ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9o24 |
|---|---|
| Clone Library Name | barley_pub |
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 60.1 bits (144), Expect = 4e-09 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = +1 Query: 10 KXXAFHGLCAMVAANPTGAVSSLVHVCQACASWNEIKSEGLHNEVSQILNGYKQMFGAAG 189 K AF G+C M+ NP G V + C A ASW K + L + +IL+G+K G Sbjct: 807 KDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDD-LRDMFYKILHGFKDQVGEEN 865 Query: 190 WEQCMSTLEPAVVQRLAR-YGV 252 W+Q P + +RLA YGV Sbjct: 866 WQQFSEQFPPLLKERLAAFYGV 887
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 59.7 bits (143), Expect = 6e-09 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = +1 Query: 10 KXXAFHGLCAMVAANPTGAVSSLVHVCQACASWNEIKSEGLHNEVSQILNGYKQMFGAAG 189 K AF G+C M+ NP G V + C A ASW K + L + +IL+G+K G Sbjct: 817 KDSAFRGICMMIGVNPGGVVQDFIFFCDAVASWVSPKDD-LRDMFYKILHGFKDQVGEDN 875 Query: 190 WEQCMSTLEPAVVQRLAR-YGV 252 W+Q P + +RLA YGV Sbjct: 876 WQQFSEQFPPLLKERLAAFYGV 897
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = +1 Query: 10 KXXAFHGLCAMVAANPTGAVSSLVHVCQACASWNEIKSEGLHNEVSQILNGYKQMFGAAG 189 K AF G+C M++ NP+G + + C A ASW K + L + +IL+G+K G Sbjct: 810 KDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDD-LRDMFCKILHGFKNQVGDEN 868 Query: 190 WEQCMSTLEPAVVQRLAR-YGV 252 W + + +RLA YGV Sbjct: 869 WRRFSDQFPLPLKERLAAFYGV 890
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = +1 Query: 10 KXXAFHGLCAMVAANPTGAVSSLVHVCQACASWNEIKSEGLHNEVSQILNGYKQMFGAAG 189 K AF G+C M++ NP+G + + C A ASW K + L + +IL+G+K G Sbjct: 810 KDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDD-LRDMFCKILHGFKNQVGDEN 868 Query: 190 WEQCMSTLEPAVVQRLAR-YGV 252 W + + +RLA YGV Sbjct: 869 WRRFSDQFPLPLKERLAAFYGV 890
>IMB2_SCHPO (O14089) Putative importin beta-2 subunit (Karyopherin beta-2| subunit) (Importin 104) (Transportin) (TRN) Length = 910 Score = 37.7 bits (86), Expect = 0.023 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +1 Query: 10 KXXAFHGLCAMVAANPTGAVSSLVHVCQACASWNEIKSEGLHNEVSQILNGYKQMF-GAA 186 K AF G C ++A NP A+S L+ + C + E S L + +IL G ++F G A Sbjct: 834 KDSAFRGFCNILACNPQ-ALSYLLPMFVLCVAEYENPSAELRDMFQKILQGSVELFNGKA 892 Query: 187 GWEQCMSTLEPAVVQRLARYGV 252 W+ L Q A+YGV Sbjct: 893 SWQASPEVL----AQIQAQYGV 910
>WBS14_CAEEL (P41846) WBSCR14 protein homolog (Mlx interactor)| Length = 1009 Score = 32.7 bits (73), Expect = 0.73 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = -1 Query: 565 PTRQKQTSSRRNSIPRLSHTTLLSRPVYNQRTAYNTSQ---PRQAESTNQSHHHHIGNHT 395 PTRQ + + + S +TL S+P Y T Y+T+ P + TNQ H H H+ Sbjct: 404 PTRQSSAITSQMLMLSQSASTLSSQPQYATSTHYSTNNSFLPIRNTMTNQHHLGHTSQHS 463
>POM1_SCHPO (Q09690) Dual specificity protein kinase pom1 (EC 2.7.12.1)| Length = 1087 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -1 Query: 553 KQTSSRRNSIPRLSHTTLLSRPVYNQRTAYNTSQPRQAESTNQSHHH 413 +Q +S RNSI RLS+ ++ + P+ + +SQ S N S HH Sbjct: 130 RQKNSPRNSIHRLSNISIGNNPI-----DFESSQQNNPSSLNTSSHH 171
>ZFN2_ARATH (O48772) Zinc finger CCCH type domain-containing protein ZFN2| Length = 453 Score = 30.8 bits (68), Expect = 2.8 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = -1 Query: 496 SRPVYNQRTAYNTSQPRQAESTNQSHHHHIGNHTMC 389 S P+YN +T ++S T SHHH C Sbjct: 232 SNPIYNMKTQLDSSSSASVAVTVTSHHHSFSERAEC 267
>XYLA_STAXY (P27157) Xylose isomerase (EC 5.3.1.5)| Length = 439 Score = 30.0 bits (66), Expect = 4.7 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = -3 Query: 125 SLLISFQLAQAWHTWTSELTAPVGFAATIAHRPWNAXXXLE 3 S L+ F +A WHT+T++L+ P F +A R W++ +E Sbjct: 37 SELLRFSVAY-WHTFTADLSDP--FGVGVAERDWDSLDEME 74
>HISX_AZOBR (P18786) Putative histidinol dehydrogenase (EC 1.1.1.23) (HDH)| (Fragment) Length = 128 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 313 GAEHQKRREGHEIGQSRRSVRC 378 G +HQ+ REG E RR VRC Sbjct: 67 GGQHQQGREGQEKASGRRHVRC 88
>MYO9B_MOUSE (Q9QY06) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2114 Score = 29.3 bits (64), Expect = 8.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 24 PWSVRNGGSKPHRGCELTSPRMPGLCKLE 110 PW ++ G S P+ G + SPR P + LE Sbjct: 1875 PWPLKLGFSSPYEGVRIKSPRTPVVQDLE 1903
>HMPB_DROME (P31264) Homeotic protein proboscipedia| Length = 782 Score = 29.3 bits (64), Expect = 8.0 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 481 NQRTAYNTSQPRQAESTNQSHHHHIGN 401 +Q + QP Q + N H HH+GN Sbjct: 615 HQTVVFQQQQPHQPAAINHQHMHHLGN 641 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,025,925 Number of Sequences: 219361 Number of extensions: 1793194 Number of successful extensions: 5397 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5346 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
