ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9o24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y18343.1|OSA18343 Oryza sativa mRNA for transportin, partial 161 3e-36
2dbj|AK100077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
3dbj|AK069073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 7e-34
4gb|BT019032.1| Zea mays clone Contig541.F mRNA sequence 121 3e-24
5emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7ref|XM_474473.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
8gb|BC081583.1| Danio rerio caspase 8, mRNA (cDNA clone MGC:92075... 42 1.9
9ref|NM_131510.2| Danio rerio caspase 8 (casp8), mRNA 42 1.9
10gb|AF273220.1|AF273220 Danio rerio caspase-8 (casp8) mRNA, compl... 42 1.9
11gb|AY518735.1| Danio rerio clone IMAGE:3728416 caspase-8 mRNA, p... 42 1.9
12gb|AY518734.1| Danio rerio clone IMAGE:2351947 caspase-8 mRNA, c... 42 1.9
13gb|AC036222.23| Homo sapiens chromosome 17, clone RP11-433M22, c... 40 7.7
14gb|AC131920.7| Mus musculus chromosome 14, clone RP23-450N9, com... 40 7.7
15gb|AC132418.3| Mus musculus BAC clone RP23-251N2 from chromosome... 40 7.7
16emb|CR954193.3| Medicago truncatula chromosome 5 clone mth2-27a1... 40 7.7
17gb|AC124970.21| Medicago truncatula clone mth2-7j19, complete se... 40 7.7
18emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 i... 40 7.7
19gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, comple... 40 7.7
20gb|AC182392.2| Pan troglodytes BAC clone CH251-499D13 from chrom... 40 7.7
21gb|AC009963.11| Homo sapiens BAC clone RP11-368F12 from 2, compl... 40 7.7
22gb|AC007909.8| Homo sapiens chromosome 16 clone RP11-515G11, com... 40 7.7
23emb|AL935311.10| Zebrafish DNA sequence from clone CH211-241N16,... 40 7.7
24gb|U43503.2|SCU43503 Saccharomyces cerevisiae chromosome XVI cos... 40 7.7
25emb|AL591703.14| Mouse DNA sequence from clone RP23-448P12 on ch... 40 7.7
26dbj|AB011072.1| Saccharomyces cerevisiae gene for Apg6p, complet... 40 7.7
27dbj|AB009345.1| Oryctolagus cuniculus mRNA for retinal oxidase, ... 40 7.7 
>emb|Y18343.1|OSA18343 Oryza sativa mRNA for transportin, partial
          Length = 1603

 Score =  161 bits (81), Expect = 3e-36
 Identities = 199/239 (83%)
 Strand = Plus / Plus

                                                                        
Query: 10   aaanagnatgcgttccatggtctgtgcgcaatggtggcagcaaaccccacaggggctgtg 69
            ||| || |||| ||||||||||| || |||||||| ||||||||||| || || ||||||
Sbjct: 895  aaagaggatgcattccatggtctatgtgcaatggtagcagcaaacccaactggagctgtg 954

                                                                        
Query: 70   agctcactagtccacgtatgccaggcctgtgcaagttggaatgagatcaaaagcgaaggt 129
             | ||||||       | ||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 955  ggttcactaacttttatctgccaggcctgtgcaagttggaacgagataaagagtgaaggt 1014

                                                                        
Query: 130  ttgcacaatgaagtgtcccagattttgaatggctacaagcagatgttcggagctgccggc 189
            || ||||||||||||| ||||||||||||||| |||||||||||| |||||  ||  || 
Sbjct: 1015 ttacacaatgaagtgtgccagattttgaatggatacaagcagatgctcggaagtgggggt 1074

                                                                       
Query: 190  tgggaacagtgcatgtccaccctggaaccggcagtggtgcagagattagcgagatacgg 248
            ||||||||||||||||||||||| || || || || || ||||||||||  ||||||||
Sbjct: 1075 tgggaacagtgcatgtccaccctagagccagcggtcgttcagagattaggcagatacgg 1133
to top
>dbj|AK100077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F11, full
            insert sequence
          Length = 3436

 Score =  161 bits (81), Expect = 3e-36
 Identities = 199/239 (83%)
 Strand = Plus / Plus

                                                                        
Query: 10   aaanagnatgcgttccatggtctgtgcgcaatggtggcagcaaaccccacaggggctgtg 69
            ||| || |||| ||||||||||| || |||||||| ||||||||||| || || ||||||
Sbjct: 2606 aaagaggatgcattccatggtctatgtgcaatggtagcagcaaacccaactggagctgtg 2665

                                                                        
Query: 70   agctcactagtccacgtatgccaggcctgtgcaagttggaatgagatcaaaagcgaaggt 129
             | ||||||       | ||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 2666 ggttcactaacttttatctgccaggcctgtgcaagttggaacgagataaagagtgaaggt 2725

                                                                        
Query: 130  ttgcacaatgaagtgtcccagattttgaatggctacaagcagatgttcggagctgccggc 189
            || ||||||||||||| ||||||||||||||| |||||||||||| |||||  ||  || 
Sbjct: 2726 ttacacaatgaagtgtgccagattttgaatggatacaagcagatgctcggaagtgggggt 2785

                                                                       
Query: 190  tgggaacagtgcatgtccaccctggaaccggcagtggtgcagagattagcgagatacgg 248
            ||||||||||||||||||||||| || || || || || ||||||||||  ||||||||
Sbjct: 2786 tgggaacagtgcatgtccaccctagagccagcggtcgttcagagattaggcagatacgg 2844
to top
>dbj|AK069073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005B05, full
            insert sequence
          Length = 3763

 Score =  153 bits (77), Expect = 7e-34
 Identities = 140/161 (86%)
 Strand = Plus / Plus

                                                                        
Query: 88   tgccaggcctgtgcaagttggaatgagatcaaaagcgaaggtttgcacaatgaagtgtcc 147
            ||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||| |
Sbjct: 3014 tgccaggcctgtgcaagttggaacgagataaagagtgaaggtttacacaatgaagtgtgc 3073

                                                                        
Query: 148  cagattttgaatggctacaagcagatgttcggagctgccggctgggaacagtgcatgtcc 207
            |||||||||||||| |||||||||||| |||||  ||  || ||||||||||||||||||
Sbjct: 3074 cagattttgaatggatacaagcagatgctcggaagtgggggttgggaacagtgcatgtcc 3133

                                                     
Query: 208  accctggaaccggcagtggtgcagagattagcgagatacgg 248
            ||||| || || || || || ||||||||||  ||||||||
Sbjct: 3134 accctagagccagcggtcgttcagagattaggcagatacgg 3174
to top
>gb|BT019032.1| Zea mays clone Contig541.F mRNA sequence
          Length = 1009

 Score =  121 bits (61), Expect = 3e-24
 Identities = 130/153 (84%)
 Strand = Plus / Plus

                                                                       
Query: 19  gcgttccatggtctgtgcgcaatggtggcagcaaaccccacaggggctgtgagctcacta 78
           ||||| ||||| ||||| |||||||||||||||||||| ||||| || |   | ||| ||
Sbjct: 38  gcgtttcatggactgtgtgcaatggtggcagcaaaccctacaggagccgctggttcatta 97

                                                                       
Query: 79  gtccacgtatgccaggcctgtgcaagttggaatgagatcaaaagcgaaggtttgcacaat 138
           |   || | |||||||||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct: 98  gcttacatctgccaggcctgtgcaagttggactgagataaaaagcgaaggtcttcacaat 157

                                            
Query: 139 gaagtgtcccagattttgaatggctacaagcag 171
           || |||| ||||||| |||||||||||||||||
Sbjct: 158 gaggtgtgccagattctgaatggctacaagcag 190
to top
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19,
             complete sequence
          Length = 123272

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 133   cacaatgaagtgtcccagattttgaatggctacaagcag 171
             ||||||||||||| ||||||||||||||| |||||||||
Sbjct: 40348 cacaatgaagtgtgccagattttgaatggatacaagcag 40386



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 190   tgggaacagtgcatgtccaccctggaaccggcagtggtgcagagattagcgagatacgg 248
             ||||||||||||||||||||||| || || || || || ||||||||||  ||||||||
Sbjct: 40505 tgggaacagtgcatgtccaccctagagccagcggtcgttcagagattaggcagatacgg 40563



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 88    tgccaggcctgtgcaagttggaa 110
             |||||||||||||||||||||||
Sbjct: 40228 tgccaggcctgtgcaagttggaa 40250
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 133      cacaatgaagtgtcccagattttgaatggctacaagcag 171
                ||||||||||||| ||||||||||||||| |||||||||
Sbjct: 35415545 cacaatgaagtgtgccagattttgaatggatacaagcag 35415583



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 190      tgggaacagtgcatgtccaccctggaaccggcagtggtgcagagattagcgagatacgg 248
                ||||||||||||||||||||||| || || || || || ||||||||||  ||||||||
Sbjct: 35415702 tgggaacagtgcatgtccaccctagagccagcggtcgttcagagattaggcagatacgg 35415760



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 88       tgccaggcctgtgcaagttggaa 110
                |||||||||||||||||||||||
Sbjct: 35415425 tgccaggcctgtgcaagttggaa 35415447
to top
>ref|XM_474473.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3234

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 87/107 (81%)
 Strand = Plus / Plus

                                                                        
Query: 10   aaanagnatgcgttccatggtctgtgcgcaatggtggcagcaaaccccacaggggctgtg 69
            ||| || |||| ||||||||||| || |||||||| ||||||||||| || || ||||||
Sbjct: 2494 aaagaggatgcattccatggtctatgtgcaatggtagcagcaaacccaactggagctgtg 2553

                                                           
Query: 70   agctcactagtccacgtatgccaggcctgtgcaagttggaatgagat 116
             | ||||||       | ||||||||||||||||||||||| |||||
Sbjct: 2554 ggttcactaacttttatctgccaggcctgtgcaagttggaacgagat 2600
to top
>gb|BC081583.1| Danio rerio caspase 8, mRNA (cDNA clone MGC:92075 IMAGE:7046697),
            complete cds
          Length = 2056

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  gattttgaatggctacaagcagatg 174
            ||||||||| |||||||||||||||
Sbjct: 1506 gattttgaagggctacaagcagatg 1530
to top
>ref|NM_131510.2| Danio rerio caspase 8 (casp8), mRNA
          Length = 2056

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  gattttgaatggctacaagcagatg 174
            ||||||||| |||||||||||||||
Sbjct: 1506 gattttgaagggctacaagcagatg 1530
to top
>gb|AF273220.1|AF273220 Danio rerio caspase-8 (casp8) mRNA, complete cds
          Length = 1431

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  gattttgaatggctacaagcagatg 174
            ||||||||| |||||||||||||||
Sbjct: 1356 gattttgaagggctacaagcagatg 1380
to top
>gb|AY518735.1| Danio rerio clone IMAGE:3728416 caspase-8 mRNA, partial cds
          Length = 1635

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  gattttgaatggctacaagcagatg 174
            ||||||||| |||||||||||||||
Sbjct: 1119 gattttgaagggctacaagcagatg 1143
to top
>gb|AY518734.1| Danio rerio clone IMAGE:2351947 caspase-8 mRNA, complete cds
          Length = 1965

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  gattttgaatggctacaagcagatg 174
            ||||||||| |||||||||||||||
Sbjct: 1446 gattttgaagggctacaagcagatg 1470
to top
>gb|AC036222.23| Homo sapiens chromosome 17, clone RP11-433M22, complete sequence
          Length = 174965

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 313   ggagctgaacatcagaaaaggagggaag 340
             ||||||||| | ||||||||||||||||
Sbjct: 81087 ggagctgaataccagaaaaggagggaag 81060
to top
>gb|AC131920.7| Mus musculus chromosome 14, clone RP23-450N9, complete sequence
          Length = 201436

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   ctcaaaagtgtagtgtgact 514
             ||||||||||||||||||||
Sbjct: 42936 ctcaaaagtgtagtgtgact 42917
to top
>gb|AC132418.3| Mus musculus BAC clone RP23-251N2 from chromosome 18, complete sequence
          Length = 206588

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     aggggctgtgagctcactag 79
              ||||||||||||||||||||
Sbjct: 101283 aggggctgtgagctcactag 101264
to top
>emb|CR954193.3| Medicago truncatula chromosome 5 clone mth2-27a1, COMPLETE SEQUENCE
          Length = 127717

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   aagttggaatgagatcaaaa 121
             ||||||||||||||||||||
Sbjct: 43369 aagttggaatgagatcaaaa 43350
to top
>gb|AC124970.21| Medicago truncatula clone mth2-7j19, complete sequence
          Length = 128254

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   ttgaatggctacaagcagat 173
             ||||||||||||||||||||
Sbjct: 65118 ttgaatggctacaagcagat 65137
to top
>emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 in linkage group 10,
             complete sequence
          Length = 150791

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   gattgattggttgattctgc 442
             ||||||||||||||||||||
Sbjct: 82060 gattgattggttgattctgc 82041
to top
>gb|AC096766.3| Homo sapiens BAC clone RP11-678H22 from 4, complete sequence
          Length = 173836

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   gaagtgtcccagattttgaa 158
             ||||||||||||||||||||
Sbjct: 17196 gaagtgtcccagattttgaa 17215
to top
>gb|AC182392.2| Pan troglodytes BAC clone CH251-499D13 from chromosome 2, complete
             sequence
          Length = 159910

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   aaaaggagggaagggcatgagatt 351
             |||||||| |||||||||||||||
Sbjct: 64301 aaaaggagagaagggcatgagatt 64324
to top
>gb|AC009963.11| Homo sapiens BAC clone RP11-368F12 from 2, complete sequence
          Length = 190043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    aaaaggagggaagggcatgagatt 351
              |||||||| |||||||||||||||
Sbjct: 165549 aaaaggagagaagggcatgagatt 165526
to top
>gb|AC007909.8| Homo sapiens chromosome 16 clone RP11-515G11, complete sequence
          Length = 183149

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   agctgaacatcagaaaagga 334
             ||||||||||||||||||||
Sbjct: 88440 agctgaacatcagaaaagga 88459
to top
>emb|AL935311.10| Zebrafish DNA sequence from clone CH211-241N16, complete sequence
          Length = 162121

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   gattgattggttgattctgc 442
             ||||||||||||||||||||
Sbjct: 27437 gattgattggttgattctgc 27456
to top
>gb|U43503.2|SCU43503 Saccharomyces cerevisiae chromosome XVI cosmid 8209/8002
          Length = 38589

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 426   tgattggttgattctgcctg 445
             ||||||||||||||||||||
Sbjct: 13446 tgattggttgattctgcctg 13465
to top
>emb|AL591703.14| Mouse DNA sequence from clone RP23-448P12 on chromosome 2, complete
             sequence
          Length = 89080

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    ccccacaggggctgtgagctcact 77
             |||||||||||||||||| |||||
Sbjct: 11863 ccccacaggggctgtgaggtcact 11886
to top
>dbj|AB011072.1| Saccharomyces cerevisiae gene for Apg6p, complete cds
          Length = 1674

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 426  tgattggttgattctgcctg 445
            ||||||||||||||||||||
Sbjct: 1233 tgattggttgattctgcctg 1252
to top
>dbj|AB009345.1| Oryctolagus cuniculus mRNA for retinal oxidase, complete cds
          Length = 4599

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 139  gaagtgtcccagattttgaa 158
            ||||||||||||||||||||
Sbjct: 1691 gaagtgtcccagattttgaa 1710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,385,324
Number of Sequences: 3902068
Number of extensions: 4385324
Number of successful extensions: 75228
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75171
Number of HSP's gapped (non-prelim): 57
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top