ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.088
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.088
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.088
4gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds 44 0.35
5gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequ... 40 5.4
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
7gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, r... 40 5.4
8gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14... 40 5.4
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
10emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057... 40 5.4
11gb|AC130712.4| Mus musculus BAC clone RP23-125B4 from 1, complet... 40 5.4

>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 357    cggtggagatcgtgttccagagc 379
              |||||||||||||||||||||||
Sbjct: 167364 cggtggagatcgtgttccagagc 167386



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 357     cggtggagatcgtgttccagagc 379
               |||||||||||||||||||||||
Sbjct: 8850863 cggtggagatcgtgttccagagc 8850841



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 357     cggtggagatcgtgttccagagc 379
               |||||||||||||||||||||||
Sbjct: 8922526 cggtggagatcgtgttccagagc 8922504



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>gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds
          Length = 2156

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 356  acggtggagatcgtgttccagagcccggtg 385
            ||||||||||||||| |||||| |||||||
Sbjct: 1381 acggtggagatcgtgctccagaacccggtg 1410



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>gb|AC151314.2| Xenopus tropicalis clone ISB-195A7, complete sequence
          Length = 108847

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tttgggacccatgattaata 176
             ||||||||||||||||||||
Sbjct: 98197 tttgggacccatgattaata 98178



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 339      ggctgcggtacaatgccacggtgg 362
                ||||| ||||||||||||||||||
Sbjct: 16376890 ggctgtggtacaatgccacggtgg 16376913



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>gb|AC008313.3|AC008313 Drosophila melanogaster, chromosome 3R, region 84D-84E, BAC clone
             BACR11D12, complete sequence
          Length = 189596

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   taacatgagcagcattagca 251
             ||||||||||||||||||||
Sbjct: 63289 taacatgagcagcattagca 63308



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>gb|AE003676.4| Drosophila melanogaster chromosome 3R, section 14 of 118 of the complete
              sequence
          Length = 267607

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    taacatgagcagcattagca 251
              ||||||||||||||||||||
Sbjct: 139828 taacatgagcagcattagca 139847



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 339      ggctgcggtacaatgccacggtgg 362
                ||||| ||||||||||||||||||
Sbjct: 16330123 ggctgtggtacaatgccacggtgg 16330146



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>emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057_E03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127989

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 339   ggctgcggtacaatgccacggtgg 362
             ||||| ||||||||||||||||||
Sbjct: 75501 ggctgtggtacaatgccacggtgg 75478



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>gb|AC130712.4| Mus musculus BAC clone RP23-125B4 from 1, complete sequence
          Length = 186518

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 123    tctgtccacatggcgaatcatcct 146
              ||||||||||||| ||||||||||
Sbjct: 110719 tctgtccacatggtgaatcatcct 110696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,574,775
Number of Sequences: 3902068
Number of extensions: 2574775
Number of successful extensions: 39997
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39932
Number of HSP's gapped (non-prelim): 65
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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