ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9o07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192420.1| Oryza sativa (japonica cultivar-group), predic... 230 4e-57
2dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
3dbj|AK062263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 4e-57
4dbj|AK070411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
6dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
7gb|AY106113.1| Zea mays PCO152993 mRNA sequence 90 1e-14
8gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 70 9e-09
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
10ref|NM_118151.3| Arabidopsis thaliana CTP synthase/ catalytic AT... 56 1e-04
11ref|NM_102819.2| Arabidopsis thaliana CTP synthase/ catalytic AT... 56 1e-04
12ref|NM_192800.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
13emb|BX813942.1|CNS0AASW Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
14gb|BT013487.1| Lycopersicon esculentum clone 132171F, mRNA sequence 54 5e-04
15ref|NM_129042.1| Arabidopsis thaliana CTP synthase/ catalytic AT... 52 0.002
16gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 52 0.002
17emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, ... 50 0.008
18emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BA... 50 0.008
19dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.033
20dbj|AB230641.1| Aspergillus oryzae cDNA, contig sequence: AoEST7531 46 0.13
21dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 46 0.13
22dbj|AK102275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
23dbj|AK063965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
24ref|NM_112102.2| Arabidopsis thaliana EMB2742; CTP synthase/ cat... 42 2.0
25gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosom... 42 2.0
26gb|BC044325.1| Xenopus laevis cytidine 5'-triphosphate synthase,... 42 2.0
27ref|XM_735027.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 2.0
28gb|AC122168.14| Medicago truncatula clone mth2-4o4, complete seq... 42 2.0
29emb|AL356772.14| Human DNA sequence from clone RP11-47B24 on chr... 42 2.0
30emb|AL359715.12| Human DNA sequence from clone RP11-250B2 on chr... 42 2.0
31emb|AL136119.16| Human DNA sequence from clone RP11-113F5 on chr... 42 2.0
32gb|BT008360.1| Arabidopsis thaliana At3g12670 gene, complete cds 42 2.0
33gb|AY093110.1| Arabidopsis thaliana CTP-synthetase, putative (At... 42 2.0
34gb|AC069474.4|AC069474 Arabidopsis thaliana chromosome 3 BAC T2E... 42 2.0
35dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.0
36gb|BC081096.1| Xenopus laevis hypothetical LOC495047, mRNA (cDNA... 42 2.0
37gb|BC084164.1| Xenopus laevis hypothetical LOC495047, mRNA (cDNA... 42 2.0
38emb|CT485693.1| Xenopus tropicalis finished cDNA, clone TEgg031m17 42 2.0
39gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete... 40 8.0
40emb|CR956650.4| Pig DNA sequence from clone CH242-171I16 on chro... 40 8.0
41ref|XM_446506.1| Candida glabrata CBS138, CAGL0G03289g partial mRNA 40 8.0
42ref|XM_798842.1| Trypanosoma cruzi strain CL Brener cytidine tri... 40 8.0
43ref|XM_809018.1| Trypanosoma cruzi strain CL Brener cytidine tri... 40 8.0
44gb|AE014075.1| Escherichia coli CFT073, complete genome 40 8.0
45gb|CP000243.1| Escherichia coli UTI89, complete genome 40 8.0
46emb|AL158044.17| Human DNA sequence from clone RP11-264C14 on ch... 40 8.0
47emb|CR380953.1| Candida glabrata strain CBS138 chromosome G comp... 40 8.0
48emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 8.0
49gb|AC132213.1| Drosophila pseudoobscura FOSMID DPSF1-548A8 (Chi... 40 8.0
50gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete... 40 8.0
51gb|AC155936.7| Mus musculus 10 BAC RP24-397C20 (Roswell Park Can... 40 8.0
52gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, ... 40 8.0
53gb|AC091713.4| Papio anubis clone RP41-217F22, complete sequence 40 8.0
54gb|AC004135.1|AC004135 Genomic sequence for Arabidopsis thaliana... 40 8.0
55gb|AC139329.3| Mus musculus BAC clone RP24-317B10 from 17, compl... 40 8.0
56gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25... 40 8.0
57gb|AC126694.4| Mus musculus BAC clone RP23-310G20 from 17, compl... 40 8.0
58gb|U53396.1|RNU53396 Rattus norvegicus chromosome 10 microsatell... 40 8.0 
>ref|NM_192420.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1770

 Score =  230 bits (116), Expect = 4e-57
 Identities = 224/260 (86%)
 Strand = Plus / Plus

                                                                        
Query: 33   aagctgtatggcaatgctacctccatcgatgaaagacatcgacacagatatgaggtgaac 92
            ||||||||||| |||||||  | | | || |||||||||||||||||||||||||| || 
Sbjct: 1363 aagctgtatggtaatgctagattcgtagacgaaagacatcgacacagatatgaggtaaat 1422

                                                                        
Query: 93   cctgaaatggtcccagagcttgagaaggccggtctttcatttgttggcaaggatgaaagt 152
            ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1423 cctgaaatggtaccagagtttgagaaggccggactttcatttgttggcaaggatgagagt 1482

                                                                        
Query: 153  ggaaggcgcatggagatcattgagctaccgaagcatgtgttcttcatcggtgcacagttc 212
            ||||| ||||||||||| ||||| ||||| |  |||   || ||||| || | |||||||
Sbjct: 1483 ggaagacgcatggagattattgaactacccagtcataaatttttcattggagtacagttc 1542

                                                                        
Query: 213  catcccgaattcaagtcaaggccaggaaatccctctccacttttcttagggttaattgcg 272
            ||||| |||||||||||||| ||||| || || ||||||||||||||||| ||||| || 
Sbjct: 1543 catcctgaattcaagtcaagaccagggaagccatctccacttttcttaggattaatagca 1602

                                
Query: 273  gcagcatccggacagctaga 292
            |||||||| ||||| |||||
Sbjct: 1603 gcagcatctggacaactaga 1622
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>dbj|AK069482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O19, full
            insert sequence
          Length = 2451

 Score =  230 bits (116), Expect = 4e-57
 Identities = 224/260 (86%)
 Strand = Plus / Plus

                                                                        
Query: 33   aagctgtatggcaatgctacctccatcgatgaaagacatcgacacagatatgaggtgaac 92
            ||||||||||| |||||||  | | | || |||||||||||||||||||||||||| || 
Sbjct: 1590 aagctgtatggtaatgctagattcgtagacgaaagacatcgacacagatatgaggtaaat 1649

                                                                        
Query: 93   cctgaaatggtcccagagcttgagaaggccggtctttcatttgttggcaaggatgaaagt 152
            ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1650 cctgaaatggtaccagagtttgagaaggccggactttcatttgttggcaaggatgagagt 1709

                                                                        
Query: 153  ggaaggcgcatggagatcattgagctaccgaagcatgtgttcttcatcggtgcacagttc 212
            ||||| ||||||||||| ||||| ||||| |  |||   || ||||| || | |||||||
Sbjct: 1710 ggaagacgcatggagattattgaactacccagtcataaatttttcattggagtacagttc 1769

                                                                        
Query: 213  catcccgaattcaagtcaaggccaggaaatccctctccacttttcttagggttaattgcg 272
            ||||| |||||||||||||| ||||| || || ||||||||||||||||| ||||| || 
Sbjct: 1770 catcctgaattcaagtcaagaccagggaagccatctccacttttcttaggattaatagca 1829

                                
Query: 273  gcagcatccggacagctaga 292
            |||||||| ||||| |||||
Sbjct: 1830 gcagcatctggacaactaga 1849
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>dbj|AK062263.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H06, full
           insert sequence
          Length = 1288

 Score =  230 bits (116), Expect = 4e-57
 Identities = 224/260 (86%)
 Strand = Plus / Plus

                                                                       
Query: 33  aagctgtatggcaatgctacctccatcgatgaaagacatcgacacagatatgaggtgaac 92
           ||||||||||| |||||||  | | | || |||||||||||||||||||||||||| || 
Sbjct: 495 aagctgtatggtaatgctagattcgtagacgaaagacatcgacacagatatgaggtaaat 554

                                                                       
Query: 93  cctgaaatggtcccagagcttgagaaggccggtctttcatttgttggcaaggatgaaagt 152
           ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 555 cctgaaatggtaccagagtttgagaaggccggactttcatttgttggcaaggatgagagt 614

                                                                       
Query: 153 ggaaggcgcatggagatcattgagctaccgaagcatgtgttcttcatcggtgcacagttc 212
           ||||| ||||||||||| ||||| ||||| |  |||   || ||||| || | |||||||
Sbjct: 615 ggaagacgcatggagattattgaactacccagtcataaatttttcattggagtacagttc 674

                                                                       
Query: 213 catcccgaattcaagtcaaggccaggaaatccctctccacttttcttagggttaattgcg 272
           ||||| |||||||||||||| ||||| || || ||||||||||||||||| ||||| || 
Sbjct: 675 catcctgaattcaagtcaagaccagggaagccatctccacttttcttaggattaatagca 734

                               
Query: 273 gcagcatccggacagctaga 292
           |||||||| ||||| |||||
Sbjct: 735 gcagcatctggacaactaga 754
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>dbj|AK070411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023053C07, full
            insert sequence
          Length = 2466

 Score =  125 bits (63), Expect = 2e-25
 Identities = 229/283 (80%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                        
Query: 13   gccaataactgcaaatccgc-aagctgtatggcaatgctacctccatcgatgaaagacat 71
            |||||||  |||||||| || ||||||||||||||||| | ||   | |||||||| || 
Sbjct: 1572 gccaatacatgcaaatcagctaagctgtatggcaatgcaagctatgtagatgaaaggcac 1631

                                                                        
Query: 72   cgacacagatatgaggtgaaccctgaaatggtcccagagcttgagaaggccggtctttca 131
            || ||| ||||||||||||| ||||||||||| |||||  |||||||||| ||||| || 
Sbjct: 1632 cgccaccgatatgaggtgaatcctgaaatggttccagaatttgagaaggcaggtctctct 1691

                                                                        
Query: 132  tttgttggcaaggatgaaagtggaaggcgcatggagatcattgagctaccgaagcatgtg 191
            |||||||||| ||||||||| || |  ||||||||||| ||||||||||| |  |||  |
Sbjct: 1692 tttgttggcagggatgaaagcgggacacgcatggagataattgagctaccaactcatagg 1751

                                                                        
Query: 192  ttcttcatcggtgcacagttccatcccgaattcaagtcaaggccaggaaatccctctcca 251
            || ||  | || ||||| || ||||| |||||||||||||| || ||||| || || |||
Sbjct: 1752 ttttttgttggcgcacaatttcatcctgaattcaagtcaagacctggaaagccatcccca 1811

                                                       
Query: 252  cttttcttagggttaattgcggcagcatccggacagctagacc 294
            |||||| | || ||||| || ||  |||| |||||||| ||||
Sbjct: 1812 cttttcatgggattaatagcagcttcatcaggacagcttgacc 1854
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                            
Query: 93       cctgaaatggtcccagagcttgagaaggccggtctttcatttgttggcaaggatgaaagt 152
                ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 26513692 cctgaaatggtaccagagtttgagaaggccggactttcatttgttggcaaggatgagagt 26513751

                               
Query: 153      ggaaggcgcatggag 167
                ||||| |||||||||
Sbjct: 26513752 ggaagacgcatggag 26513766



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                         
Query: 206      acagttccatcccgaattcaagtcaaggccaggaaatccctctccacttttcttagg 262
                |||||||||||| |||||||||||||| ||||| || || |||||||||||||||||
Sbjct: 26513897 acagttccatcctgaattcaagtcaagaccagggaagccatctccacttttcttagg 26513953



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 63       gaaagacatcgacacagatatgaggt 88
                ||||||||||||||||||||||||||
Sbjct: 26513575 gaaagacatcgacacagatatgaggt 26513600



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 201      ggtgcacagttccatcccgaattcaagtcaag 232
                |||||||| |||||||| ||||||||||||||
Sbjct: 24495793 ggtgcacaattccatcctgaattcaagtcaag 24495762
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>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0006H05
          Length = 154821

 Score =  109 bits (55), Expect = 1e-20
 Identities = 70/75 (93%)
 Strand = Plus / Plus

                                                                          
Query: 93     cctgaaatggtcccagagcttgagaaggccggtctttcatttgttggcaaggatgaaagt 152
              ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 122311 cctgaaatggtaccagagtttgagaaggccggactttcatttgttggcaaggatgagagt 122370

                             
Query: 153    ggaaggcgcatggag 167
              ||||| |||||||||
Sbjct: 122371 ggaagacgcatggag 122385



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                       
Query: 206    acagttccatcccgaattcaagtcaaggccaggaaatccctctccacttttcttagg 262
              |||||||||||| |||||||||||||| ||||| || || |||||||||||||||||
Sbjct: 122516 acagttccatcctgaattcaagtcaagaccagggaagccatctccacttttcttagg 122572



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 63     gaaagacatcgacacagatatgaggt 88
              ||||||||||||||||||||||||||
Sbjct: 122194 gaaagacatcgacacagatatgaggt 122219
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>gb|AY106113.1| Zea mays PCO152993 mRNA sequence
          Length = 410

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 191 gttcttcatcggtgcacagttccatcccgaattcaagtcaaggccaggaaatccctctcc 250
           ||||||||||||||||||||||||||| ||||||||||| || ||||| || || |||||
Sbjct: 33  gttcttcatcggtgcacagttccatcctgaattcaagtcgagaccagggaagccatctcc 92

                        
Query: 251 acttttcttaggg 263
            ||||||||||||
Sbjct: 93  gcttttcttaggg 105
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                          
Query: 85     aggtgaaccctgaaatggtcccagagcttgagaaggccggtctttcatttgttggcaagg 144
              ||||||| ||||||||||| |||||  |||||||||| ||||| || |||||||||| ||
Sbjct: 116343 aggtgaatcctgaaatggttccagaatttgagaaggcaggtctctcttttgttggcaggg 116284

                     
Query: 145    atgaaag 151
              |||||||
Sbjct: 116283 atgaaag 116277



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                    
Query: 204    gcacagttccatcccgaattcaagtcaaggccaggaaatccctctccacttttc 257
              ||||| || ||||| |||||||||||||| || ||||| || || |||||||||
Sbjct: 116140 gcacaatttcatcctgaattcaagtcaagacctggaaagccatccccacttttc 116087
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Minus

                                                                            
Query: 85       aggtgaaccctgaaatggtcccagagcttgagaaggccggtctttcatttgttggcaagg 144
                ||||||| ||||||||||| |||||  |||||||||| ||||| || |||||||||| ||
Sbjct: 28332101 aggtgaatcctgaaatggttccagaatttgagaaggcaggtctctcttttgttggcaggg 28332042

                       
Query: 145      atgaaag 151
                |||||||
Sbjct: 28332041 atgaaag 28332035



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                      
Query: 204      gcacagttccatcccgaattcaagtcaaggccaggaaatccctctccacttttc 257
                ||||| || ||||| |||||||||||||| || ||||| || || |||||||||
Sbjct: 28331898 gcacaatttcatcctgaattcaagtcaagacctggaaagccatccccacttttc 28331845
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>ref|NM_118151.3| Arabidopsis thaliana CTP synthase/ catalytic AT4G20320 mRNA, complete
            cds
          Length = 2348

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                            
Query: 60   gatgaaagacatcgacacagatatgaggtgaa 91
            ||||||||||| ||||||||||||||||||||
Sbjct: 1507 gatgaaagacaccgacacagatatgaggtgaa 1538
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>ref|NM_102819.2| Arabidopsis thaliana CTP synthase/ catalytic AT1G30820 mRNA, complete
            cds
          Length = 2472

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                        
Query: 111  cttgagaaggccggtctttcatttgttggcaaggatgaaagtggaaggcgcatggagatc 170
            |||||||||||||||||||| || | ||  || ||||||| ||| |  ||||||||||||
Sbjct: 1802 cttgagaaggccggtctttctttcgctgcgaaagatgaaactggcaaacgcatggagatc 1861

                                                                    
Query: 171  attgagctaccgaagcatgtgttcttcatcggtgcacagttccatcccgaattcaa 226
            ||||| || || || |||   ||||| |||||||| || ||||| ||||| |||||
Sbjct: 1862 attgaacttccaaaccatcctttctttatcggtgctcaattccaccccgagttcaa 1917
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>ref|NM_192800.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1860

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                        
Query: 60   gatgaaagacatcgacacagatatgaggtgaaccctgaaatggtcccagagcttgagaag 119
            ||||| || ||||| ||||||||||||||||| || || ||||| |||||| |||| || 
Sbjct: 1462 gatgagaggcatcggcacagatatgaggtgaatccagatatggtgccagagtttgaaaat 1521

                                                                    
Query: 120  gccggtctttcatttgttggcaaggatgaaagtggaaggcgcatggagatcattga 175
            || || |||   |||||||| || ||||| | ||||||| | |||||||| |||||
Sbjct: 1522 gctggacttcagtttgttgggaaagatgagactggaaggagaatggagataattga 1577



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 201  ggtgcacagttccatcccgaattcaagtcaag 232
            |||||||| |||||||| ||||||||||||||
Sbjct: 1603 ggtgcacaattccatcctgaattcaagtcaag 1634
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>emb|BX813942.1|CNS0AASW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB49ZC05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2201

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Plus

                                                                        
Query: 111  cttgagaaggccggtctttcatttgttggcaaggatgaaagtggaaggcgcatggagatc 170
            |||||||||||||||||||| || | ||  || ||||||| ||| |  ||||||||||||
Sbjct: 1704 cttgagaaggccggtctttctttcgctgcgaaagatgaaactggcaaacgcatggagatc 1763

                                                                    
Query: 171  attgagctaccgaagcatgtgttcttcatcggtgcacagttccatcccgaattcaa 226
            ||||| || || || |||   ||||| |||||||| || ||||| ||||| |||||
Sbjct: 1764 attgaacttccaaaccatcctttctttatcggtgctcaattccaccccgagttcaa 1819
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>gb|BT013487.1| Lycopersicon esculentum clone 132171F, mRNA sequence
          Length = 2418

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 60   gatgaaagacatcgacacagatatgaggtgaaccc 94
            ||||| || ||||||||||||||||||||||||||
Sbjct: 1554 gatgagaggcatcgacacagatatgaggtgaaccc 1588
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>ref|NM_129042.1| Arabidopsis thaliana CTP synthase/ catalytic AT2G34890 mRNA, complete
            cds
          Length = 1794

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                          
Query: 58   tcgatgaaagacatcgacacagatatgaggtgaaccctgaaatggt 103
            |||||||||| ||||| || |||||||||||||| ||||| |||||
Sbjct: 1418 tcgatgaaaggcatcgccatagatatgaggtgaatcctgatatggt 1463
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 61     atgaaagacatcgacacagatatgaggtgaaccctgaa 98
              |||| |||||| |||| |||||||||||||||||||||
Sbjct: 642102 atgagagacatagacatagatatgaggtgaaccctgaa 642065
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>emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52
          Length = 198427

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 60     gatgaaagacatcgacacagatatgaggt 88
              ||||||||||| |||||||||||||||||
Sbjct: 175925 gatgaaagacaccgacacagatatgaggt 175953
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>emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project)
          Length = 111945

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 60     gatgaaagacatcgacacagatatgaggt 88
              ||||||||||| |||||||||||||||||
Sbjct: 108502 gatgaaagacaccgacacagatatgaggt 108530
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0686E09
          Length = 156425

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 201   ggtgcacagttccatcccgaattcaagtcaag 232
             |||||||| |||||||| ||||||||||||||
Sbjct: 76177 ggtgcacaattccatcctgaattcaagtcaag 76146
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>dbj|AB230641.1| Aspergillus oryzae cDNA, contig sequence: AoEST7531
          Length = 482

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 63  gaaagacatcgacacagatatgaggtgaaccctga 97
           ||||||||||| ||| | |||||||||||||||||
Sbjct: 96  gaaagacatcgccaccgttatgaggtgaaccctga 130
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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 63      gaaagacatcgacacagatatgaggtgaaccctga 97
               ||||||||||| ||| | |||||||||||||||||
Sbjct: 1688059 gaaagacatcgccaccgttatgaggtgaaccctga 1688025
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>dbj|AK102275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089D14, full
            insert sequence
          Length = 2086

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 69   catcgacacagatatgaggtgaaccct 95
            ||||| |||||||||||||||||||||
Sbjct: 1491 catcgtcacagatatgaggtgaaccct 1517
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>dbj|AK063965.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A03, full
            insert sequence
          Length = 2119

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 69   catcgacacagatatgaggtgaaccct 95
            ||||| |||||||||||||||||||||
Sbjct: 1505 catcgtcacagatatgaggtgaaccct 1531
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>ref|NM_112102.2| Arabidopsis thaliana EMB2742; CTP synthase/ catalytic AT3G12670
            (EMB2742) mRNA, complete cds
          Length = 2056

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 201  ggtgcacagttccatcccgaattcaagtc 229
            ||||| ||||||||||| |||||||||||
Sbjct: 1607 ggtgctcagttccatcctgaattcaagtc 1635
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>gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosome 17, complete
             sequence
          Length = 181002

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     tatttcctagccaataactgc 24
             |||||||||||||||||||||
Sbjct: 31887 tatttcctagccaataactgc 31867
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>gb|BC044325.1| Xenopus laevis cytidine 5'-triphosphate synthase, mRNA (cDNA clone
            MGC:52832 IMAGE:4884716), complete cds
          Length = 2188

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 66   agacatcgacacagatatgaggtgaaccc 94
            ||||| || ||||||||||||||||||||
Sbjct: 1481 agacaccgccacagatatgaggtgaaccc 1509
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>ref|XM_735027.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000300.03.0)
           partial mRNA
          Length = 1254

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 61  atgaaagacatcgacacagat 81
           |||||||||||||||||||||
Sbjct: 962 atgaaagacatcgacacagat 982
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>gb|AC122168.14| Medicago truncatula clone mth2-4o4, complete sequence
          Length = 120886

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 131   atttgttggcaaggatgaaagtggaaggcgcatggag 167
             ||||||||||| ||||||||| ||||| || ||||||
Sbjct: 85384 atttgttggcagggatgaaagcggaagacgaatggag 85348
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>emb|AL356772.14| Human DNA sequence from clone RP11-47B24 on chromosome 10, complete
              sequence
          Length = 163861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 370    cagtcctggccataaaacctt 390
              |||||||||||||||||||||
Sbjct: 163112 cagtcctggccataaaacctt 163092
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>emb|AL359715.12| Human DNA sequence from clone RP11-250B2 on chromosome 6 Contains a 60S
             ribosomal protein L17 (RPL17) pseudogene, a novel gene and
             a laminin receptor 1 (LAMR1) pseudogene, complete sequence
          Length = 122379

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 166   agatcattgagctaccgaagcatgt 190
             |||||||||||||||||||| ||||
Sbjct: 69263 agatcattgagctaccgaagtatgt 69239
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>emb|AL136119.16| Human DNA sequence from clone RP11-113F5 on chromosome 10, complete
            sequence
          Length = 91580

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 370  cagtcctggccataaaacctt 390
            |||||||||||||||||||||
Sbjct: 1251 cagtcctggccataaaacctt 1231
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>gb|BT008360.1| Arabidopsis thaliana At3g12670 gene, complete cds
          Length = 1776

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 201  ggtgcacagttccatcccgaattcaagtc 229
            ||||| ||||||||||| |||||||||||
Sbjct: 1558 ggtgctcagttccatcctgaattcaagtc 1586
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>gb|AY093110.1| Arabidopsis thaliana CTP-synthetase, putative (At3g12670) mRNA,
            complete cds
          Length = 2056

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 201  ggtgcacagttccatcccgaattcaagtc 229
            ||||| ||||||||||| |||||||||||
Sbjct: 1607 ggtgctcagttccatcctgaattcaagtc 1635
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>gb|AC069474.4|AC069474 Arabidopsis thaliana chromosome 3 BAC T2E22 genomic sequence,
            complete sequence
          Length = 105768

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 201  ggtgcacagttccatcccgaattcaagtc 229
            ||||| ||||||||||| |||||||||||
Sbjct: 7137 ggtgctcagttccatcctgaattcaagtc 7165
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>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21
          Length = 79125

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 201  ggtgcacagttccatcccgaattcaagtc 229
            ||||| ||||||||||| |||||||||||
Sbjct: 5569 ggtgctcagttccatcctgaattcaagtc 5541
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>gb|BC081096.1| Xenopus laevis hypothetical LOC495047, mRNA (cDNA clone MGC:83280
            IMAGE:6863031), complete cds
          Length = 4231

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 66   agacatcgacacagatatgaggtgaaccc 94
            ||||| || ||||||||||||||||||||
Sbjct: 1242 agacaccgccacagatatgaggtgaaccc 1270
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>gb|BC084164.1| Xenopus laevis hypothetical LOC495047, mRNA (cDNA clone MGC:79082
            IMAGE:5047203), complete cds
          Length = 4551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 66   agacatcgacacagatatgaggtgaaccc 94
            ||||| || ||||||||||||||||||||
Sbjct: 1530 agacaccgccacagatatgaggtgaaccc 1558
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>emb|CT485693.1| Xenopus tropicalis finished cDNA, clone TEgg031m17
          Length = 3634

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 66   agacatcgacacagatatgaggtgaaccc 94
            ||||| || ||||||||||||||||||||
Sbjct: 1492 agacaccgccacagatatgaggtgaaccc 1520
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>gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete sequence
          Length = 170684

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 558  ggttttggatttggaactgc 577
            ||||||||||||||||||||
Sbjct: 9240 ggttttggatttggaactgc 9221
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>emb|CR956650.4| Pig DNA sequence from clone CH242-171I16 on chromosome 6, complete
             sequence
          Length = 165704

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     ttcctagccaataactgcaa 26
             ||||||||||||||||||||
Sbjct: 48437 ttcctagccaataactgcaa 48418
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>ref|XM_446506.1| Candida glabrata CBS138, CAGL0G03289g partial mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 255 ttcttagggttaattgcggc 274
           ||||||||||||||||||||
Sbjct: 188 ttcttagggttaattgcggc 169
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>ref|XM_798842.1| Trypanosoma cruzi strain CL Brener cytidine triphosphate synthase
            (Tc00.1047053508993.10) partial mRNA
          Length = 1430

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 69   catcgacacagatatgaggtgaac 92
            ||||| ||||||||||||||||||
Sbjct: 1149 catcgtcacagatatgaggtgaac 1172
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>ref|XM_809018.1| Trypanosoma cruzi strain CL Brener cytidine triphosphate synthase
           (Tc00.1047053506479.130) partial mRNA
          Length = 711

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 69  catcgacacagatatgaggtgaac 92
           ||||| ||||||||||||||||||
Sbjct: 430 catcgtcacagatatgaggtgaac 453
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 484     gcagcatcacgcaacattcc 503
               ||||||||||||||||||||
Sbjct: 5212294 gcagcatcacgcaacattcc 5212275
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 484     gcagcatcacgcaacattcc 503
               ||||||||||||||||||||
Sbjct: 5046607 gcagcatcacgcaacattcc 5046588
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>emb|AL158044.17| Human DNA sequence from clone RP11-264C14 on chromosome 10 Contains
            the 5' end of the gene for a novel protein (MGC10848),
            the ITIH2 gene for inter-alpha (globulin) inhibitor, H2
            polypeptide (H2P), the KIN gene for KIN, antigenic
            determinant of recA protein homolog (mouse), the 3' end
            of the ATP5C1 gene for ATP synthase, H+ transporting,
            mitochondrial F1 complex, gamma polypeptide 1
            (ATP5C,ATP5CL1), a novel gene and two CpG islands,
            complete sequence
          Length = 174361

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  aggccaggaaatccctctcc 250
            ||||||||||||||||||||
Sbjct: 6808 aggccaggaaatccctctcc 6789
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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ttcttagggttaattgcggc 274
              ||||||||||||||||||||
Sbjct: 313058 ttcttagggttaattgcggc 313039
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    tagacctgctgctccagcgc 308
              ||||||||||||||||||||
Sbjct: 116553 tagacctgctgctccagcgc 116572
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>gb|AC132213.1| Drosophila pseudoobscura  FOSMID DPSF1-548A8 (Children's Hospital
             Oakland Research Institute Drosophila pseudoobscura FOSMID
             Library) complete sequence
          Length = 38490

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   cgcatggagatcattgagct 178
             ||||||||||||||||||||
Sbjct: 23376 cgcatggagatcattgagct 23357
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>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence
          Length = 127686

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ccaacggcaccggcaccgca 371
             ||||||||||||||||||||
Sbjct: 43421 ccaacggcaccggcaccgca 43402
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>gb|AC155936.7| Mus musculus 10 BAC RP24-397C20 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 177791

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   ggatttctttggttttggatttgg 571
             |||||||||||||||||| |||||
Sbjct: 63306 ggatttctttggttttggttttgg 63283
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>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone
            BACR38D12, complete sequence
          Length = 171831

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 558  ggttttggatttggaactgc 577
            ||||||||||||||||||||
Sbjct: 8709 ggttttggatttggaactgc 8728
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>gb|AC091713.4| Papio anubis clone RP41-217F22, complete sequence
          Length = 215961

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   aatccctctccacttttctt 259
             ||||||||||||||||||||
Sbjct: 93694 aatccctctccacttttctt 93713
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>gb|AC004135.1|AC004135 Genomic sequence for Arabidopsis thaliana BAC T17H7 from Chromosome 1,
             complete sequence
          Length = 73805

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   cttgagaaggccggtctttc 130
             ||||||||||||||||||||
Sbjct: 25820 cttgagaaggccggtctttc 25801
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>gb|AC139329.3| Mus musculus BAC clone RP24-317B10 from 17, complete sequence
          Length = 139190

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    gcaagctgtatggcaatgctacct 54
             |||||| |||||||||||||||||
Sbjct: 10809 gcaagcggtatggcaatgctacct 10832
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>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
             sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 558   ggttttggatttggaactgc 577
             ||||||||||||||||||||
Sbjct: 86882 ggttttggatttggaactgc 86901
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>gb|AC126694.4| Mus musculus BAC clone RP23-310G20 from 17, complete sequence
          Length = 232041

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    gcaagctgtatggcaatgctacct 54
             |||||| |||||||||||||||||
Sbjct: 24613 gcaagcggtatggcaatgctacct 24590
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>gb|U53396.1|RNU53396 Rattus norvegicus chromosome 10 microsatellite sequence D10Mco17
          Length = 1049

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  aaagacatcgacacagatat 83
           ||||||||||||||||||||
Sbjct: 300 aaagacatcgacacagatat 281


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,489,624
Number of Sequences: 3902068
Number of extensions: 4489624
Number of successful extensions: 86761
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86529
Number of HSP's gapped (non-prelim): 224
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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