ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags9o14 |
|---|---|
| Clone Library Name | barley_pub |
>SDK2_HUMAN (Q58EX2) Protein sidekick-2 precursor| Length = 2170 Score = 33.9 bits (76), Expect = 0.095 Identities = 18/66 (27%), Positives = 34/66 (51%) Frame = +2 Query: 101 YALDSGNLCPHGESSCINHLGPMINNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAP 280 +AL S ++ + S ++ L P + FR+ AT + + + S++TL+ PD AP Sbjct: 1445 WALHSASVSHNASSFIVDRLKPF-TSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAP 1503 Query: 281 RMFNFT 298 + + T Sbjct: 1504 TILSVT 1509
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 32.7 bits (73), Expect = 0.21 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +2 Query: 101 YALDSGNLCPHGESSCINHLGPMINNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAP 280 +AL S ++ + + ++ L P + FR+ AT + + + S++TL+ PD AP Sbjct: 1451 WALHSASVSHNASAFTVDRLKPF-TSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAP 1509 Query: 281 RMFNFT 298 + + T Sbjct: 1510 TILSVT 1515
>MOL2B_HUMAN (Q86TA1) Mps one binder kinase activator-like 2B (Mob1 homolog 2b)| (Protein Mob3B) Length = 216 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +1 Query: 274 GTQDV*LHQNAQADVQSDVGEKAAVQCHGGD 366 GTQ LH+ AQA + S V KAAVQ G+ Sbjct: 24 GTQRFELHKRAQASLNSGVDLKAAVQLPSGE 54
>VMSA_HBVIA (P24025) Major surface antigen precursor| Length = 388 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCRTCTTPAQGTSMYPSCC 300
>VMSA_HBVWO (P17399) Major surface antigen precursor| Length = 388 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCKTCTTPAQGTSMFPSCC 300
>VMSA_HBVWJ (P17398) Major surface antigen precursor| Length = 388 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCKTCTTPAQGTSMFPSCC 300
>VMSA_HBVWI (P17397) Major surface antigen precursor| Length = 388 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCKTCTTPAQGTSMFPSCC 300
>POU1_DUGJA (P31370) POU domain protein 1 (DjPOU1)| Length = 559 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = +2 Query: 149 INHLGPMINNVSFRLPATTPLLQAHYHG--NMSSISTLRELPDR--APRMFN 292 ++H+G N++ + PL+ + Y+ N S+IS+ LP R AP +FN Sbjct: 4 VSHIGSSHFNINSSIKTALPLINSQYNSLVNESTISSNINLPFRLDAPSLFN 55
>SYFB_HAEDU (Q7VLG3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/52 (30%), Positives = 29/52 (55%) Frame = +2 Query: 56 PLLRPVPANVHEHLXYALDSGNLCPHGESSCINHLGPMINNVSFRLPATTPL 211 P+++PVPA + + + + + CPH +L +I NV+ + AT+PL Sbjct: 191 PVIKPVPATLSAPIEIDIQAPSACPH-------YLARIIKNVN--VNATSPL 233
>MOL2B_MOUSE (Q8VE04) Mps one binder kinase activator-like 2B (Mob1 homolog 2b)| Length = 216 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +1 Query: 274 GTQDV*LHQNAQADVQSDVGEKAAVQCHGGD 366 GTQ LH+ AQA + S V +AAVQ G+ Sbjct: 24 GTQRFELHKRAQASLNSGVDLRAAVQLPNGE 54
>VMSA_HBVIL (P12911) Major surface antigen precursor| Length = 388 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PGS T S P CT TSL S C Sbjct: 268 VCPLIPGSSTTSTGPCKTCTTPAQGTSLIPSCC 300
>ITA1_RAT (P18614) Integrin alpha-1 precursor (Laminin and collagen receptor)| (VLA-1) (CD49a antigen) Length = 1180 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +2 Query: 32 NLTSLQPHPLLRP-VPANVHEHLXYALDSGNLCPHGESSCINHL 160 NLT + P+L +P +VHEH+ +A D GN + CI+ L Sbjct: 779 NLTDPENGPVLDDALPNSVHEHIPFAKDCGN-----KERCISDL 817
>VMSA_HBVA4 (Q05496) Major surface antigen precursor| Length = 399 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PGS T S P CT TS++ S C Sbjct: 279 VCPLLPGSTTTSTGPCKTCTTLAQGTSMFPSCC 311
>VMSA_HBVAD (P31868) Major surface antigen| Length = 226 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PG+ T S P CT TS++ S C Sbjct: 106 VCPLLPGTSTTSTGPCKTCTTPAQGTSMFPSCC 138
>FTSK_VIBCH (Q84I33) DNA translocase ftsK| Length = 960 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%) Frame = +2 Query: 149 INHLGPMINNVSFRLPATTPLLQAHYHGNMSSISTLRELPDR----APRMFNFTKMRKPT 316 I+ P + + +P + H+ + L+ P R AP Sbjct: 247 IDEPAPSLRRFNIHMPEERDVPDIHFEPQVEPKVELKPEPPRQREPAPHFSRVAAQNTQV 306 Query: 317 SRATSVRRLRYNATVEIVFQSPVLADTYA 403 +S R +++AT+E + Q L D YA Sbjct: 307 EPVSSARTQQWDATIEELEQQARLVDDYA 335
>CCHL_NEUCR (P14187) Cytochrome c heme lyase (EC 4.4.1.17) (CCHL)| (Holocytochrome-C synthase) Length = 346 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/65 (32%), Positives = 28/65 (43%) Frame = -2 Query: 352 IVPQPSHRRRSGRRLAHFGEVKHPGCPVR*LPQRANAAHVTVVVRLEQWCRCGQPEGDII 173 +VP PSH+ LA G V P CP+ A +AH V E P + Sbjct: 16 VVP-PSHKD-----LAASGAVPPPSCPMHNKTMDALSAHKPVTPAPEPTPAAAAPSKCPV 69 Query: 172 NHGSQ 158 NHG++ Sbjct: 70 NHGAK 74
>VMSA_HBVYW (P03138) Major surface antigen precursor| Length = 388 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PGS T S P C TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCRTCMTTAQGTSMYPSCC 300
>VMSA_HBVDR (P03140) Major surface antigen precursor| Length = 399 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PG+ T S P CT TS++ S C Sbjct: 279 VCPLLPGTSTTSTGPCKTCTIPAQGTSMFPSCC 311
>VMSA_HBVD4 (P12934) Major surface antigen precursor| Length = 399 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PG+ T S P CT TS++ S C Sbjct: 279 VCPLLPGTSTTSTGPCKTCTIPAQGTSMFPSCC 311
>VMSA_HBVDN (P30019) Major surface antigen| Length = 226 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PG+ T S P CT TS++ S C Sbjct: 106 VCPLLPGTSTTSTGPCKTCTIPAQGTSMFPSCC 138
>VMSA_HBVAR (P31869) Major surface antigen| Length = 226 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -1 Query: 398 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 306 +CPL PG+ T S P CT TS++ S C Sbjct: 106 VCPLLPGTSTTSTGPCKTCTIPAQGTSMFPSCC 138
>V2R_HUMAN (P30518) Vasopressin V2 receptor (Renal-type arginine vasopressin| receptor) (Antidiuretic hormone receptor) (AVPR V2) Length = 371 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Frame = -2 Query: 367 DLHRGIVPQPSHR---RRSGRRLAHFGEVKHPGCPVR*LPQRANAAHVTVVV 221 ++H +VP PS R RR GRR GE H V A +T+V+ Sbjct: 231 EIHASLVPGPSERPGGRRRGRRTGSPGEGAHVSAAV------AKTVRMTLVI 276
>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein) Length = 1104 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -2 Query: 394 VR*HRALEHDLHRGIVPQPSHRRRSGRRLAHFGEVKHPG 278 +R + +E G PQ +H+ G +A G HPG Sbjct: 951 LRARQQMEQQQQHGQTPQQAHQHTGGPGMAPLGATGHPG 989
>SERC_XANAC (Q8PLY7) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 361 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -2 Query: 229 VVVRLEQWCRCGQPEGDIINHGSQM 155 V+VR + R GQP DI N+ SQ+ Sbjct: 206 VIVRRDLLERAGQPRADIFNYASQV 230
>ABCA2_MOUSE (P41234) ATP-binding cassette sub-family A member 2 (ATP-binding| cassette transporter 2) (ATP-binding cassette 2) Length = 2434 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +3 Query: 57 RCCARCRPTFMSTSXMPLTRATSVHMANHPA*IIWDP*LIMSPSGCPQRHHCS 215 +CC P F+ + R T V P +P L SPSGCP+ CS Sbjct: 1200 KCCGS--PLFLKGAYGDGYRLTLVKQPAEPG-TSQEPGLASSPSGCPRLSSCS 1249 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,994,259 Number of Sequences: 219361 Number of extensions: 1216232 Number of successful extensions: 3010 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2929 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3010 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
