No.
Definition
Score (bits)
E Value
1 ref|NM_192031.1| Oryza sativa (japonica cultivar-group), predic...
365
1e-97
2 dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clon...
365
1e-97
3 dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clon...
365
1e-97
4 gb|AY106215.1| Zea mays PCO086004 mRNA sequence
280
6e-72
5 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
248
2e-62
6 dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic D...
248
2e-62
7 dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clon...
192
1e-45
8 dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clon...
125
2e-25
9 gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, comple...
50
0.009
10 gb|AY149909.1| Mastigamoeba balamuthi malate dehydrogenase gene,...
44
0.57
11 gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, comp...
42
2.3
12 gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome...
42
2.3
13 emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 o...
42
2.3
14 gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F...
42
2.3
15 emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ...
42
2.3
16 gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell ...
42
2.3
17 gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell...
42
2.3
18 dbj|AK165756.1| Mus musculus 15 days embryo brain cDNA, RIKEN fu...
42
2.3
19 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
42
2.3
20 gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, comple...
42
2.3
21 gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74...
42
2.3
22 gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosom...
42
2.3
23 gb|AC152495.1| Zea mays BAC clone Z486N13, complete sequence
40
8.9
24 gb|AC166346.5| Mus musculus BAC clone RP24-83P13 from chromosome...
40
8.9
25 gb|AC166832.2| Mus musculus BAC clone RP23-220N17 from chromosom...
40
8.9
26 gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co...
40
8.9
27 gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, comp...
40
8.9
28 ref|XM_425695.1| PREDICTED: Gallus gallus similar to mannosidase...
40
8.9
29 gb|DQ486867.1| Conus marmoreus protein disulfide isomerase (MrPD...
40
8.9
30 gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, comp...
40
8.9
31 gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosom...
40
8.9
32 emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chr...
40
8.9
33 emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chr...
40
8.9
34 gb|AC159656.11| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cance...
40
8.9
35 gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, comp...
40
8.9
36 gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C...
40
8.9
37 gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet...
40
8.9
38 gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chrom...
40
8.9
39 gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosom...
40
8.9
40 gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complet...
40
8.9
41 gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, comple...
40
8.9
42 gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, compl...
40
8.9
43 gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Can...
40
8.9
>dbj|AK120629.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013153D21, full
insert sequence
Length = 915
Score = 365 bits (184), Expect = 1e-97
Identities = 286/320 (89%)
Strand = Plus / Plus
Query: 233 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 292
||||||||||| |||||||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 297 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 356
Query: 293 cgcaaggccgagatgcgcacccggatgaagaaggttttcagagcccttgaaaagcttcgg 352
||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
Sbjct: 357 cgcaaggccgagatgcgcaccaggatgaagaaggttttgaaagcccttgaaaagctgaga 416
Query: 353 aagaaagccgatgcccaacctgaagaaatcattgaaatagagaaaatgatctctgaggca 412
|||||||| |||||| ||||||||| |||||| ||||||||||| ||| |||||||||
Sbjct: 417 aagaaagctgatgccacacctgaagatatcattcaaatagagaaatggatttctgaggca 476
Query: 413 tacaaagccatcgacaagacagtgaaggttggcgccatgcacaggaatactggagatcat 472
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 477 tacaaagccattgacaagacagtgaaggttggcgccatgcacaggaatactggtaaccat 536
Query: 473 cgcaagtccaggcttgcaaggaggaagaaggccattgagataattcgtggttggtatgtt 532
||||||||| ||||| ||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 537 cgcaagtcccttcttgcgaggaggaagaaggccatcgagatactccgtggttggtatgtt 596
Query: 533 ccgaatgctgaacctgctgc 552
|| || ||||||||||||||
Sbjct: 597 ccaaacgctgaacctgctgc 616
Score = 63.9 bits (32), Expect = 6e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 156 cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 203
|||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 214 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 261
Score = 63.9 bits (32), Expect = 6e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 107 cgcctgtcgacctcctacgccgccttccccatcggtgggttcgg 150
|||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 150 cgcctgtccgcctcctacgccgccttccccatcggtgggatcgg 193
Score = 40.1 bits (20), Expect = 8.9
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 613 tcttgccaattttggaca-gcatatgtt 639
|||||||||||||||||| |||||||||
Sbjct: 678 tcttgccaattttggacatgcatatgtt 705
>dbj|AK063019.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B01, full
insert sequence
Length = 727
Score = 365 bits (184), Expect = 1e-97
Identities = 286/320 (89%)
Strand = Plus / Plus
Query: 233 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 292
||||||||||| |||||||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 294 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 353
Query: 293 cgcaaggccgagatgcgcacccggatgaagaaggttttcagagcccttgaaaagcttcgg 352
||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
Sbjct: 354 cgcaaggccgagatgcgcaccaggatgaagaaggttttgaaagcccttgaaaagctgaga 413
Query: 353 aagaaagccgatgcccaacctgaagaaatcattgaaatagagaaaatgatctctgaggca 412
|||||||| |||||| ||||||||| |||||| ||||||||||| ||| |||||||||
Sbjct: 414 aagaaagctgatgccacacctgaagatatcattcaaatagagaaatggatttctgaggca 473
Query: 413 tacaaagccatcgacaagacagtgaaggttggcgccatgcacaggaatactggagatcat 472
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 474 tacaaagccattgacaagacagtgaaggttggcgccatgcacaggaatactggtaaccat 533
Query: 473 cgcaagtccaggcttgcaaggaggaagaaggccattgagataattcgtggttggtatgtt 532
||||||||| ||||| ||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 534 cgcaagtcccttcttgcgaggaggaagaaggccatcgagatactccgtggttggtatgtt 593
Query: 533 ccgaatgctgaacctgctgc 552
|| || ||||||||||||||
Sbjct: 594 ccaaacgctgaacctgctgc 613
Score = 63.9 bits (32), Expect = 6e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 156 cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 203
|||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 211 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 258
Score = 63.9 bits (32), Expect = 6e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 107 cgcctgtcgacctcctacgccgccttccccatcggtgggttcgg 150
|||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 147 cgcctgtccgcctcctacgccgccttccccatcggtgggatcgg 190
Score = 40.1 bits (20), Expect = 8.9
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 613 tcttgccaattttggaca-gcatatgtt 639
|||||||||||||||||| |||||||||
Sbjct: 675 tcttgccaattttggacatgcatatgtt 702
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 248 bits (125), Expect = 2e-62
Identities = 203/229 (88%)
Strand = Plus / Plus
Query: 324 aggttttcagagcccttgaaaagcttcggaagaaagccgatgcccaacctgaagaaatca 383
||||||| | ||||||||||||||| | |||||||| |||||| ||||||||| ||||
Sbjct: 27917067 aggttttgaaagcccttgaaaagctgagaaagaaagctgatgccacacctgaagatatca 27917126
Query: 384 ttgaaatagagaaaatgatctctgaggcatacaaagccatcgacaagacagtgaaggttg 443
|| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 27917127 ttcaaatagagaaatggatttctgaggcatacaaagccattgacaagacagtgaaggttg 27917186
Query: 444 gcgccatgcacaggaatactggagatcatcgcaagtccaggcttgcaaggaggaagaagg 503
|||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||
Sbjct: 27917187 gcgccatgcacaggaatactggtaaccatcgcaagtcccttcttgcgaggaggaagaagg 27917246
Query: 504 ccattgagataattcgtggttggtatgttccgaatgctgaacctgctgc 552
|||| |||||| | ||||||||||||||||| || ||||||||||||||
Sbjct: 27917247 ccatcgagatactccgtggttggtatgttccaaacgctgaacctgctgc 27917295
Score = 125 bits (63), Expect = 2e-25
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 233 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 292
||||||||||| |||||||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 27915950 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 27916009
Query: 293 cgcaaggccgagatgcgcacccggatgaagaaggt 327
||||||||||||||||||||| |||||||||||||
Sbjct: 27916010 cgcaaggccgagatgcgcaccaggatgaagaaggt 27916044
Score = 63.9 bits (32), Expect = 6e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 156 cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 203
|||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 27915867 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 27915914
Score = 56.0 bits (28), Expect = 1e-04
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 107 cgcctgtcgacctcctacgccgccttccccatcggt 142
|||||||| ||||||||||||||||||||||||||
Sbjct: 27915722 cgcctgtccgcctcctacgccgccttccccatcggt 27915757
Score = 40.1 bits (20), Expect = 8.9
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 613 tcttgccaattttggaca-gcatatgtt 639
|||||||||||||||||| |||||||||
Sbjct: 27917357 tcttgccaattttggacatgcatatgtt 27917384
>dbj|AP003335.4 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1144G04
Length = 194459
Score = 248 bits (125), Expect = 2e-62
Identities = 203/229 (88%)
Strand = Plus / Plus
Query: 324 aggttttcagagcccttgaaaagcttcggaagaaagccgatgcccaacctgaagaaatca 383
||||||| | ||||||||||||||| | |||||||| |||||| ||||||||| ||||
Sbjct: 103748 aggttttgaaagcccttgaaaagctgagaaagaaagctgatgccacacctgaagatatca 103807
Query: 384 ttgaaatagagaaaatgatctctgaggcatacaaagccatcgacaagacagtgaaggttg 443
|| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 103808 ttcaaatagagaaatggatttctgaggcatacaaagccattgacaagacagtgaaggttg 103867
Query: 444 gcgccatgcacaggaatactggagatcatcgcaagtccaggcttgcaaggaggaagaagg 503
|||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||
Sbjct: 103868 gcgccatgcacaggaatactggtaaccatcgcaagtcccttcttgcgaggaggaagaagg 103927
Query: 504 ccattgagataattcgtggttggtatgttccgaatgctgaacctgctgc 552
|||| |||||| | ||||||||||||||||| || ||||||||||||||
Sbjct: 103928 ccatcgagatactccgtggttggtatgttccaaacgctgaacctgctgc 103976
Score = 125 bits (63), Expect = 2e-25
Identities = 87/95 (91%)
Strand = Plus / Plus
Query: 233 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 292
||||||||||| |||||||||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 102631 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 102690
Query: 293 cgcaaggccgagatgcgcacccggatgaagaaggt 327
||||||||||||||||||||| |||||||||||||
Sbjct: 102691 cgcaaggccgagatgcgcaccaggatgaagaaggt 102725
Score = 63.9 bits (32), Expect = 6e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 156 cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 203
|||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 102548 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 102595
Score = 56.0 bits (28), Expect = 1e-04
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 107 cgcctgtcgacctcctacgccgccttccccatcggt 142
|||||||| ||||||||||||||||||||||||||
Sbjct: 102403 cgcctgtccgcctcctacgccgccttccccatcggt 102438
Score = 40.1 bits (20), Expect = 8.9
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 613 tcttgccaattttggaca-gcatatgtt 639
|||||||||||||||||| |||||||||
Sbjct: 104038 tcttgccaattttggacatgcatatgtt 104065
>emb|AL353671.6 | Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5'
end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide (RIG-I), the gene for tumor protein p53-binding
protein (TP53BPL), a novel gene, a DNA fragmentation
factor, 40kDa, beta polypeptide (caspase-activated DNase)
(DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene
(FLJ25547), the NDUFB6 gene for NADH dehydrogenase
(ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG
island, complete sequence
Length = 155585
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 489 caaggaggaagaaggccatt 508
||||||||||||||||||||
Sbjct: 134623 caaggaggaagaaggccatt 134604
>gb|AC152950.2 | Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J
Female) Mouse BAC Library) complete sequence
Length = 181465
Score = 40.1 bits (20), Expect = 8.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 376 agaaatcattgaaatagaga 395
||||||||||||||||||||
Sbjct: 106123 agaaatcattgaaatagaga 106142
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,315,505
Number of Sequences: 3902068
Number of extensions: 5315505
Number of successful extensions: 123860
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123643
Number of HSP's gapped (non-prelim): 217
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)