emb|CT030652.14| Mouse DNA sequence from clone RP23-48G20 on chr... 40 9.1 
>ref|XM_474422.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1905

 Score =  589 bits (297), Expect = e-165
 Identities = 487/549 (88%), Gaps = 1/549 (0%)
 Strand = Plus / Plus

                                                                        
Query: 118  gtatacagccctcctgcacttattgagcccaagtttgttcctttgcttgcgaaattggca 177
            ||||||||||| ||||| ||||||||||| | |||  ||||||| || || ||||| |||
Sbjct: 571  gtatacagcccccctgctcttattgagccaaggttcattccttttctggctaaattagca 630

                                                                        
Query: 178  caacagctggtccaagctggatgccaacagcaatgtgcagaaatatacagcgaagctcgt 237
            |||||| |||| ||||| ||||||||||| |||||  ||||||||||||||||||| |||
Sbjct: 631  caacagttggtacaagcgggatgccaacaacaatgctcagaaatatacagcgaagcccgt 690

                                                                        
Query: 238  gcttcagctttggagtcgagtttgaagaacttgggtgttgagaaactgagtaaagatgaa 297
            || || ||||| ||||| |||||||||| |||||||||||| |||||||| |||||||||
Sbjct: 691  gcctctgctttagagtcaagtttgaagagcttgggtgttgaaaaactgagcaaagatgaa 750

                                                                        
Query: 298  gtgcagaaaatgccttgggagattttggagtctaaaataggaaattggattcatttcatg 357
            |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 751  gtgcagaaaatgccatgggaaattttggagtctaaaatagggaattggattcacttcatg 810

                                                                        
Query: 358  cgaattgctgtgaaacttcttttcgctggggaacgccagctctgtgaccaagtttttgaa 417
            ||||||||||| ||||||||||| || | |||||| ||||| |||||||| |||||||| 
Sbjct: 811  cgaattgctgttaaacttctttttgccgcggaacgtcagctttgtgaccaggtttttgag 870

                                                                        
Query: 418  tgtagccaatctttgagagataagtgtttttctgcaataaccaagaacagtttggctact 477
            || || ||||||||||| |||||||| ||| ||  |||||| | ||| ||||||||||| 
Sbjct: 871  tgcagtcaatctttgagggataagtgctttgctcaaataactaggaatagtttggctaca 930

                                                                        
Query: 478  ctactcagctttggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgtt 537
            |||||||||||||| ||||||||||||||||| ||||||||||| |||||  ||||||| 
Sbjct: 931  ctactcagctttggagaggcaattgctatgagtaaaagatcaccagagaagctgtttgtg 990

                                                                        
Query: 538  ctgctagacatgtatgagataatgtgtgaacttcaaacagagattgacaccatctttgtt 597
            ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 991  ctgctagacatgtatgaaataatgtgtgaacttcaagcagatattgacaccatctttgtt 1050

                                                                        
Query: 598  ggagaatcatgctctcaaatgcgtgactctgcactcagtctgacaaaaatgtttagcaca 657
            |||||||||||||||||||||||||| |||||| | ||| |||| |||||| ||||||||
Sbjct: 1051 ggagaatcatgctctcaaatgcgtgagtctgcattgagtttgac-aaaatgcttagcaca 1109

                     
Query: 658  aactgcaca 666
            |||||||||
Sbjct: 1110 aactgcaca 1118
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>dbj|AK067506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108D21, full
            insert sequence
          Length = 2478

 Score =  589 bits (297), Expect = e-165
 Identities = 487/549 (88%), Gaps = 1/549 (0%)
 Strand = Plus / Plus

                                                                        
Query: 118  gtatacagccctcctgcacttattgagcccaagtttgttcctttgcttgcgaaattggca 177
            ||||||||||| ||||| ||||||||||| | |||  ||||||| || || ||||| |||
Sbjct: 798  gtatacagcccccctgctcttattgagccaaggttcattccttttctggctaaattagca 857

                                                                        
Query: 178  caacagctggtccaagctggatgccaacagcaatgtgcagaaatatacagcgaagctcgt 237
            |||||| |||| ||||| ||||||||||| |||||  ||||||||||||||||||| |||
Sbjct: 858  caacagttggtacaagcgggatgccaacaacaatgctcagaaatatacagcgaagcccgt 917

                                                                        
Query: 238  gcttcagctttggagtcgagtttgaagaacttgggtgttgagaaactgagtaaagatgaa 297
            || || ||||| ||||| |||||||||| |||||||||||| |||||||| |||||||||
Sbjct: 918  gcctctgctttagagtcaagtttgaagagcttgggtgttgaaaaactgagcaaagatgaa 977

                                                                        
Query: 298  gtgcagaaaatgccttgggagattttggagtctaaaataggaaattggattcatttcatg 357
            |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 978  gtgcagaaaatgccatgggaaattttggagtctaaaatagggaattggattcacttcatg 1037

                                                                        
Query: 358  cgaattgctgtgaaacttcttttcgctggggaacgccagctctgtgaccaagtttttgaa 417
            ||||||||||| ||||||||||| || | |||||| ||||| |||||||| |||||||| 
Sbjct: 1038 cgaattgctgttaaacttctttttgccgcggaacgtcagctttgtgaccaggtttttgag 1097

                                                                        
Query: 418  tgtagccaatctttgagagataagtgtttttctgcaataaccaagaacagtttggctact 477
            || || ||||||||||| |||||||| ||| ||  |||||| | ||| ||||||||||| 
Sbjct: 1098 tgcagtcaatctttgagggataagtgctttgctcaaataactaggaatagtttggctaca 1157

                                                                        
Query: 478  ctactcagctttggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgtt 537
            |||||||||||||| ||||||||||||||||| ||||||||||| |||||  ||||||| 
Sbjct: 1158 ctactcagctttggagaggcaattgctatgagtaaaagatcaccagagaagctgtttgtg 1217

                                                                        
Query: 538  ctgctagacatgtatgagataatgtgtgaacttcaaacagagattgacaccatctttgtt 597
            ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 1218 ctgctagacatgtatgaaataatgtgtgaacttcaagcagatattgacaccatctttgtt 1277

                                                                        
Query: 598  ggagaatcatgctctcaaatgcgtgactctgcactcagtctgacaaaaatgtttagcaca 657
            |||||||||||||||||||||||||| |||||| | ||| |||| |||||| ||||||||
Sbjct: 1278 ggagaatcatgctctcaaatgcgtgagtctgcattgagtttgac-aaaatgcttagcaca 1336

                     
Query: 658  aactgcaca 666
            |||||||||
Sbjct: 1337 aactgcaca 1345
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>gb|BT017949.1| Zea mays clone EL01N0522B07.c mRNA sequence
          Length = 1300

 Score =  256 bits (129), Expect = 8e-65
 Identities = 253/293 (86%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 374 ttcttttcgctggggaacgccagctctgtgaccaagtttttgaatgtagccaatctttga 433
           ||||||| |||||||| ||||| || || ||||||| |||||| || || ||||| ||||
Sbjct: 14  ttctttttgctggggagcgccaactttgcgaccaagcttttgagtgcagtcaatcgttga 73

                                                                       
Query: 434 gagataagtgtttttctgcaataaccaagaacagtttggctactctactcagctttggcg 493
           | |||||||| ||| |||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct: 74  gggataagtgctttgctgcaataacaaagaacagtttggctacactactcagttttggag 133

                                                                       
Query: 494 aggcaattgctatgagcaaaagatcaccggagaaattgtttgttctgctagacatgtatg 553
           |||| ||||||||||| ||| ||||||| |||||| | ||||||||| |||||||||| |
Sbjct: 134 aggctattgctatgagtaaacgatcaccagagaaactctttgttctgttagacatgtacg 193

                                                                       
Query: 554 agataatgtgtgaacttcaaacagagattgacaccatctttgttggagaatcatgctctc 613
           |||||||||| || ||||||||||||||||| ||||| || |||||||||||| | || |
Sbjct: 194 agataatgtgcgagcttcaaacagagattgataccattttcgttggagaatcaggttcgc 253

                                                                
Query: 614 aaatgcgtgactctgcactcagtctgacaaaaatgtttagcacaaactgcaca 666
           ||||||| ||||||||||| ||| | || |||||| ||||||||||| |||||
Sbjct: 254 aaatgcgcgactctgcactgagtttaac-aaaatgcttagcacaaacagcaca 305
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  208 bits (105), Expect = 2e-50
 Identities = 183/209 (87%)
 Strand = Plus / Minus

                                                                            
Query: 370      aaacttcttttcgctggggaacgccagctctgtgaccaagtttttgaatgtagccaatct 429
                ||||||||||| || | |||||| ||||| |||||||| |||||||| || || ||||||
Sbjct: 35060713 aaacttctttttgccgcggaacgtcagctttgtgaccaggtttttgagtgcagtcaatct 35060654

                                                                            
Query: 430      ttgagagataagtgtttttctgcaataaccaagaacagtttggctactctactcagcttt 489
                ||||| |||||||| ||| ||  |||||| | ||| ||||||||||| ||||||||||||
Sbjct: 35060653 ttgagggataagtgctttgctcaaataactaggaatagtttggctacactactcagcttt 35060594

                                                                            
Query: 490      ggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgttctgctagacatg 549
                || ||||||||||||||||| ||||||||||| |||||  ||||||| ||||||||||||
Sbjct: 35060593 ggagaggcaattgctatgagtaaaagatcaccagagaagctgtttgtgctgctagacatg 35060534

                                             
Query: 550      tatgagataatgtgtgaacttcaaacaga 578
                ||||| |||||||||||||||||| ||||
Sbjct: 35060533 tatgaaataatgtgtgaacttcaagcaga 35060505



 Score =  192 bits (97), Expect = 1e-45
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                            
Query: 224      acagcgaagctcgtgcttcagctttggagtcgagtttgaagaacttgggtgttgagaaac 283
                |||||||||| ||||| || ||||| ||||| |||||||||| |||||||||||| ||||
Sbjct: 35060927 acagcgaagcccgtgcctctgctttagagtcaagtttgaagagcttgggtgttgaaaaac 35060868

                                                                            
Query: 284      tgagtaaagatgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaatt 343
                |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 35060867 tgagcaaagatgaagtgcagaaaatgccatgggaaattttggagtctaaaatagggaatt 35060808

                                         
Query: 344      ggattcatttcatgcgaattgctgt 368
                ||||||| |||||||||||||||||
Sbjct: 35060807 ggattcacttcatgcgaattgctgt 35060783



 Score =  121 bits (61), Expect = 3e-24
 Identities = 83/89 (93%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                            
Query: 578      agattgacaccatctttgttggagaatcatgctctcaaatgcgtgactctgcactcagtc 637
                |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| 
Sbjct: 35059881 agattgacaccatctttgttggagaatcatgctctcaaatgcgtgagtctgcattgagtt 35059822

                                             
Query: 638      tgacaaaaatgtttagcacaaactgcaca 666
                |||| |||||| |||||||||||||||||
Sbjct: 35059821 tgac-aaaatgcttagcacaaactgcaca 35059794



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 94/110 (85%)
 Strand = Plus / Minus

                                                                            
Query: 118      gtatacagccctcctgcacttattgagcccaagtttgttcctttgcttgcgaaattggca 177
                ||||||||||| ||||| ||||||||||| | |||  ||||||| || || ||||| |||
Sbjct: 35061479 gtatacagcccccctgctcttattgagccaaggttcattccttttctggctaaattagca 35061420

                                                                  
Query: 178      caacagctggtccaagctggatgccaacagcaatgtgcagaaatatacag 227
                |||||| |||| ||||| ||||||||||| |||||  |||||||||||||
Sbjct: 35061419 caacagttggtacaagcgggatgccaacaacaatgctcagaaatatacag 35061370
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>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete
             sequence
          Length = 112897

 Score =  208 bits (105), Expect = 2e-50
 Identities = 183/209 (87%)
 Strand = Plus / Minus

                                                                         
Query: 370   aaacttcttttcgctggggaacgccagctctgtgaccaagtttttgaatgtagccaatct 429
             ||||||||||| || | |||||| ||||| |||||||| |||||||| || || ||||||
Sbjct: 15418 aaacttctttttgccgcggaacgtcagctttgtgaccaggtttttgagtgcagtcaatct 15359

                                                                         
Query: 430   ttgagagataagtgtttttctgcaataaccaagaacagtttggctactctactcagcttt 489
             ||||| |||||||| ||| ||  |||||| | ||| ||||||||||| ||||||||||||
Sbjct: 15358 ttgagggataagtgctttgctcaaataactaggaatagtttggctacactactcagcttt 15299

                                                                         
Query: 490   ggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgttctgctagacatg 549
             || ||||||||||||||||| ||||||||||| |||||  ||||||| ||||||||||||
Sbjct: 15298 ggagaggcaattgctatgagtaaaagatcaccagagaagctgtttgtgctgctagacatg 15239

                                          
Query: 550   tatgagataatgtgtgaacttcaaacaga 578
             ||||| |||||||||||||||||| ||||
Sbjct: 15238 tatgaaataatgtgtgaacttcaagcaga 15210



 Score =  200 bits (101), Expect = 4e-48
 Identities = 134/145 (92%)
 Strand = Plus / Minus

                                                                         
Query: 224   acagcgaagctcgtgcttcagctttggagtcgagtttgaagaacttgggtgttgagaaac 283
             |||||||||| ||||| || ||||| ||||| |||||||||| |||||||||||| ||||
Sbjct: 15632 acagcgaagcccgtgcctctgctttagagtcaagtttgaagagcttgggtgttgaaaaac 15573

                                                                         
Query: 284   tgagtaaagatgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaatt 343
             |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 15572 tgagcaaagatgaagtgcagaaaatgccttgggaaattttggagtctaaaatagggaatt 15513

                                      
Query: 344   ggattcatttcatgcgaattgctgt 368
             ||||||| |||||||||||||||||
Sbjct: 15512 ggattcacttcatgcgaattgctgt 15488



 Score =  121 bits (61), Expect = 3e-24
 Identities = 83/89 (93%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                         
Query: 578   agattgacaccatctttgttggagaatcatgctctcaaatgcgtgactctgcactcagtc 637
             |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| 
Sbjct: 14586 agattgacaccatctttgttggagaatcatgctctcaaatgcgtgagtctgcattgagtt 14527

                                          
Query: 638   tgacaaaaatgtttagcacaaactgcaca 666
             |||| |||||| |||||||||||||||||
Sbjct: 14526 tgac-aaaatgcttagcacaaactgcaca 14499



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 94/110 (85%)
 Strand = Plus / Minus

                                                                         
Query: 118   gtatacagccctcctgcacttattgagcccaagtttgttcctttgcttgcgaaattggca 177
             ||||||||||| ||||| ||||||||||| | |||  ||||||| || || ||||| |||
Sbjct: 16185 gtatacagcccccctgctcttattgagccaaggttcattccttttctggctaaattagca 16126

                                                               
Query: 178   caacagctggtccaagctggatgccaacagcaatgtgcagaaatatacag 227
             |||||| |||| ||||| ||||||||||| |||||  |||||||||||||
Sbjct: 16125 caacagttggtacaagcgggatgccaacaacaatgctcagaaatatacag 16076
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>emb|AL732343.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0913C04, complete
             sequence
          Length = 94152

 Score =  208 bits (105), Expect = 2e-50
 Identities = 183/209 (87%)
 Strand = Plus / Minus

                                                                         
Query: 370   aaacttcttttcgctggggaacgccagctctgtgaccaagtttttgaatgtagccaatct 429
             ||||||||||| || | |||||| ||||| |||||||| |||||||| || || ||||||
Sbjct: 92418 aaacttctttttgccgcggaacgtcagctttgtgaccaggtttttgagtgcagtcaatct 92359

                                                                         
Query: 430   ttgagagataagtgtttttctgcaataaccaagaacagtttggctactctactcagcttt 489
             ||||| |||||||| ||| ||  |||||| | ||| ||||||||||| ||||||||||||
Sbjct: 92358 ttgagggataagtgctttgctcaaataactaggaatagtttggctacactactcagcttt 92299

                                                                         
Query: 490   ggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgttctgctagacatg 549
             || ||||||||||||||||| ||||||||||| |||||  ||||||| ||||||||||||
Sbjct: 92298 ggagaggcaattgctatgagtaaaagatcaccagagaagctgtttgtgctgctagacatg 92239

                                          
Query: 550   tatgagataatgtgtgaacttcaaacaga 578
             ||||| |||||||||||||||||| ||||
Sbjct: 92238 tatgaaataatgtgtgaacttcaagcaga 92210



 Score =  200 bits (101), Expect = 4e-48
 Identities = 134/145 (92%)
 Strand = Plus / Minus

                                                                         
Query: 224   acagcgaagctcgtgcttcagctttggagtcgagtttgaagaacttgggtgttgagaaac 283
             |||||||||| ||||| || ||||| ||||| |||||||||| |||||||||||| ||||
Sbjct: 92632 acagcgaagcccgtgcctctgctttagagtcaagtttgaagagcttgggtgttgaaaaac 92573

                                                                         
Query: 284   tgagtaaagatgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaatt 343
             |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 92572 tgagcaaagatgaagtgcagaaaatgccttgggaaattttggagtctaaaatagggaatt 92513

                                      
Query: 344   ggattcatttcatgcgaattgctgt 368
             ||||||| |||||||||||||||||
Sbjct: 92512 ggattcacttcatgcgaattgctgt 92488



 Score =  121 bits (61), Expect = 3e-24
 Identities = 83/89 (93%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                         
Query: 578   agattgacaccatctttgttggagaatcatgctctcaaatgcgtgactctgcactcagtc 637
             |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| 
Sbjct: 91586 agattgacaccatctttgttggagaatcatgctctcaaatgcgtgagtctgcattgagtt 91527

                                          
Query: 638   tgacaaaaatgtttagcacaaactgcaca 666
             |||| |||||| |||||||||||||||||
Sbjct: 91526 tgac-aaaatgcttagcacaaactgcaca 91499



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 94/110 (85%)
 Strand = Plus / Minus

                                                                         
Query: 118   gtatacagccctcctgcacttattgagcccaagtttgttcctttgcttgcgaaattggca 177
             ||||||||||| ||||| ||||||||||| | |||  ||||||| || || ||||| |||
Sbjct: 93185 gtatacagcccccctgctcttattgagccaaggttcattccttttctggctaaattagca 93126

                                                               
Query: 178   caacagctggtccaagctggatgccaacagcaatgtgcagaaatatacag 227
             |||||| |||| ||||| ||||||||||| |||||  |||||||||||||
Sbjct: 93125 caacagttggtacaagcgggatgccaacaacaatgctcagaaatatacag 93076
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
              complete sequence
          Length = 145391

 Score =  208 bits (105), Expect = 2e-50
 Identities = 183/209 (87%)
 Strand = Plus / Minus

                                                                          
Query: 370    aaacttcttttcgctggggaacgccagctctgtgaccaagtttttgaatgtagccaatct 429
              ||||||||||| || | |||||| ||||| |||||||| |||||||| || || ||||||
Sbjct: 119760 aaacttctttttgccgcggaacgtcagctttgtgaccaggtttttgagtgcagtcaatct 119701

                                                                          
Query: 430    ttgagagataagtgtttttctgcaataaccaagaacagtttggctactctactcagcttt 489
              ||||| |||||||| ||| ||  |||||| | ||| ||||||||||| ||||||||||||
Sbjct: 119700 ttgagggataagtgctttgctcaaataactaggaatagtttggctacactactcagcttt 119641

                                                                          
Query: 490    ggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgttctgctagacatg 549
              || ||||||||||||||||| ||||||||||| |||||  ||||||| ||||||||||||
Sbjct: 119640 ggagaggcaattgctatgagtaaaagatcaccagagaagctgtttgtgctgctagacatg 119581

                                           
Query: 550    tatgagataatgtgtgaacttcaaacaga 578
              ||||| |||||||||||||||||| ||||
Sbjct: 119580 tatgaaataatgtgtgaacttcaagcaga 119552



 Score =  192 bits (97), Expect = 1e-45
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                          
Query: 224    acagcgaagctcgtgcttcagctttggagtcgagtttgaagaacttgggtgttgagaaac 283
              |||||||||| ||||| || ||||| ||||| |||||||||| |||||||||||| ||||
Sbjct: 119974 acagcgaagcccgtgcctctgctttagagtcaagtttgaagagcttgggtgttgaaaaac 119915

                                                                          
Query: 284    tgagtaaagatgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaatt 343
              |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 119914 tgagcaaagatgaagtgcagaaaatgccatgggaaattttggagtctaaaatagggaatt 119855

                                       
Query: 344    ggattcatttcatgcgaattgctgt 368
              ||||||| |||||||||||||||||
Sbjct: 119854 ggattcacttcatgcgaattgctgt 119830



 Score =  121 bits (61), Expect = 3e-24
 Identities = 83/89 (93%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 578    agattgacaccatctttgttggagaatcatgctctcaaatgcgtgactctgcactcagtc 637
              |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| 
Sbjct: 118928 agattgacaccatctttgttggagaatcatgctctcaaatgcgtgagtctgcattgagtt 118869

                                           
Query: 638    tgacaaaaatgtttagcacaaactgcaca 666
              |||| |||||| |||||||||||||||||
Sbjct: 118868 tgac-aaaatgcttagcacaaactgcaca 118841



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 94/110 (85%)
 Strand = Plus / Minus

                                                                          
Query: 118    gtatacagccctcctgcacttattgagcccaagtttgttcctttgcttgcgaaattggca 177
              ||||||||||| ||||| ||||||||||| | |||  ||||||| || || ||||| |||
Sbjct: 120526 gtatacagcccccctgctcttattgagccaaggttcattccttttctggctaaattagca 120467

                                                                
Query: 178    caacagctggtccaagctggatgccaacagcaatgtgcagaaatatacag 227
              |||||| |||| ||||| ||||||||||| |||||  |||||||||||||
Sbjct: 120466 caacagttggtacaagcgggatgccaacaacaatgctcagaaatatacag 120417
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>gb|AY108407.1| Zea mays PCO110242 mRNA sequence
          Length = 1245

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 77/90 (85%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                       
Query: 577 gagattgacaccatctttgttggagaatcatgctctcaaatgcgtgactctgcactcagt 636
           |||||||| ||||| || |||||||||||| | || |||||||| ||||||||||| |||
Sbjct: 8   gagattgataccattttcgttggagaatcaggttcgcaaatgcgcgactctgcactgagt 67

                                         
Query: 637 ctgacaaaaatgtttagcacaaactgcaca 666
            | || |||||| ||||||||||| |||||
Sbjct: 68  ttaac-aaaatgcttagcacaaacagcaca 96
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>ref|NM_120434.3| Arabidopsis thaliana protein binding AT5G03540 mRNA, complete cds
          Length = 2197

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                        
Query: 478  ctactcagctttggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgtt 537
            ||||| |||||||| || || || || | |||||| ||||| || || || |||||||| 
Sbjct: 983  ctacttagctttggggatgctatagccaggagcaagagatctccagaaaagttgtttgta 1042

                                                           
Query: 538  ctgctagacatgtatgagataatgtgtgaacttcaaacagagattga 584
            ||  |||||||||||||||||||| | || ||||| |||||||||||
Sbjct: 1043 ctcttagacatgtatgagataatgcgggagcttcatacagagattga 1089



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                       
Query: 262 aagaacttgggtgttgagaaactgagtaaagatgaagtgcagaaaatgccttgggagatt 321
           ||||| ||||| ||||| ||||| || ||||| || || ||||  ||||  |||||  ||
Sbjct: 767 aagaaattgggagttgaaaaacttagcaaagaggatgtccagaggatgcagtgggaagtt 826

                                                          
Query: 322 ttggagtctaaaataggaaattggattcatttcatgcgaattgctgt 368
           |||||| | ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 827 ttggaggccaaaattggaaattggatccatttcatgcgcattgctgt 873
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                          
Query: 294    tgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaattggattcattt 353
              |||||||||||||| || ||  ||  ||||||||||||||| ||||||||| ||||||||
Sbjct: 133124 tgaagtgcagaaaaagcattaagaatttttggagtctaaaagaggaaattgtattcattt 133065

                             
Query: 354    catgcgaattgctgt 368
                || ||||||||||
Sbjct: 133064 tgtgtgaattgctgt 133050



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 468    tttggctactctactcagctttggcgag 495
              ||||||||| | ||||||||||||||||
Sbjct: 132918 tttggctacacgactcagctttggcgag 132891
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                            
Query: 294      tgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaattggattcattt 353
                |||||||||||||| || ||  ||  ||||||||||||||| ||||||||| ||||||||
Sbjct: 21440213 tgaagtgcagaaaaagcattaagaatttttggagtctaaaagaggaaattgtattcattt 21440154

                               
Query: 354      catgcgaattgctgt 368
                  || ||||||||||
Sbjct: 21440153 tgtgtgaattgctgt 21440139



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 468      tttggctactctactcagctttggcgag 495
                ||||||||| | ||||||||||||||||
Sbjct: 21440007 tttggctacacgactcagctttggcgag 21439980
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>gb|AY133751.1| Arabidopsis thaliana clone U20002 unknown protein (At5g03540) mRNA,
            complete cds
          Length = 1948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                        
Query: 478  ctactcagctttggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgtt 537
            ||||| |||||||| || || || || | |||||| ||||| || || || |||||||| 
Sbjct: 943  ctacttagctttggggatgctatagccaggagcaagagatctccagaaaagttgtttgta 1002

                                                           
Query: 538  ctgctagacatgtatgagataatgtgtgaacttcaaacagagattga 584
            ||  |||||||||||||||||||| | || ||||| |||||||||||
Sbjct: 1003 ctcttagacatgtatgagataatgcgggagcttcatacagagattga 1049



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                       
Query: 262 aagaacttgggtgttgagaaactgagtaaagatgaagtgcagaaaatgccttgggagatt 321
           ||||| ||||| ||||| ||||| || ||||| || || ||||  ||||  |||||  ||
Sbjct: 727 aagaaattgggagttgaaaaacttagcaaagaggatgtccagaggatgcagtgggaagtt 786

                                                          
Query: 322 ttggagtctaaaataggaaattggattcatttcatgcgaattgctgt 368
           |||||| | ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 787 ttggaggccaaaattggaaattggatccatttcatgcgcattgctgt 833
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>gb|AY072155.1| Arabidopsis thaliana unknown protein (At5g03540) mRNA, complete cds
          Length = 2214

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                        
Query: 478  ctactcagctttggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgtt 537
            ||||| |||||||| || || || || | |||||| ||||| || || || |||||||| 
Sbjct: 984  ctacttagctttggggatgctatagccaggagcaagagatctccagaaaagttgtttgta 1043

                                                           
Query: 538  ctgctagacatgtatgagataatgtgtgaacttcaaacagagattga 584
            ||  |||||||||||||||||||| | || ||||| |||||||||||
Sbjct: 1044 ctcttagacatgtatgagataatgcgggagcttcatacagagattga 1090



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                       
Query: 262 aagaacttgggtgttgagaaactgagtaaagatgaagtgcagaaaatgccttgggagatt 321
           ||||| ||||| ||||| ||||| || ||||| || || ||||  ||||  |||||  ||
Sbjct: 768 aagaaattgggagttgaaaaacttagcaaagaggatgtccagaggatgcagtgggaagtt 827

                                                          
Query: 322 ttggagtctaaaataggaaattggattcatttcatgcgaattgctgt 368
           |||||| | ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 828 ttggaggccaaaattggaaattggatccatttcatgcgcattgctgt 874
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>emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project)
          Length = 121552

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                          
Query: 262    aagaacttgggtgttgagaaactgagtaaagatgaagtgcagaaaatgccttgggagatt 321
              ||||| ||||| ||||| ||||| || ||||| || || ||||  ||||  |||||  ||
Sbjct: 105351 aagaaattgggagttgaaaaacttagcaaagaggatgtccagaggatgcagtgggaagtt 105410

                                                             
Query: 322    ttggagtctaaaataggaaattggattcatttcatgcgaattgctgt 368
              |||||| | ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 105411 ttggaggccaaaattggaaattggatccatttcatgcgcattgctgt 105457



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 83/102 (81%)
 Strand = Plus / Plus

                                                                          
Query: 478    ctactcagctttggcgaggcaattgctatgagcaaaagatcaccggagaaattgtttgtt 537
              ||||| |||||||| || || || || | |||||| ||||| || || || |||||||| 
Sbjct: 105644 ctacttagctttggggatgctatagccaggagcaagagatctccagaaaagttgtttgta 105703

                                                        
Query: 538    ctgctagacatgtatgagataatgtgtgaacttcaaacagag 579
              ||  |||||||||||||||||||| | || ||||| ||||||
Sbjct: 105704 ctcttagacatgtatgagataatgcgggagcttcatacagag 105745
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                            
Query: 294      tgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaattggattcattt 353
                |||||||||||||| || ||  ||  ||||||||||||||| ||||||||| ||||||||
Sbjct: 21433242 tgaagtgcagaaaaagcattaagaatttttggagtctaaaagaggaaattgtattcattt 21433183

                               
Query: 354      catgcgaattgctgt 368
                  || ||||||||||
Sbjct: 21433182 tgtgtgaattgctgt 21433168



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 468      tttggctactctactcagctttggcgag 495
                ||||||||| | ||||||||||||||||
Sbjct: 21433036 tttggctacacgactcagctttggcgag 21433009
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>dbj|AK065713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042L04, full
            insert sequence
          Length = 2743

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                        
Query: 294  tgaagtgcagaaaatgccttgggagattttggagtctaaaataggaaattggattcattt 353
            |||||||||||||| || ||  ||  ||||||||||||||| ||||||||| ||||||||
Sbjct: 1475 tgaagtgcagaaaaagcattaagaatttttggagtctaaaagaggaaattgtattcattt 1534

                           
Query: 354  catgcgaattgctgt 368
              || ||||||||||
Sbjct: 1535 tgtgtgaattgctgt 1549



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 468  tttggctactctactcagctttggcgag 495
            ||||||||| | ||||||||||||||||
Sbjct: 1681 tttggctacacgactcagctttggcgag 1708
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>ref|NM_124613.2| Arabidopsis thaliana protein binding AT5G52340 mRNA, complete cds
          Length = 2088

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                        
Query: 493  gaggcaattgctatgagcaaaagatcaccggagaaattgtttgttctgctagacatgtat 552
            ||||| |||||||  ||||| |||||||| || ||| ||||||||||| |||| ||||||
Sbjct: 1150 gaggctattgctaaaagcaagagatcacctgaaaaactgtttgttctgttagatatgtat 1209

                     
Query: 553  gagataatg 561
            || ||||||
Sbjct: 1210 gaaataatg 1218
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>dbj|AB019226.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24M7
          Length = 73999

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                         
Query: 493   gaggcaattgctatgagcaaaagatcaccggagaaattgtttgttctgctagacatgtat 552
             ||||| |||||||  ||||| |||||||| || ||| ||||||||||| |||| ||||||
Sbjct: 24314 gaggctattgctaaaagcaagagatcacctgaaaaactgtttgttctgttagatatgtat 24373

                      
Query: 553   gagataatg 561
             || ||||||
Sbjct: 24374 gaaataatg 24382



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 514   agatcaccggagaaattgtttgttctgctagacatgtatgagataatg 561
             ||||| ||||| ||| |||||||| |  |||| |||||||||||||||
Sbjct: 27776 agatcgccggaaaaagtgtttgttatcttagatatgtatgagataatg 27823
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>dbj|AK066482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069O21, full
            insert sequence
          Length = 2552

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 321  tttggagtctaaaataggaaattggattcatttcatgcgaattgctgtgaaact 374
            ||||||| ||||||| ||||| ||||| ||||| ||||||||||| || |||||
Sbjct: 1048 tttggaggctaaaattggaaactggatccattttatgcgaattgcggtcaaact 1101



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 88/110 (80%)
 Strand = Plus / Plus

                                                                        
Query: 475  actctactcagctttggcgaggcaattgctatgagcaaaagatcaccggagaaattgttt 534
            ||||| || |||||||| || ||  ||||||  |||||||| || || || || ||||||
Sbjct: 1202 actcttctaagctttggagatgccgttgctaaaagcaaaaggtctcctgaaaagttgttt 1261

                                                              
Query: 535  gttctgctagacatgtatgagataatgtgtgaacttcaaacagagattga 584
            ||  ||||||||||||| ||  |||||  |||||||||| | ||||||||
Sbjct: 1262 gtattgctagacatgtacgaagtaatgcatgaacttcaacccgagattga 1311
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>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0052H02, complete sequence
          Length = 159632

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 321   tttggagtctaaaataggaaattggattcatttcatgcgaattgc 365
             ||||||| ||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 25759 tttggaggctaaaattggaaactggatccattttatgcgaattgc 25715
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 321     tttggagtctaaaataggaaattggattcatttcatgcgaattgc 365
               ||||||| ||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 2745952 tttggaggctaaaattggaaactggatccattttatgcgaattgc 2745908
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 321     tttggagtctaaaataggaaattggattcatttcatgcgaattgc 365
               ||||||| ||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 2754983 tttggaggctaaaattggaaactggatccattttatgcgaattgc 2754939
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                           
Query: 511     aaaagatcaccggagaaattgtttgttctgctagacatgtatga 554
               ||||||||||| || ||||| |||||  ||||||||||||||||
Sbjct: 2989240 aaaagatcacctgaaaaattatttgtattgctagacatgtatga 2989197
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                           
Query: 511     aaaagatcaccggagaaattgtttgttctgctagacatgtatga 554
               ||||||||||| || ||||| |||||  ||||||||||||||||
Sbjct: 2989184 aaaagatcacctgaaaaattatttgtattgctagacatgtatga 2989141
to top
>emb|AL844498.4|CNS08CAV Oryza sativa chromosome 12, . BAC OSJNBb0059G18 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145661

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 511   aaaagatcaccggagaaattgtttgttctgctagacatgtatga 554
             ||||||||||| || ||||| |||||  ||||||||||||||||
Sbjct: 26862 aaaagatcacctgaaaaattatttgtattgctagacatgtatga 26905
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>emb|AL691431.20| Mouse DNA sequence from clone RP23-257P7 on chromosome 4 Contains the 5'
              end of a novel gene (2810031P15Rik), a ribosomal protein
              L10 (Rpl10) pseudogene, a ribosomal protein S6 (Rps6)
              pseudogene and two CpG islands, complete sequence
          Length = 199847

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 417    atgtagccaatctttgagagat 438
              ||||||||||||||||||||||
Sbjct: 186212 atgtagccaatctttgagagat 186233
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>gb|AC163041.3| Mus musculus BAC clone RP23-32K16 from chromosome 12, complete sequence
          Length = 254666

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 594   tgttggagaatcatgctctca 614
             |||||||||||||||||||||
Sbjct: 65432 tgttggagaatcatgctctca 65452
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>gb|AC156036.4| Mus musculus BAC clone RP23-341B16 from chromosome 12, complete sequence
          Length = 211424

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 594    tgttggagaatcatgctctca 614
              |||||||||||||||||||||
Sbjct: 122051 tgttggagaatcatgctctca 122031
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>gb|AC156037.6| Mus musculus BAC clone RP23-138L1 from chromosome 12, complete sequence
          Length = 217016

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 594    tgttggagaatcatgctctca 614
              |||||||||||||||||||||
Sbjct: 195070 tgttggagaatcatgctctca 195090
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>gb|AC130830.3| Mus musculus BAC clone RP23-474G1 from chromosome 12, complete sequence
          Length = 199958

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 594    tgttggagaatcatgctctca 614
              |||||||||||||||||||||
Sbjct: 130975 tgttggagaatcatgctctca 130995
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>gb|AC134560.5| Mus musculus BAC clone RP24-100B13 from chromosome 16, complete sequence
          Length = 175179

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 198    atgccaacagcaatgtgcaga 218
              |||||||||||||||||||||
Sbjct: 108528 atgccaacagcaatgtgcaga 108548
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>gb|AC153662.6| Mus musculus BAC clone RP23-24I10 from chromosome 12, complete sequence
          Length = 216041

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 594    tgttggagaatcatgctctca 614
              |||||||||||||||||||||
Sbjct: 141789 tgttggagaatcatgctctca 141809
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>gb|AC132472.3| Mus musculus BAC clone RP23-113B13 from chromosome 12, complete sequence
          Length = 214333

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 594    tgttggagaatcatgctctca 614
              |||||||||||||||||||||
Sbjct: 128749 tgttggagaatcatgctctca 128729
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>emb|CT030157.8| Mouse DNA sequence from clone RP24-316P8 on chromosome 12, complete
              sequence
          Length = 199971

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 594    tgttggagaatcatgctctca 614
              |||||||||||||||||||||
Sbjct: 144189 tgttggagaatcatgctctca 144169
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>gb|AC124772.4| Mus musculus BAC clone RP23-47P3 from 12, complete sequence
          Length = 218340

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 594   tgttggagaatcatgctctca 614
             |||||||||||||||||||||
Sbjct: 62456 tgttggagaatcatgctctca 62476
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>gb|AC163633.4| Mus musculus BAC clone RP24-177N8 from chromosome 12, complete sequence
          Length = 178326

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 594   tgttggagaatcatgctctca 614
             |||||||||||||||||||||
Sbjct: 69951 tgttggagaatcatgctctca 69931
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>emb|AL732396.11| Mouse DNA sequence from clone RP23-93M14 on chromosome X, complete
             sequence
          Length = 173254

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 427   tctttgagagataagtgtttt 447
             |||||||||||||||||||||
Sbjct: 14557 tctttgagagataagtgtttt 14537
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>ref|NM_124614.1| Arabidopsis thaliana protein binding AT5G52350 mRNA, complete cds
          Length = 1644

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 514 agatcaccggagaaattgtttgttctgctagacatgtatgagataatg 561
           ||||| ||||| ||| |||||||| |  |||| |||||||||||||||
Sbjct: 841 agatcgccggaaaaagtgtttgttatcttagatatgtatgagataatg 888
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>gb|AC093197.2| Drosophila melanogaster clone BACR25N15, complete sequence
          Length = 191907

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    agtaaagatgaagtgcagaa 305
              ||||||||||||||||||||
Sbjct: 180380 agtaaagatgaagtgcagaa 180399
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>gb|AC140340.3| Mus musculus BAC clone RP24-260O19 from chromosome 14, complete
             sequence
          Length = 168454

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   aacgccagctctgtgaccaa 408
             ||||||||||||||||||||
Sbjct: 78161 aacgccagctctgtgaccaa 78142
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>gb|BC021774.1| Mus musculus cDNA clone IMAGE:4238277, partial cds
          Length = 2140

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 259 ttgaagaacttgggtgttga 278
           ||||||||||||||||||||
Sbjct: 958 ttgaagaacttgggtgttga 977
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>gb|AC112142.4| Mus musculus BAC clone RP23-4P23 from chromosome 14, complete sequence
          Length = 230847

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    aacgccagctctgtgaccaa 408
              ||||||||||||||||||||
Sbjct: 188019 aacgccagctctgtgaccaa 188000
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>gb|AC104964.12| Homo sapiens chromosome 8, clone RP11-981G7, complete sequence
          Length = 212226

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 483   cagctttggcgaggcaattg 502
             ||||||||||||||||||||
Sbjct: 76438 cagctttggcgaggcaattg 76457
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>emb|AL109733.1|HSJ537P22 Human DNA sequence from clone RP4-537P22 on chromosome Xq21.31-22.2,
             complete sequence
          Length = 115863

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   tttgaagaacttgggtgttg 277
             ||||||||||||||||||||
Sbjct: 52368 tttgaagaacttgggtgttg 52387
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>emb|AL031665.19|HS545L17 Human DNA sequence from clone RP4-545L17 on chromosome 20p12.2-13
              Contains the 5' end of the RAD21L1 gene for RAD21-like 1
              (S. pombe), the C20orf46 gene, a novel gene, the PSMF1 gene
              for proteasome (prosome, macropain) inhibitor subunit 1
              (PI31), the ACTGP3 gene for gamma actin pseudogene 3 and
              three CpG islands, complete sequence
          Length = 145437

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    taaaataggaaattggattc 349
              ||||||||||||||||||||
Sbjct: 126861 taaaataggaaattggattc 126880
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>emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in linkage group 5,
             complete sequence
          Length = 142808

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   ataagtgtttttctgcaata 456
             ||||||||||||||||||||
Sbjct: 27339 ataagtgtttttctgcaata 27320
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>emb|CR931728.1| Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE
          Length = 115300

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   tttgagagataagtgttttt 448
             ||||||||||||||||||||
Sbjct: 79795 tttgagagataagtgttttt 79776
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>gb|AE014181.1| Mus musculus piebald deletion region section 9 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    aacgccagctctgtgaccaa 408
              ||||||||||||||||||||
Sbjct: 286347 aacgccagctctgtgaccaa 286328
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>ref|NM_136185.2| Drosophila melanogaster CG10651-RA (CG10651), mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 agtaaagatgaagtgcagaa 305
           ||||||||||||||||||||
Sbjct: 463 agtaaagatgaagtgcagaa 482
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>dbj|AK165449.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F530004J10 product:unclassifiable, full
            insert sequence
          Length = 2798

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  ttgaagaacttgggtgttga 278
            ||||||||||||||||||||
Sbjct: 1627 ttgaagaacttgggtgttga 1646
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>gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome 16, complete sequence
          Length = 244730

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 393   ccagctctgtgaccaagtttttga 416
             |||||||||| |||||||||||||
Sbjct: 93127 ccagctctgtcaccaagtttttga 93150
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>gb|AC093044.1| Drosophila melanogaster, chromosome 2L, region 38A-38B, BAC clone
              BACR10H13, complete sequence
          Length = 165585

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    agtaaagatgaagtgcagaa 305
              ||||||||||||||||||||
Sbjct: 160794 agtaaagatgaagtgcagaa 160775
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>dbj|AK049490.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430017B21
            product:unclassifiable, full insert sequence
          Length = 3933

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 559  atgtgtgaacttcaaacaga 578
            ||||||||||||||||||||
Sbjct: 1539 atgtgtgaacttcaaacaga 1520
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>dbj|AK048733.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230029D21
            product:unclassifiable, full insert sequence
          Length = 2976

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 559  atgtgtgaacttcaaacaga 578
            ||||||||||||||||||||
Sbjct: 1985 atgtgtgaacttcaaacaga 1966
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>emb|BX511021.9| Zebrafish DNA sequence from clone DKEY-16P21 in linkage group 3,
             complete sequence
          Length = 235632

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   taagtgtttttctgcaataa 457
             ||||||||||||||||||||
Sbjct: 28257 taagtgtttttctgcaataa 28276
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>gb|AC064874.4| Homo sapiens BAC clone RP11-680O16 from 2, complete sequence
          Length = 160655

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 404   accaagtttttgaatgtagccaat 427
             ||||||||||| ||||||||||||
Sbjct: 66639 accaagttttttaatgtagccaat 66616
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>gb|AC102461.15| Mus musculus chromosome 8, clone RP24-319H6, complete sequence
          Length = 169510

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 632   tcagtctgacaaaaatgtttagca 655
             |||||||||||||| |||||||||
Sbjct: 28991 tcagtctgacaaaattgtttagca 29014
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>gb|BT024329.1| Drosophila melanogaster IP10611 full insert cDNA
          Length = 1065

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 286 agtaaagatgaagtgcagaa 305
           ||||||||||||||||||||
Sbjct: 485 agtaaagatgaagtgcagaa 504
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>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ttgaagaacttgggtgttga 278
             ||||||||||||||||||||
Sbjct: 54312 ttgaagaacttgggtgttga 54331
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>gb|AC155253.1| Mus musculus BAC clone RP24-172G9 from 17, complete sequence
          Length = 160193

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   atgtgtgaacttcaaacaga 578
             ||||||||||||||||||||
Sbjct: 66731 atgtgtgaacttcaaacaga 66712
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>gb|AC174800.2| Mus musculus BAC clone CH36-125B10 from chromosome 17, complete
             sequence
          Length = 178741

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 559   atgtgtgaacttcaaacaga 578
             ||||||||||||||||||||
Sbjct: 96155 atgtgtgaacttcaaacaga 96136
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>gb|AE003665.4| Drosophila melanogaster chromosome 2L, section 74 of 83 of the complete
              sequence
          Length = 157875

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 286    agtaaagatgaagtgcagaa 305
              ||||||||||||||||||||
Sbjct: 136125 agtaaagatgaagtgcagaa 136106
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>gb|AC006215.1|AC006215 Drosophila melanogaster, chromosome 2L, region 38C1-38C2, P1 clones
             DS01096 and DS00956, complete sequence
          Length = 106735

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   agtaaagatgaagtgcagaa 305
             ||||||||||||||||||||
Sbjct: 93523 agtaaagatgaagtgcagaa 93542
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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 268     ttgggtgttgagaaactgagtaaa 291
               |||||| |||||||||||||||||
Sbjct: 1119272 ttgggtcttgagaaactgagtaaa 1119249
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>emb|CT030652.14| Mouse DNA sequence from clone RP23-48G20 on chromosome 17, complete
            sequence
          Length = 221351

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 559  atgtgtgaacttcaaacaga 578
            ||||||||||||||||||||
Sbjct: 8480 atgtgtgaacttcaaacaga 8461


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,134,911
Number of Sequences: 3902068
Number of extensions: 6134911
Number of successful extensions: 117394
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117046
Number of HSP's gapped (non-prelim): 336
length of query: 666
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 643
effective length of database: 17,143,297,704
effective search space: 11023140423672
effective search space used: 11023140423672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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