ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9o10 |
|---|---|
| Clone Library Name | barley_pub |
>CC47_MOUSE (Q9D024) Coiled-coil domain-containing protein 47 precursor| (Adipocyte-specific protein 4) Length = 483 Score = 54.3 bits (129), Expect = 3e-07 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 19/178 (10%) Frame = +2 Query: 110 PGKDTITFEVVMNEEAMDHXXXXXXXXXXXXXXQKEERDLQKFASVLASAPAGKKWVADE 289 P D + +V MN+E MD QKE +DL +F S + A K + D Sbjct: 240 PVSDQVQIKVTMNDEDMDTYVFAVGTRKALLRLQKEMQDLSEFCSDKPKSGA-KYGLPDS 298 Query: 290 LSVVAESKEVAGDMITEAVLDQVLGEKAFEKMGKWFISLHFSDQLAG------------- 430 L++++E EV TE ++D + K S+HFSDQ +G Sbjct: 299 LAILSEMGEV-----TEGMMDTKMVHFLTHYADK-IESVHFSDQFSGPKIMQEEGQPLKL 352 Query: 431 -SYKKVLSFKFVLPDANN-----MADMTKLVALVPFYIDLVGRYKLSSHARSKTDAAR 586 K+ L F F +P + N M + L+ +V + ID +++L+ + K D R Sbjct: 353 PDTKRTLLFTFNVPGSGNTYPKDMESLLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410
>CCD47_XENLA (Q6AZI2) Coiled-coil domain-containing protein 47 precursor| Length = 489 Score = 54.3 bits (129), Expect = 3e-07 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 19/178 (10%) Frame = +2 Query: 110 PGKDTITFEVVMNEEAMDHXXXXXXXXXXXXXXQKEERDLQKFASVLASAPAGKKWVADE 289 P D + +V MN+E MD QKE +DL +F + A K + + Sbjct: 246 PVCDQVQIKVTMNDEDMDTYVFSVGTRKTLIRLQKEMQDLSEFCGDKPKS-AAKMGLPES 304 Query: 290 LSVVAESKEVAGDMITEAVLDQVLGEKAFEKMGKWFISLHFSDQLAG------------- 430 ++V+AE EV T+ ++D + K S+HFSDQ +G Sbjct: 305 MAVLAEMGEV-----TDGIMDTKMVHYLTNYSDK-IESIHFSDQFSGPKIMQEEGQPLKL 358 Query: 431 -SYKKVLSFKFVLPDANN-----MADMTKLVALVPFYIDLVGRYKLSSHARSKTDAAR 586 KK L F F +P + N M + L+ +V + ID V +++L+ + K D R Sbjct: 359 PETKKTLLFTFNVPGSGNASVKDMEALLPLMNMVIYSIDKVKKFRLNREGKQKADKNR 416
>CCD47_RAT (Q5U2X6) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 53.5 bits (127), Expect = 4e-07 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 19/178 (10%) Frame = +2 Query: 110 PGKDTITFEVVMNEEAMDHXXXXXXXXXXXXXXQKEERDLQKFASVLASAPAGKKWVADE 289 P D + +V MN+E MD QKE +DL +F S + A K + D Sbjct: 240 PVSDQVQIKVTMNDEDMDTYVFAVGTRKALLRLQKEMQDLSEFCSDKPKSGA-KYGLPDS 298 Query: 290 LSVVAESKEVAGDMITEAVLDQVLGEKAFEKMGKWFISLHFSDQLAG------------- 430 L++++E EV TE ++D + K S+HFSDQ +G Sbjct: 299 LAILSEMGEV-----TEGMMDTKMVHFLTHYADK-IESVHFSDQFSGPKIMQEEGQPLKL 352 Query: 431 -SYKKVLSFKFVLPDANN-----MADMTKLVALVPFYIDLVGRYKLSSHARSKTDAAR 586 K+ L F F +P + N M + L+ +V + ID +++L+ + K D R Sbjct: 353 PDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410
>CCD47_BOVIN (Q3ZC50) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 52.8 bits (125), Expect = 7e-07 Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 19/178 (10%) Frame = +2 Query: 110 PGKDTITFEVVMNEEAMDHXXXXXXXXXXXXXXQKEERDLQKFASVLASAPAGKKWVADE 289 P D + +V MN+E MD QKE +DL +F S + A K + D Sbjct: 240 PVSDQVQIKVTMNDEDMDTYVFAVGARKALVRLQKEMQDLSEFCSDKPKSGA-KYGLPDS 298 Query: 290 LSVVAESKEVAGDMITEAVLDQVLGEKAFEKMGKWFISLHFSDQLAG------------- 430 L++++E EV M+ +L S+HFSDQ +G Sbjct: 299 LAILSEMGEVTDGMMDTKML------HFLTHYADKIESIHFSDQFSGPKIMQEEGQPLKL 352 Query: 431 -SYKKVLSFKFVLPDANN-----MADMTKLVALVPFYIDLVGRYKLSSHARSKTDAAR 586 K+ L F F +P + N M + L+ +V + ID +++L+ + K D R Sbjct: 353 PDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410
>CCD47_BRARE (Q66I12) Coiled-coil domain-containing protein 47 precursor| Length = 486 Score = 52.8 bits (125), Expect = 7e-07 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 19/178 (10%) Frame = +2 Query: 110 PGKDTITFEVVMNEEAMDHXXXXXXXXXXXXXXQKEERDLQKFASVLASAPAGKKWVADE 289 P D + V +N+E MD QKE +DL +F + A K + D Sbjct: 243 PTCDQVQVRVTLNDEDMDTFVFAVGSRKAMARMQKEMQDLSEFCGDKPKSGA-KYGIPDS 301 Query: 290 LSVVAESKEVAGDMITEAVLDQVLGEKAFEKMGKWFISLHFSDQLAG------------- 430 L++++E EV T+ V+D + K S+HFSDQ +G Sbjct: 302 LTILSEMGEV-----TDGVMDNKMVHYLTSHADK-IESIHFSDQFSGPKVMQEEGQPLKL 355 Query: 431 -SYKKVLSFKFVLPDANN-----MADMTKLVALVPFYIDLVGRYKLSSHARSKTDAAR 586 KK L F F +P N M + L+ +V + ID V + +L+ + K D R Sbjct: 356 PETKKTLLFTFNVPGMGNTSPKDMDSLLPLMNMVIYSIDKVKKLRLNREGKQKADRNR 413
>CCD47_HUMAN (Q96A33) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 52.4 bits (124), Expect = 1e-06 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 19/178 (10%) Frame = +2 Query: 110 PGKDTITFEVVMNEEAMDHXXXXXXXXXXXXXXQKEERDLQKFASVLASAPAGKKWVADE 289 P D + +V MN+E MD QKE +DL +F S + A K + D Sbjct: 240 PVSDQVQIKVTMNDEDMDTYVFAVGTRKALVRLQKEMQDLSEFCSDKPKSGA-KYGLPDS 298 Query: 290 LSVVAESKEVAGDMITEAVLDQVLGEKAFEKMGKWFISLHFSDQLAG------------- 430 L++++E EV T+ ++D + K S+HFSDQ +G Sbjct: 299 LAILSEMGEV-----TDGMMDTKMVHFLTHYADK-IESVHFSDQFSGPKIMQEEGQPLKL 352 Query: 431 -SYKKVLSFKFVLPDANN-----MADMTKLVALVPFYIDLVGRYKLSSHARSKTDAAR 586 K+ L F F +P + N M + L+ +V + ID +++L+ + K D R Sbjct: 353 PDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410
>CCD47_PONPY (Q5RCI4) Coiled-coil domain-containing protein 47 precursor| Length = 483 Score = 50.8 bits (120), Expect = 3e-06 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 19/178 (10%) Frame = +2 Query: 110 PGKDTITFEVVMNEEAMDHXXXXXXXXXXXXXXQKEERDLQKFASVLASAPAGKKWVADE 289 P D + +V MN+E M+ QKE +DL +F S + A K + D Sbjct: 240 PVSDQVQIKVTMNDEDMETYVFAVGTRKALVRLQKEMQDLSEFCSDKPKSGA-KYGLPDS 298 Query: 290 LSVVAESKEVAGDMITEAVLDQVLGEKAFEKMGKWFISLHFSDQLAG------------- 430 L++++E EV T+ ++D + K S+HFSDQ +G Sbjct: 299 LAILSEMGEV-----TDGMMDTKMVHFLTHYADK-IESVHFSDQFSGPKIMQEEGQPLKL 352 Query: 431 -SYKKVLSFKFVLPDANN-----MADMTKLVALVPFYIDLVGRYKLSSHARSKTDAAR 586 K+ L F F +P + N M + L+ +V + ID +++L+ + K D R Sbjct: 353 PDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410
>REPX_BACCE (Q4MKK8) Plasmid replication protein repX| Length = 435 Score = 33.1 bits (74), Expect = 0.61 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +2 Query: 212 KEERDLQKFASVLASAPAGKKW--VADELSVVAESKEVAGDMITEAVLDQV 358 K+E D+ KF SV+A P K+ + DE++ + E +E A + AVL+++ Sbjct: 345 KKEEDIVKFYSVVAGLPLPKRVSDIIDEITRIKEEREQANSKKSNAVLNKL 395
>REPX_BACC1 (Q74P24) Plasmid replication protein repX| Length = 435 Score = 33.1 bits (74), Expect = 0.61 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +2 Query: 212 KEERDLQKFASVLASAPAGKKW--VADELSVVAESKEVAGDMITEAVLDQV 358 K+E D+ KF SV+A P K+ + DE++ + E +E A + AVL+++ Sbjct: 345 KKEEDIVKFYSVVAGLPLPKRVSDIIDEITRIKEEREQANSKKSNAVLNKL 395
>REPX_BACAN (Q9X315) Plasmid replication protein repX| Length = 435 Score = 33.1 bits (74), Expect = 0.61 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = +2 Query: 212 KEERDLQKFASVLASAPAGKKW--VADELSVVAESKEVAGDMITEAVLDQV 358 K+E D+ KF SV+A P K+ + DE++ + E +E A + AVL+++ Sbjct: 345 KKEEDIVKFYSVVAGLPLPKRVSDIIDEITRIKEEREQANSKKSNAVLNKL 395
>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid| hormone receptor-associated protein complex 240 kDa component-like) Length = 2210 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = +2 Query: 344 VLDQVLGEKAFEKMGKWFISLHFSDQLAGSYKKVLS--FKFVLPDANNMADMTKLVALVP 517 +L++ L +K F ++GKWF+ + D+ + + LS F F L +N+ ++ P Sbjct: 129 LLERCLMDKNFVRIGKWFVRPYEKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQP 188 Query: 518 FYI 526 Y+ Sbjct: 189 IYL 191
>T240L_MOUSE (Q6JPI3) Thyroid hormone receptor-associated protein 2 (Thyroid| hormone receptor-associated protein complex 240 kDa component-like) Length = 2207 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = +2 Query: 344 VLDQVLGEKAFEKMGKWFISLHFSDQLAGSYKKVLS--FKFVLPDANNMADMTKLVALVP 517 +L++ L +K F ++GKWF+ + D+ + + LS F F L +N+ ++ P Sbjct: 129 LLERCLMDKNFVRIGKWFVRPYDKDEKPVNKSEHLSCAFTFFLHGESNVCTSVEIAQHQP 188 Query: 518 FYI 526 Y+ Sbjct: 189 IYL 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,708,703 Number of Sequences: 219361 Number of extensions: 1190831 Number of successful extensions: 3031 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3023 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
