ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9o06 |
|---|---|
| Clone Library Name | barley_pub |
>TIM50_ARATH (Q8VYE2) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 376 Score = 253 bits (645), Expect = 4e-67 Identities = 125/189 (66%), Positives = 149/189 (78%), Gaps = 3/189 (1%) Frame = +2 Query: 2 HVFTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPV 181 HVFT+VL LLYT WKRERGWRTFKRPGVDAFLE L KFYE+VVYSDQ+ MYV PV Sbjct: 189 HVFTLVLDLNETLLYTD-WKRERGWRTFKRPGVDAFLEHLGKFYEIVVYSDQMEMYVLPV 247 Query: 182 MERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPI 361 E+LD G +R++L+R ATKY +GKHYRDLSKLNRDP +++++S +A ES LQPEN +PI Sbjct: 248 CEKLDPNGYIRYKLARGATKYENGKHYRDLSKLNRDPKKILFVSANAFESTLQPENSVPI 307 Query: 362 KPWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIERSRRLHEQKQ-- 535 KP+KLEA+DT L+DLIP LEYVA +DIRPVLASFE +DIA EFI+RS ++KQ Sbjct: 308 KPYKLEADDTALVDLIPFLEYVARNSPADIRPVLASFERKDIAKEFIDRSIEYQKRKQGQ 367 Query: 536 -QHGRIWRR 559 GR WRR Sbjct: 368 LGQGRFWRR 376
>TIM50_ASPFU (Q4WI16) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 501 Score = 146 bits (369), Expect = 4e-35 Identities = 77/174 (44%), Positives = 109/174 (62%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL E L++++ W RE GWR KRPGVD FL L ++YE+V+++ SM D V+ Sbjct: 223 YTLVLSLEDLLVHSE-WSREHGWRIAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVLR 281 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +LD +R L R AT+Y G++ +DLS LNRD ++VI I + LQPEN + + Sbjct: 282 KLDPYRIIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDK 341 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIERSRRLHEQ 529 W + +D L+ LIP LEY+A V D+RPVL SFEG I EF +R R + E+ Sbjct: 342 WLGDPKDKNLVALIPFLEYIAGMGVEDVRPVLKSFEGTSIPVEFAKRERIMREK 395
>TIM50_EMENI (Q5B4P0) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 532 Score = 142 bits (359), Expect = 6e-34 Identities = 75/174 (43%), Positives = 108/174 (62%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL E L++++ W RE GWR KRPGVD FL L ++YE+V+++ SM D V+ Sbjct: 252 YTLVLSLEDLLVHSE-WSREHGWRVAKRPGVDYFLRYLNQYYELVLFTSVPSMMADQVLR 310 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +LD +R L R AT+Y G++ +DLS LNRD ++VI I + LQPEN + + Sbjct: 311 KLDPYRIIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDK 370 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIERSRRLHEQ 529 W +D L+ LIP LEY+A V D+R VL SFEG+ I EF +R + + E+ Sbjct: 371 WNGNPKDKTLVALIPFLEYLAGMGVDDVRTVLKSFEGQSIPIEFAKREKAMRER 424
>TIM50_YEAST (Q02776) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 139 bits (349), Expect = 9e-33 Identities = 83/212 (39%), Positives = 124/212 (58%), Gaps = 5/212 (2%) Frame = +2 Query: 11 TIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMER 190 T+V+ E L++++ W ++ GWRT KRPG D FL L+++YE+V++S MY D + E+ Sbjct: 193 TLVITLEDFLVHSE-WSQKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEK 251 Query: 191 LD-AKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD V + L + Y G H +DLSKLNRD ++VI I LQPEN +P++P Sbjct: 252 LDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEP 311 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEG-RDIAAEFIERSRRLHEQ---KQ 535 W EA+D +L+ LIP LEY+A + D+RP+L SFE +++A EF R ++L ++ Sbjct: 312 WNGEADD-KLVRLIPFLEYLATQQTKDVRPILNSFEDKKNLAEEFDHRVKKLKDKFYGDH 370 Query: 536 QHGRIWRR*LLNLLVGKQIITPTSIHLELFLE 631 + G W L L G + T L+L E Sbjct: 371 KSGGNWAMTALGL--GNSLGGSTKFPLDLIHE 400
>TIM50_SCHPO (O13636) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 452 Score = 135 bits (339), Expect = 1e-31 Identities = 67/172 (38%), Positives = 110/172 (63%), Gaps = 1/172 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL + L++++ W R+ GWRT KRPG+D FL L+ +YEVV+++ Q P+++ Sbjct: 177 YTLVLSLDDLLIHSE-WTRQHGWRTAKRPGLDYFLGYLSMYYEVVIFTRQYLATAKPIID 235 Query: 188 RLDAKGC-VRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIK 364 ++D + L+R ++KY GK +DLS LNRD +RVI I + QP+N + + Sbjct: 236 KIDPYHVSISAVLTRESSKYEKGKVIKDLSYLNRDLSRVIMIDTNPESWSKQPDNAIAMA 295 Query: 365 PWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIERSRRL 520 PW +D +L+ LIPLLE++A+ + D+RPVL S++G++I E+ R +L Sbjct: 296 PWTGNPKDKELVGLIPLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
>TIM50_CANGA (Q6FRX4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 485 Score = 135 bits (339), Expect = 1e-31 Identities = 75/195 (38%), Positives = 119/195 (61%), Gaps = 7/195 (3%) Frame = +2 Query: 11 TIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMER 190 T+V+ E L++++ W ++ GWRT KRPG D FL L+++YE+V++S MY + + E+ Sbjct: 199 TLVITLEDFLVHSE-WDQKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYAEKIAEK 257 Query: 191 LD-AKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +D + + L + Y G H +DLSKLNRD +V+ I LQPEN +P+ P Sbjct: 258 MDPIHAFISYNLFKEHCVYKDGVHIKDLSKLNRDLKKVMIIDTDENSYKLQPENAIPMDP 317 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEG-RDIAAEFIERSRRL-----HEQ 529 W +A+D +L+ LIP LEY+A +V D+RP+L S+ R++ AEF +R ++L +Q Sbjct: 318 WDGKADD-KLLRLIPFLEYMATQQVEDVRPILKSYHNKRELPAEFEQRVQKLKNKFEQDQ 376 Query: 530 KQQHGRIWRR*LLNL 574 K+++ W LL L Sbjct: 377 KKKNDSNWLLKLLGL 391
>TIM50_PHYIN (Q5S7T7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor (NIF domain protein 3) Length = 409 Score = 134 bits (338), Expect = 2e-31 Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 7/182 (3%) Frame = +2 Query: 14 IVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERL 193 +VL E L++++ W R+ GWR KRPGVD FLE L ++YE+V++S + ++++L Sbjct: 171 LVLDLEDTLVHSE-WSRKHGWRHAKRPGVDEFLETLCQYYEIVIFSQNYG--AEEIVQKL 227 Query: 194 DAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKPWK 373 D K C H LSR AT+Y++G H +DLS LNRD +V+ + LQPEN +P+ P+ Sbjct: 228 DPKQCALHILSRDATRYLNGAHVKDLSNLNRDLRQVVILDDDPAAYQLQPENAIPVTPFT 287 Query: 374 --LEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEG-----RDIAAEFIERSRRLHEQK 532 + +D +L DLIP L+ +A RV D R V+ F RD+A ++ R +L QK Sbjct: 288 NGRDRDDHELKDLIPFLKALASERVPDFRQVIGEFRDEDGVVRDLATKYGARVHQLEMQK 347 Query: 533 QQ 538 +Q Sbjct: 348 EQ 349
>TIM50_GIBZE (Q4I099) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 525 Score = 133 bits (335), Expect = 4e-31 Identities = 71/179 (39%), Positives = 110/179 (61%), Gaps = 3/179 (1%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+ L + L++++ W RE GWR KRPGVD F+ L+++YE+V+++ +PVM Sbjct: 238 YTLCLSLDDLLIHSE-WTREHGWRIAKRPGVDYFIRYLSQYYELVLFTTTPYATGEPVMR 296 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +LD + L R ATK+ G+ +DLS LNRD ++VI I A QP+N + + P Sbjct: 297 KLDPFRLILWPLYREATKFEDGEIVKDLSYLNRDLSKVIIIDTKAKHVRNQPDNAIILDP 356 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIER---SRRLHEQKQ 535 WK + +D L++LIP LEY+ + SD+R V+ SF+G+DI EF R +R+ + KQ Sbjct: 357 WKGDKDDKNLVNLIPFLEYIHTMQYSDVRKVIKSFDGKDIPTEFARREAIARKEFQAKQ 415
>TIM50_KLULA (Q6CM45) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 480 Score = 132 bits (333), Expect = 6e-31 Identities = 73/182 (40%), Positives = 115/182 (63%), Gaps = 2/182 (1%) Frame = +2 Query: 11 TIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMER 190 T+VL E L++++ W ++ GWRT KRPGVD FL L+++YE+V++S MY + + E+ Sbjct: 196 TLVLSLEDLLVHSE-WTQQSGWRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEK 254 Query: 191 LD-AKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD + + L + Y G H +DLSKLNRD +V+ I LQPEN + ++P Sbjct: 255 LDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEP 314 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIAAEFIERSRRLHEQKQQHG 544 W +A+D +L+ LIP LEY+A +VSD+RP+L SF + ++I F +R + L E+ ++ Sbjct: 315 WDGKADD-RLLRLIPFLEYLATQQVSDVRPILKSFPDNKNIPEAFEKRVQVLKEKFERDE 373 Query: 545 RI 550 R+ Sbjct: 374 RV 375
>TIM50_CRYNE (Q5KNV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 516 Score = 131 bits (329), Expect = 2e-30 Identities = 69/185 (37%), Positives = 111/185 (60%), Gaps = 1/185 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+ + E L+++ W R GWRT KRPGVD FL L++FYE+V++S Q P+ E Sbjct: 236 YTLCIDLEGLLVHSS-WDRTHGWRTAKRPGVDYFLGYLSQFYEIVLFSSQPLYTAAPIAE 294 Query: 188 RLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIK 364 ++D + + +RL R +T+ V GK +D+S LNRDP++VI + + LQPEN + ++ Sbjct: 295 KIDPYQAFMPYRLFRESTRSVKGKVVKDISFLNRDPSKVIVLDVNPEHVALQPENGIVLQ 354 Query: 365 PWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIERSRRLHEQKQQHG 544 PW D L+D+IP LE + + +D+RP+L ++ G+DI E+ ++ E K + Sbjct: 355 PWNGSPGDKGLVDMIPFLESIGIFNPADVRPILQAYAGKDIPIEYAKKEA---EAKAKAI 411 Query: 545 RIWRR 559 W R Sbjct: 412 EEWER 416
>TIM50_CANAL (Q59W44) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 469 Score = 130 bits (327), Expect = 3e-30 Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 3/181 (1%) Frame = +2 Query: 11 TIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMER 190 T+V+ + L+++ W + GWRT KRPG+D FL L+++YE+VV+S +Y D + + Sbjct: 189 TLVVTLDDFLIHSN-WDTQHGWRTGKRPGLDYFLGYLSQYYEIVVFSSNSQIYSDKTVNK 247 Query: 191 LDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD + + L R A +Y GK +DLS LNRD + + I + LQPEN + +K Sbjct: 248 LDPYHAYISYALFREACRYKDGKLIKDLSLLNRDLGKTVMIDVDEDSAALQPENSIIVKK 307 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGR-DIAAEFIERSRRLHEQ-KQQH 541 W+ + D LI LIP LEY+A V D+RP+L S++ + +I AEF ER +L EQ ++ H Sbjct: 308 WEGQ-PDEYLISLIPFLEYLATQPVKDVRPILNSYKDKSNIVAEFAERENKLREQWRKDH 366 Query: 542 G 544 G Sbjct: 367 G 367
>TIM50_DEBHA (Q6BVY9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 471 Score = 128 bits (322), Expect = 1e-29 Identities = 70/175 (40%), Positives = 105/175 (60%), Gaps = 2/175 (1%) Frame = +2 Query: 11 TIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMER 190 T+V+ + L+++ W + GWRT KRPG+D FL L+++YE+V++ MY + + + Sbjct: 191 TLVVTLDDLLIHSD-WDTKHGWRTGKRPGLDYFLGYLSQYYEIVIFGSNYQMYSENTVGK 249 Query: 191 LDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD V + L R A +Y GK +DLS LNRD + + I +QP+N +P+KP Sbjct: 250 LDPFHAYVSYALFREACRYKDGKLVKDLSLLNRDLGKTVLIDVEEDSWSMQPDNAIPMKP 309 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGR-DIAAEFIERSRRLHEQ 529 W +DT L+ LIP LEY+A V D+RP+L SF+ + +I EF ER +L EQ Sbjct: 310 WDGSYDDT-LVKLIPFLEYLATQPVKDVRPILNSFKDKSNIVQEFAEREAKLREQ 363
>TIM50_NEUCR (Q874C1) Import inner membrane translocase subunit tim-50,| mitochondrial precursor Length = 540 Score = 128 bits (321), Expect = 2e-29 Identities = 64/167 (38%), Positives = 100/167 (59%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+ + E L++++ W R+ GWR KRPGVD FL L+++YE+V+++ +P++ Sbjct: 249 YTLCISLEDMLVHSE-WTRDHGWRLAKRPGVDYFLRYLSQYYEIVLFTSVPFANAEPIVR 307 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 ++D + L R ATKY G+ +DLS LNRD ++VI I QPEN + + Sbjct: 308 KMDPYRFIMWPLFREATKYKDGEIVKDLSYLNRDLSKVIIIDTDPKHVRAQPENAIVLPK 367 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIER 508 WK + +DT+L+ L+P LE++ D+R VL SFEG+ I EF R Sbjct: 368 WKGDPKDTELVSLVPFLEFIHTMNFPDVRKVLKSFEGQHIPTEFARR 414
>TIM50_MOUSE (Q9D880) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 127 bits (320), Expect = 2e-29 Identities = 66/178 (37%), Positives = 106/178 (59%), Gaps = 1/178 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL LL+ + W GWR KRPG++ +QLA YE+V+++ + M P+++ Sbjct: 148 YTLVLELTGVLLHPE-WSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 206 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + LQP N + ++P Sbjct: 207 SVDPHGFISYRLFRDATRYMEGHHVKDISCLNRDPARVVVVDCKKEAFRLQPFNGVALRP 266 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAE-FIERSRRLHEQKQQ 538 W ++D L+DL L+ +A+ +V D+R VL + D E F +R RL +++QQ Sbjct: 267 WDGNSDDRVLLDLSAFLKTIALNQVEDVRTVLEHYALEDDPLEAFKQRQSRLEQEEQQ 324
>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 466 Score = 127 bits (320), Expect = 2e-29 Identities = 67/165 (40%), Positives = 95/165 (57%), Gaps = 1/165 (0%) Frame = +2 Query: 38 LLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDA-KGCVR 214 LL Q W RE GWR KRPGVD FL L ++YE+V++S Q + ++ +LD Sbjct: 202 LLVHQEWSREHGWRVAKRPGVDYFLGYLGQYYEIVLFSSQYMANCEKLIMKLDPYHAWFS 261 Query: 215 HRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQ 394 H L+R T Y GK +DLS +NRD ++I I + QPEN +PI+PWK D + Sbjct: 262 HVLTREHTTYEDGKLVKDLSLMNRDMGKIIIIDPDTGCTMKQPENSIPIEPWKGTPGDKE 321 Query: 395 LIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIERSRRLHEQ 529 L+ LIP LE++ V+D+RP+L +F+G + EF R E+ Sbjct: 322 LVKLIPFLEWLVSQNVNDVRPILKAFDGTYLPDEFTRREAIAREK 366
>TIM50_USTMA (Q4PEW9) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 493 Score = 126 bits (317), Expect = 5e-29 Identities = 64/176 (36%), Positives = 107/176 (60%), Gaps = 1/176 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 FT+V+ + L++++ W RE GWRT KRPG+D FL L++FYE+V+++ Q P++E Sbjct: 221 FTMVIDIDDLLVHSE-WSREHGWRTAKRPGLDHFLGYLSQFYEIVLFTTQPFFTAGPIIE 279 Query: 188 RLDA-KGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIK 364 +LD + + + L R + + V GK +DL+ LNRD ++V+ + + L PEN + +K Sbjct: 280 KLDPDRRFITYTLFRESCRTVDGKLVKDLNHLNRDLSKVVVVDTNPDSFHLHPENGILVK 339 Query: 365 PWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRDIAAEFIERSRRLHEQK 532 PWK E ED +LI LIP E + + + D+R + ++ G I E R+ + E++ Sbjct: 340 PWKGEREDRELIGLIPFFEAIGIYNIDDVRNTIKAYTGTHIPTEHARRTAAIRERE 395
>TIM50_PONPY (Q5RAJ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 126 bits (316), Expect = 6e-29 Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL LL+ + W GWR KRPG++ +QLA YE+V+++ + M P+++ Sbjct: 148 YTLVLELTGVLLHLE-WSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 206 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + LQP N + ++P Sbjct: 207 SVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRP 266 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFE-GRDIAAEFIERSRRLHEQKQQ 538 W ++D L+DL L+ +A+ V D+R VL + D A F +R RL +++QQ Sbjct: 267 WDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQRQSRLEQEEQQ 324
>TIM50_HUMAN (Q3ZCQ8) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 353 Score = 126 bits (316), Expect = 6e-29 Identities = 66/178 (37%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL LL+ + W GWR KRPG++ +QLA YE+V+++ + M P+++ Sbjct: 148 YTLVLELTGVLLHPE-WSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 206 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + LQP N + ++P Sbjct: 207 SVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRP 266 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFE-GRDIAAEFIERSRRLHEQKQQ 538 W ++D L+DL L+ +A+ V D+R VL + D A F +R RL +++QQ Sbjct: 267 WDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQRQSRLEQEEQQ 324
>TIM50_BOVIN (Q3SZB3) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 355 Score = 125 bits (313), Expect = 1e-28 Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 1/178 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL LL+ + W GWR KRPG++ +QLA YE+V+++ + M P+++ Sbjct: 150 YTLVLELTGVLLHPE-WSLATGWRFKKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 208 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +D G + +RL R AT+Y+ G H +D+S LNRDPARV+ + LQP N + ++P Sbjct: 209 SVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRP 268 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFE-GRDIAAEFIERSRRLHEQKQQ 538 W ++D L+DL L+ +A+ V D+R VL + D F +R RL +++QQ Sbjct: 269 WDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEEDPLEAFKQRQSRLEQEEQQ 326
>TIM50_CAEEL (Q22647) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 452 Score = 123 bits (309), Expect = 4e-28 Identities = 69/179 (38%), Positives = 108/179 (60%), Gaps = 2/179 (1%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLA-KFYEVVVYSDQLSMYVDPVM 184 +TIV+ + L++ + W + G+R KRP +D FL+ + +EVV+YS + M PV+ Sbjct: 248 YTIVIELKNILVHPE-WTYKTGYRFLKRPALDYFLDVIGYPNFEVVIYSSESMMTAAPVV 306 Query: 185 ERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIK 364 + D K + ++L R TKY++G H +DLSKLNRD ++VIYI A L PEN L + Sbjct: 307 DSFDPKQRIMYKLFRDCTKYMNGHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVP 366 Query: 365 PWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIAAEFIERSRRLHEQKQQ 538 WK +DT L+DL LL+ + ++ D+RP+L + + D A EF R+ L +Q++Q Sbjct: 367 EWKGNMDDTSLVDLAELLKTIHLSDAEDVRPMLQYYSQYDDPAKEFRRRAVYLSQQEEQ 425
>TIM50_CAEBR (Q61JS7) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 456 Score = 122 bits (305), Expect = 1e-27 Identities = 68/179 (37%), Positives = 108/179 (60%), Gaps = 2/179 (1%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLA-KFYEVVVYSDQLSMYVDPVM 184 +TIV+ + L++ + W + G+R KRP +D FL+ + +EVV+YS + M PV+ Sbjct: 252 YTIVIELKNILVHPE-WTYKTGYRFLKRPALDYFLDVIGYPNFEVVIYSSESMMTAAPVV 310 Query: 185 ERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIK 364 + D K + ++L R TKY++G H +DLSKLNRD ++VIYI A L PEN L + Sbjct: 311 DSFDQKQRIMYKLFRDCTKYMNGHHVKDLSKLNRDLSKVIYIDFDAKSGQLNPENMLRVP 370 Query: 365 PWKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIAAEFIERSRRLHEQKQQ 538 W+ +DT L+DL LL+ + ++ D+RP+L + + D A EF R+ L +Q++Q Sbjct: 371 EWRGNMDDTSLVDLAELLKTIHLSDAEDVRPMLQYYSQYDDPAKEFRRRAVYLAQQEEQ 429
>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,| mitochondrial precursor Length = 343 Score = 121 bits (303), Expect = 2e-27 Identities = 65/178 (36%), Positives = 105/178 (58%), Gaps = 1/178 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +++VL + L++ W + GWR KRPGVD FL+Q ++ +E+V+Y+ + M P+++ Sbjct: 140 YSLVLEIKDVLVHPD-WTYQTGWRFKKRPGVDYFLQQCSRNFEIVIYTSEQGMTAFPLLD 198 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD G +++RL R AT V G+H ++L LNRD +RVI + + L P+N L + Sbjct: 199 ALDPYGYIKYRLVRGATDLVEGQHTKNLDYLNRDLSRVIVVDCDPYTTPLHPDNSLVLTK 258 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIAAEFIERSRRLHEQKQQ 538 W +D QL DL L+ +A +V+D+R VL + + D +F + RRL EQ Q+ Sbjct: 259 WLGNDDDVQLFDLTAFLQLIAEHQVNDVREVLRYYRQFEDPMEQFKDNQRRLQEQSQE 316
>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,| mitochondrial precursor Length = 428 Score = 120 bits (300), Expect = 4e-27 Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 1/182 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL + L++ W + GWR KRPGVD FL + AK +E+VV++ + M V P+++ Sbjct: 229 YTLVLEMKDVLVHPD-WTYQTGWRFKKRPGVDHFLAECAKDFEIVVFTAEQGMTVFPILD 287 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD G + +RL R AT +V G H ++L LNRD +VI + A + + P+N + Sbjct: 288 ALDPNGYIMYRLVRDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLAR 347 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIAAEFIERSRRLHEQKQQHG 544 W +D QL+DLI L+ +A V D+R VL + + D +F E R+L EQ + Sbjct: 348 WHGNDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQFRENQRKLAEQMLEAE 407 Query: 545 RI 550 RI Sbjct: 408 RI 409
>TIM50_BRARE (Q6NWD4) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 387 Score = 115 bits (289), Expect = 8e-26 Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 19/203 (9%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL LL+ + W GWR KRPG+D +QLA YE+V+++ + M P+++ Sbjct: 183 YTLVLELTDVLLHPE-WSLATGWRFKKRPGIDYLFQQLAPLYEIVIFTSETGMTAYPLID 241 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 +D +G V +RL R AT+Y+ G H +D+S LNRD ++VI + LQP N L + Sbjct: 242 SIDPQGFVMYRLFRDATRYMEGHHVKDVSCLNRDTSKVIVVDCKREAFGLQPFNGLALCK 301 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGRD------------IAAEFIERS 511 W +ED L DL L+ +A + V D+R VL ++ + +A E +R Sbjct: 302 WDGNSEDRTLYDLAAFLKTIATSGVEDVRSVLENYAHEEDPIEAFKRRQAQLAREEEQRI 361 Query: 512 RRLHEQKQQ-------HGRIWRR 559 + +QK+Q GR W R Sbjct: 362 SEMAQQKKQGFSLGTIAGRFWSR 384
>TI50B_DROME (Q9W0S3) Import inner membrane translocase subunit TIM50-B,| mitochondrial precursor Length = 409 Score = 114 bits (286), Expect = 2e-25 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 1/174 (0%) Frame = +2 Query: 8 FTIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVME 187 +T+VL + L++ W E GWR KRPGVD FL++ AK++E+VVY+ + + V P+++ Sbjct: 210 YTLVLEIKDVLVHPD-WTYETGWRFKKRPGVDVFLKECAKYFEIVVYTAEQGVTVFPLVD 268 Query: 188 RLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD GC+ +RL R +T + G H ++L LNRD RV+ + + P N I Sbjct: 269 ALDPNGCIMYRLVRDSTHFDGGHHVKNLDNLNRDLKRVVVVDWDRNSTKFHPSNSFSIPR 328 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASF-EGRDIAAEFIERSRRLHE 526 W DT L +L L + + + D+R VL + + D ++F E R+L E Sbjct: 329 WSGNDNDTTLFELTSFLSVLGTSEIDDVREVLQYYNQFSDSLSQFRENQRKLGE 382
>TIM50_ASHGO (Q75A73) Import inner membrane translocase subunit TIM50,| mitochondrial precursor Length = 476 Score = 102 bits (253), Expect = 1e-21 Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 2/172 (1%) Frame = +2 Query: 11 TIVLXSERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMER 190 T+VL E ++ + W ++ GWRT RPG D L L+ +YE V++ +Y V+E+ Sbjct: 192 TLVLPLEDFFVHFE-WTQQYGWRTVIRPGADYLLGYLSDYYENVLFPSNYMVYSKKVVEK 250 Query: 191 LD-AKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKP 367 LD + + + L + Y G H +DLS LNRD + + I LQ EN + +P Sbjct: 251 LDPIRAFITYNLFKDHCVYKDGIHIKDLSHLNRDLGKTLIIDTDPNSVKLQMENAILAEP 310 Query: 368 WKLEAEDTQLIDLIPLLEYVAMARVSDIRPVLASFEGR-DIAAEFIERSRRL 520 W +A+D L+ IP LEY+ ++D+RP+L SF+ R I EF ER +L Sbjct: 311 WDGKADDA-LLRYIPFLEYLVTQPINDVRPILNSFKDRHHIPEEFAERVEKL 361
>YA22_SCHPO (Q09695) Hypothetical protein C2F7.02c in chromosome I| Length = 325 Score = 97.1 bits (240), Expect = 4e-20 Identities = 52/129 (40%), Positives = 73/129 (56%) Frame = +2 Query: 77 RTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGK 256 R KRPGVD FL+++ +E+VV++ L+ Y DPV++ LD +RHRL R A G Sbjct: 195 RVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIRHRLFREACCNYEGN 254 Query: 257 HYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMA 436 +DLS+L R+ I I P + +PI W + D +LIDLIP LE+ +A Sbjct: 255 FVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHDMELIDLIPFLEH--LA 312 Query: 437 RVSDIRPVL 463 RV D+ VL Sbjct: 313 RVPDVSTVL 321
>PSR2_YEAST (Q07949) Probable phosphatase PSR2 (EC 3.1.3.-) (Plasma membrane| sodium response protein 2) Length = 397 Score = 96.7 bits (239), Expect = 5e-20 Identities = 45/126 (35%), Positives = 74/126 (58%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRPGVD FL ++++ YEVVV++ +S Y +P+++ LD G + HRL R A G + + Sbjct: 268 KRPGVDEFLNRVSQLYEVVVFTASVSRYANPLLDTLDPNGTIHHRLFREACYNYEGNYIK 327 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVS 445 +LS++ R + I + P++ +PI W + D +L+D+IPLLE ++ V Sbjct: 328 NLSQIGRPLSETIILDNSPASYIFHPQHAVPISSWFSDTHDNELLDIIPLLEDLSSGNVL 387 Query: 446 DIRPVL 463 D+ VL Sbjct: 388 DVGSVL 393
>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium| response protein 1) Length = 427 Score = 91.7 bits (226), Expect = 2e-18 Identities = 43/126 (34%), Positives = 74/126 (58%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRPGV+ FLE++ K +EVVV++ +S Y DP+++ LD + HRL R A G + + Sbjct: 298 KRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTDKVIHHRLFREACYNYEGNYIK 357 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVS 445 +LS++ R + +I + P++ +PI W + D +L+D+IPLLE +++ Sbjct: 358 NLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFSDTHDNELLDIIPLLEDLSVKTSL 417 Query: 446 DIRPVL 463 D+ +L Sbjct: 418 DVGKIL 423
>CTDSL_MOUSE (P58465) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) Length = 276 Score = 90.9 bits (224), Expect = 3e-18 Identities = 45/126 (35%), Positives = 74/126 (58%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRP VD FL+++ + +E V+++ L+ Y DPV + LD G R RL R + + G + + Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 206 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVS 445 DLS+L R+ ++VI + PEN +P++ W + DT+L+DLIP E ++R Sbjct: 207 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFE--GLSRED 264 Query: 446 DIRPVL 463 D+ +L Sbjct: 265 DVYSML 270
>CTDSL_HUMAN (O15194) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Small CTD phosphatase 3) (SCP3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) (NIF-like protein) (RBSP3) (YA22 protei Length = 276 Score = 90.9 bits (224), Expect = 3e-18 Identities = 45/126 (35%), Positives = 74/126 (58%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRP VD FL+++ + +E V+++ L+ Y DPV + LD G R RL R + + G + + Sbjct: 147 KRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 206 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVS 445 DLS+L R+ ++VI + PEN +P++ W + DT+L+DLIP E ++R Sbjct: 207 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFE--GLSRED 264 Query: 446 DIRPVL 463 D+ +L Sbjct: 265 DVYSML 270
>CTDS1_MOUSE (P58466) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Golli-interacting protein) (GIP) Length = 261 Score = 90.1 bits (222), Expect = 5e-18 Identities = 46/126 (36%), Positives = 71/126 (56%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRP VD FL+++ + +E V+++ L+ Y DPV + LD G R RL R + + G + + Sbjct: 131 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVK 190 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVS 445 DLS+L RD RV+ + P+N +P+ W DT+L DL+P E ++RV Sbjct: 191 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE--QLSRVD 248 Query: 446 DIRPVL 463 D+ VL Sbjct: 249 DVYSVL 254
>CTDS1_HUMAN (Q9GZU7) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (NLI-IF) Length = 261 Score = 90.1 bits (222), Expect = 5e-18 Identities = 46/126 (36%), Positives = 71/126 (56%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRP VD FL+++ + +E V+++ L+ Y DPV + LD G R RL R + + G + + Sbjct: 131 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVK 190 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMARVS 445 DLS+L RD RV+ + P+N +P+ W DT+L DL+P E ++RV Sbjct: 191 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFE--QLSRVD 248 Query: 446 DIRPVL 463 D+ VL Sbjct: 249 DVYSVL 254
>CTDSL_CHICK (Q9PTJ6) CTD small phosphatase-like protein (CTDSP-like) (Small| C-terminal domain phosphatase 3) (Nuclear LIM interactor-interacting factor 1) (NLI-interacting factor 1) Length = 275 Score = 89.4 bits (220), Expect = 8e-18 Identities = 42/112 (37%), Positives = 67/112 (59%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRP VD FL+++ + +E V+++ L+ Y DPV + LD G R RL R + + G + + Sbjct: 146 KRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCVFHRGNYVK 205 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLE 421 DLS+L R+ ++VI + PEN +P++ W + DT+L+DLIP E Sbjct: 206 DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFE 257
>CTDS2_MOUSE (Q8BX07) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) Length = 270 Score = 85.1 bits (209), Expect = 2e-16 Identities = 41/112 (36%), Positives = 65/112 (58%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRP VD FL ++ + +E V+++ L+ Y DPV + LD G R RL R A + G + + Sbjct: 141 KRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQGCYVK 200 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLE 421 DLS+L RD + + + PEN +P++ W + DT+L++LIP+ E Sbjct: 201 DLSRLGRDLRKTVILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPVFE 252
>CTDS2_HUMAN (O14595) Carboxy-terminal domain RNA polymerase II polypeptide A| small phosphatase 2 (EC 3.1.3.16) (Small CTD phosphatase 2) (SCP2) (Nuclear LIM interactor-interacting factor 2) (NLI-interacting factor 2) (Protein OS-4) Length = 271 Score = 84.3 bits (207), Expect = 3e-16 Identities = 41/117 (35%), Positives = 68/117 (58%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYR 265 KRP VD FL ++ + +E V+++ L+ Y DPV + LD G R RL R + + G + + Sbjct: 142 KRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVK 201 Query: 266 DLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDLIPLLEYVAMA 436 DLS+L RD + + + PEN +P++ W + DT+L++LIP+ E ++ A Sbjct: 202 DLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPIFEELSGA 258
>YHG4_YEAST (P38757) Hypothetical 50.6 kDa protein in RPL14B-GPA1 intergenic| region Length = 446 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 13/144 (9%) Frame = +2 Query: 86 KRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAK--GCVRHRLSRVATKYVHGKH 259 KRP D FL +++K+Y++++++ + Y DPV++ L++ R R G Sbjct: 298 KRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDCVLRDGVG 357 Query: 260 Y-RDLSKLNRDPAR----------VIYISGHALESCLQPENCLPIKPWKLEAEDTQLIDL 406 Y +DLS + VI I + + +N + ++ W + DT L++L Sbjct: 358 YIKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQVEGWISDPTDTDLLNL 417 Query: 407 IPLLEYVAMARVSDIRPVLASFEG 478 +P LE AM +D+R +LA G Sbjct: 418 LPFLE--AMRYSTDVRNILALKHG 439
>FCP1_ENCCU (Q8SV03) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase FCP1) Length = 411 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 89 RPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKG 205 RP +D L +++K YE+ VY+ Y + ++E +D G Sbjct: 99 RPNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSG 137
>MAM1_SCHPO (P78966) Mating factor M secretion protein mam1 (Multiple drug| resistance protein homolog) (P-glycoprotein) Length = 1336 Score = 30.4 bits (67), Expect = 4.5 Identities = 15/69 (21%), Positives = 31/69 (44%) Frame = +2 Query: 140 VVYSDQLSMYVDPVMERLDAKGCVRHRLSRVATKYVHGKHYRDLSKLNRDPARVIYISGH 319 ++ D+ + +DP+ + L HR + H D+S++N D ++ GH Sbjct: 591 ILILDEPTSALDPITKNLVMDAIRAHRKGKTTLVITH-----DMSQINNDELVLVIDKGH 645 Query: 320 ALESCLQPE 346 ++ C + E Sbjct: 646 LIQRCARKE 654
>CTDP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 960 Score = 30.0 bits (66), Expect = 5.9 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 26 SERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLD-AK 202 S + + + Q + E T RP FLE++AK YE+ V++ +Y + LD K Sbjct: 205 SNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEK 264 Query: 203 GCVRHRL 223 HR+ Sbjct: 265 KLFSHRI 271
>CTDP1_HUMAN (Q9Y5B0) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 961 Score = 30.0 bits (66), Expect = 5.9 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 26 SERXLLYTQXWKRERGWRTFKRPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLD-AK 202 S + + + Q + E T RP FLE++AK YE+ V++ +Y + LD K Sbjct: 205 SNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEK 264 Query: 203 GCVRHRL 223 HR+ Sbjct: 265 KLFSHRI 271
>Y104_SULSO (P95957) Putative aminotransferase SSO0104 (EC 2.6.1.-) (AspB-1)| Length = 401 Score = 30.0 bits (66), Expect = 5.9 Identities = 25/84 (29%), Positives = 36/84 (42%) Frame = +2 Query: 218 RLSRVATKYVHGKHYRDLSKLNRDPARVIYISGHALESCLQPENCLPIKPWKLEAEDTQL 397 R TKY+ RDL KL + VI ++G L P++ K A+D L Sbjct: 4 RFLSTETKYLRTSEIRDLLKLT-EGKNVISLAGG-----LPDPQTFPVEEIKKIADDILL 57 Query: 398 IDLIPLLEYVAMARVSDIRPVLAS 469 L+Y A A +S+ R L + Sbjct: 58 NSADKALQYTATAGISEFRRELVN 81
>FCP1_SCHPO (Q9P376) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase fcp1) Length = 723 Score = 29.6 bits (65), Expect = 7.7 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +2 Query: 89 RPGVDAFLEQLAKFYEVVVYSDQLSMYVDPVMERLDAKG 205 RPG+ FL+++++ YE+ +Y+ Y V + +D G Sbjct: 223 RPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,408,097 Number of Sequences: 219361 Number of extensions: 1669892 Number of successful extensions: 4291 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 4136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4266 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
