ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9p04 |
|---|---|
| Clone Library Name | barley_pub |
>RUBB_SECCE (Q43831) RuBisCO large subunit-binding protein subunit beta,| chloroplast (60 kDa chaperonin subunit beta) (CPN-60 beta) (Fragment) Length = 499 Score = 29.3 bits (64), Expect = 3.3 Identities = 12/12 (100%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LKICAIKAPGFG Sbjct: 224 LKICAIKAPGFG 235
>CH60C_ARATH (Q93ZM7) Chaperonin CPN60-like 2, mitochondrial precursor| (HSP60-like 2) Length = 572 Score = 28.9 bits (63), Expect = 4.4 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LK+CAIKAPGFG Sbjct: 301 LKVCAIKAPGFG 312
>CH60_PORGI (P42375) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 545 Score = 28.9 bits (63), Expect = 4.4 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LKICA+KAPGFG Sbjct: 271 LKICAVKAPGFG 282
>CH60_BACTN (Q8A6P8) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 545 Score = 28.9 bits (63), Expect = 4.4 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LKICA+KAPGFG Sbjct: 271 LKICAVKAPGFG 282
>CH60_BACFR (Q64QU2) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 545 Score = 28.9 bits (63), Expect = 4.4 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LKICA+KAPGFG Sbjct: 271 LKICAVKAPGFG 282
>CH602_PARUW (Q6MBZ5) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 540 Score = 28.5 bits (62), Expect = 5.7 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LK+CA+KAPGFG Sbjct: 271 LKVCAVKAPGFG 282
>CH602_METCA (Q607Q3) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 542 Score = 28.5 bits (62), Expect = 5.7 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LK+CA+KAPGFG Sbjct: 271 LKVCAVKAPGFG 282
>CH60_EUGGR (Q39727) Chaperonin CPN60, mitochondrial precursor (HSP 60)| Length = 569 Score = 28.5 bits (62), Expect = 5.7 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LK+CA+KAPGFG Sbjct: 284 LKVCAVKAPGFG 295
>CH60_BACFO (P81284) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 543 Score = 28.5 bits (62), Expect = 5.7 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LK+CA+KAPGFG Sbjct: 270 LKVCAVKAPGFG 281
>CH62_CUCMA (Q05046) Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)| Length = 575 Score = 28.1 bits (61), Expect = 7.4 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CAIKAPGFG Sbjct: 302 IKVCAIKAPGFG 313
>CH61_CUCMA (Q05045) Chaperonin CPN60-1, mitochondrial precursor (HSP60-1)| Length = 575 Score = 28.1 bits (61), Expect = 7.4 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CAIKAPGFG Sbjct: 302 IKVCAIKAPGFG 313
>CH60A_ARATH (P29197) Chaperonin CPN60, mitochondrial precursor (HSP60)| Length = 577 Score = 28.1 bits (61), Expect = 7.4 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CAIKAPGFG Sbjct: 301 IKVCAIKAPGFG 312
>CH60B_ARATH (Q8L7B5) Chaperonin CPN60-like 1, mitochondrial precursor| (HSP60-like 1) Length = 585 Score = 27.7 bits (60), Expect = 9.7 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CA+KAPGFG Sbjct: 302 IKVCAVKAPGFG 313
>CH60_ACIAD (Q6F8P6) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 544 Score = 27.7 bits (60), Expect = 9.7 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CA+KAPGFG Sbjct: 271 IKVCAVKAPGFG 282
>CH60_BRANA (P35480) Chaperonin CPN60, mitochondrial precursor| Length = 587 Score = 27.7 bits (60), Expect = 9.7 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CA+KAPGFG Sbjct: 304 IKVCAVKAPGFG 315
>CH60_XYLFT (Q87BC0) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 547 Score = 27.7 bits (60), Expect = 9.7 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CA+KAPGFG Sbjct: 271 IKVCAVKAPGFG 282
>CH60_XYLFA (Q9PFP2) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 547 Score = 27.7 bits (60), Expect = 9.7 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CA+KAPGFG Sbjct: 271 IKVCAVKAPGFG 282
>CH60_BORGA (Q660M1) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 545 Score = 27.7 bits (60), Expect = 9.7 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LK+CAIK+PGFG Sbjct: 270 LKVCAIKSPGFG 281
>CH60_BORBU (P27575) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 545 Score = 27.7 bits (60), Expect = 9.7 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 LK+CAIK+PGFG Sbjct: 270 LKVCAIKSPGFG 281
>CH62_MAIZE (Q43298) Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)| Length = 576 Score = 27.7 bits (60), Expect = 9.7 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CA+KAPGFG Sbjct: 304 IKVCAVKAPGFG 315
>CH61_MAIZE (P29185) Chaperonin CPN60-1, mitochondrial precursor (HSP60-1)| Length = 577 Score = 27.7 bits (60), Expect = 9.7 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +2 Query: 2 LKICAIKAPGFG 37 +K+CA+KAPGFG Sbjct: 304 IKVCAVKAPGFG 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,236,472 Number of Sequences: 219361 Number of extensions: 10875 Number of successful extensions: 397 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 396 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 397 length of database: 80,573,946 effective HSP length: 0 effective length of database: 80,573,946 effective search space used: 1933774704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
