Clone Name | bags9n24 |
---|---|
Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 648 bits (327), Expect = 0.0 Identities = 378/395 (95%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 628 aaatctattgtggagtttgagaacgctagagttcttataactgatcagaagatcacaagc 687 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct: 688 ataaaggaaatcattccacttctggagcagactacacagttgagatgccctctgtttatt 747 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 748 gtagctgaggacattaccggtgaagctttggcaactcttgttgttaacaagctcagaggt 807 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 808 attattaatgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 867 Query: 251 caggatattgccatcgtgacaggtgctgaatacctagcgaaggatcttggtctgttggtt 310 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 868 caggatattgccattgtgacaggtgctgaatacctggcgaaggatcttggtctgttggtt 927 Query: 311 gagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcagactaca 370 |||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 928 gagaatgcaacagtagaccaacttgggacagcaaggaaaatcacaatccatcagactaca 987 Query: 371 accaccctcatagcagatgcagctagcaaagacga 405 || ||||||||||||||||| |||||||||||||| Sbjct: 988 acaaccctcatagcagatgcggctagcaaagacga 1022
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 349 bits (176), Expect = 4e-93 Identities = 338/392 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 ||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 823 aaatcaattgtggagtttgagaattgtaaggttcttattactgatcagaagatcacaagc 882 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||||||| |||| || ||||| |||| |||||| ||||| || || |||||| Sbjct: 883 ataaaggaaatccttccgattttggagaagaccacacagctgagagcccctctgttcatt 942 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 943 attgctgaggacattactggtgaagctttggcaactcttgttgttaacaagcttcgagga 1002 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| ||||| || || |||||||| |||||||||||||||||||| ||| Sbjct: 1003 attctcaatgttgcagcgattaaggctccaagttttggtgagcggcggaaggctgtactt 1062 Query: 251 caggatattgccatcgtgacaggtgctgaatacctagcgaaggatcttggtctgttggtt 310 ||||| ||||||||||| ||||||||||| | |||||| || ||||||||| |||||||| Sbjct: 1063 caggacattgccatcgtcacaggtgctgagttcctagcaaaagatcttggtttgttggtt 1122 Query: 311 gagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcagactaca 370 || ||||| || | || |||||||| |||||||||||| |||| || |||||||||||| Sbjct: 1123 gaaaatgctacagaggaacaacttggcacagcaaggaaagtcacgatacatcagactaca 1182 Query: 371 accaccctcatagcagatgcagctagcaaaga 402 || |||||||||||||||||||| || ||||| Sbjct: 1183 acaaccctcatagcagatgcagccagtaaaga 1214
>gb|AY108518.1| Zea mays PCO123570 mRNA sequence Length = 1387 Score = 349 bits (176), Expect = 4e-93 Identities = 338/392 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 ||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 82 aaatcaattgtggagtttgagaattgtaaggttcttattactgatcagaagatcacaagc 141 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||||||| |||| || ||||| |||| |||||| ||||| || || |||||| Sbjct: 142 ataaaggaaatccttccgattttggagaagaccacacagctgagagcccctctgttcatt 201 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 202 attgctgaggacattactggtgaagctttggcaactcttgttgttaacaagcttcgagga 261 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| ||||| || || |||||||| |||||||||||||||||||| ||| Sbjct: 262 attctcaatgttgcagcgattaaggctccaagttttggtgagcggcggaaggctgtactt 321 Query: 251 caggatattgccatcgtgacaggtgctgaatacctagcgaaggatcttggtctgttggtt 310 ||||| ||||||||||| ||||||||||| | |||||| || ||||||||| |||||||| Sbjct: 322 caggacattgccatcgtcacaggtgctgagttcctagcaaaagatcttggtttgttggtt 381 Query: 311 gagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcagactaca 370 || ||||| || | || |||||||| |||||||||||| |||| || |||||||||||| Sbjct: 382 gaaaatgctacagaggaacaacttggcacagcaaggaaagtcacgatacatcagactaca 441 Query: 371 accaccctcatagcagatgcagctagcaaaga 402 || |||||||||||||||||||| || ||||| Sbjct: 442 acaaccctcatagcagatgcagccagtaaaga 473
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 333 bits (168), Expect = 3e-88 Identities = 336/392 (85%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 |||||||| || |||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct: 347 aaatcgatcgtagagtttgagaatgctaaggttcttattactgatcagaagatcaccagc 406 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||| || ||||| | ||||| |||| |||||||||||| ||| || || ||| Sbjct: 407 ataaaggagattcttccaatcttggagaagacaacacagttgagagctccactgtttatt 466 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||| ||||||||||| || ||||||||||| |||||| |||| Sbjct: 467 attgctgaggacattactggcgaagctttggcaacccttgttgttaataagctccgagga 526 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| || ||||||||||||||||| |||||||| || |||||||||||| Sbjct: 527 attctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgcaaggctgtcctt 586 Query: 251 caggatattgccatcgtgacaggtgctgaatacctagcgaaggatcttggtctgttggtt 310 |||||||||||||| |||||||| ||||||| ||||| || || || ||| || ||||| Sbjct: 587 caggatattgccattgtgacaggcgctgaatttctagcaaaagacctgggtttgctggtt 646 Query: 311 gagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcagactaca 370 |||||||| || | ||| |||||||||||||| || ||| ||||||| |||||||||||| Sbjct: 647 gagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaatacatcagactaca 706 Query: 371 accaccctcatagcagatgcagctagcaaaga 402 || ||||||||||| ||||||||||||||||| Sbjct: 707 acaaccctcatagcggatgcagctagcaaaga 738
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 333 bits (168), Expect = 3e-88 Identities = 336/392 (85%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 |||||||| || |||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct: 818 aaatcgatcgtagagtttgagaatgctaaggttcttattactgatcagaagatcaccagc 877 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||| || ||||| | ||||| |||| |||||||||||| ||| || || ||| Sbjct: 878 ataaaggagattcttccaatcttggagaagacaacacagttgagagctccactgtttatt 937 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||| ||||||||||| || ||||||||||| |||||| |||| Sbjct: 938 attgctgaggacattactggcgaagctttggcaacccttgttgttaataagctccgagga 997 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| || ||||||||||||||||| |||||||| || |||||||||||| Sbjct: 998 attctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgcaaggctgtcctt 1057 Query: 251 caggatattgccatcgtgacaggtgctgaatacctagcgaaggatcttggtctgttggtt 310 |||||||||||||| |||||||| ||||||| ||||| || || || ||| || ||||| Sbjct: 1058 caggatattgccattgtgacaggcgctgaatttctagcaaaagacctgggtttgctggtt 1117 Query: 311 gagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcagactaca 370 |||||||| || | ||| |||||||||||||| || ||| ||||||| |||||||||||| Sbjct: 1118 gagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaatacatcagactaca 1177 Query: 371 accaccctcatagcagatgcagctagcaaaga 402 || ||||||||||| ||||||||||||||||| Sbjct: 1178 acaaccctcatagcggatgcagctagcaaaga 1209
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 325 bits (164), Expect = 6e-86 Identities = 335/392 (85%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 |||||||| || |||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct: 820 aaatcgatcgtagagtttgagaatgctaaggttcttattactgatcagaagatcaccagc 879 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||| || ||||| | ||||| |||| |||||||||||| ||| || || ||| Sbjct: 880 ataaaggagattcttccaatcttggagaagacaacacagttgagagctccactgtttatt 939 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||| ||||||||||| || ||||||||||| |||||| |||| Sbjct: 940 attgctgaggacattactggcgaagctttggcaacccttgttgttaataagctccgagga 999 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| || ||||||||||||||||| |||||||| || |||||||||||| Sbjct: 1000 attctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgcaaggctgtcctt 1059 Query: 251 caggatattgccatcgtgacaggtgctgaatacctagcgaaggatcttggtctgttggtt 310 |||||||||||||| |||||||| ||||||| ||||| || || || ||| || ||||| Sbjct: 1060 caggatattgccattgtgacaggcgctgaatttctagcaaaagacctgggtttgctggtt 1119 Query: 311 gagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcagactaca 370 |||||||| || | ||| |||||||||||||| || ||| ||||||| |||||| ||||| Sbjct: 1120 gagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaatacatcaggctaca 1179 Query: 371 accaccctcatagcagatgcagctagcaaaga 402 || ||||||||||| ||||||||||||||||| Sbjct: 1180 acaaccctcatagcggatgcagctagcaaaga 1211
>dbj|AK119223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D06, full insert sequence Length = 1119 Score = 258 bits (130), Expect = 1e-65 Identities = 232/266 (87%) Strand = Plus / Plus Query: 137 gaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggtattatt 196 |||||||||||||| ||||||||||| || ||||||||||| |||||| |||| ||| | Sbjct: 15 gaggacattactggcgaagctttggcaacccttgttgttaataagctccgaggaattctc 74 Query: 197 aacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggat 256 || ||||| || ||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct: 75 aatgttgcagcaatcaaagccccaagttttggtgagcgacgcaaggctgtccttcaggat 134 Query: 257 attgccatcgtgacaggtgctgaatacctagcgaaggatcttggtctgttggttgagaat 316 |||||||| |||||||| ||||||| ||||| || || || ||| || ||||||||||| Sbjct: 135 attgccattgtgacaggcgctgaatttctagcaaaagacctgggtttgctggttgagaat 194 Query: 317 gcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcagactacaaccacc 376 || || | ||| |||||||||||||| || ||| ||||||| |||||||||||||| ||| Sbjct: 195 gcaactgaagagcaacttgggacagcgagaaaagtcacaatacatcagactacaacaacc 254 Query: 377 ctcatagcagatgcagctagcaaaga 402 |||||||| ||||||||||||||||| Sbjct: 255 ctcatagcggatgcagctagcaaaga 280
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 230 bits (116), Expect = 3e-57 Identities = 227/264 (85%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 |||||||| || |||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct: 10294965 aaatcgatcgtagagtttgagaatgctaaggttcttattactgatcagaagatcaccagc 10295024 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||| || ||||| | ||||| |||| |||||||||||| ||| || || ||| Sbjct: 10295025 ataaaggagattcttccaatcttggagaagacaacacagttgagagctccactgtttatt 10295084 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||| ||||||||||| || ||||||||||| |||||| |||| Sbjct: 10295085 attgctgaggacattactggcgaagctttggcaacccttgttgttaataagctccgagga 10295144 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| || ||||||||||||||||| |||||||| || |||||||||||| Sbjct: 10295145 attctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgcaaggctgtcctt 10295204 Query: 251 caggatattgccatcgtgacaggt 274 |||||||||||||| ||||||||| Sbjct: 10295205 caggatattgccattgtgacaggt 10295228 Score = 113 bits (57), Expect = 5e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 306 tggttgagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcaga 365 ||||||||||||| || | ||| |||||||||||||| || ||| ||||||| ||||||| Sbjct: 10295699 tggttgagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaatacatcaga 10295758 Query: 366 ctacaaccaccctcatagcagatgcagctagcaaaga 402 ||||||| ||||||||||| ||||||||||||||||| Sbjct: 10295759 ctacaacaaccctcatagcggatgcagctagcaaaga 10295795
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 230 bits (116), Expect = 3e-57 Identities = 227/264 (85%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 |||||||| || |||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct: 10294847 aaatcgatcgtagagtttgagaatgctaaggttcttattactgatcagaagatcaccagc 10294906 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||| || ||||| | ||||| |||| |||||||||||| ||| || || ||| Sbjct: 10294907 ataaaggagattcttccaatcttggagaagacaacacagttgagagctccactgtttatt 10294966 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||| ||||||||||| || ||||||||||| |||||| |||| Sbjct: 10294967 attgctgaggacattactggcgaagctttggcaacccttgttgttaataagctccgagga 10295026 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| || ||||||||||||||||| |||||||| || |||||||||||| Sbjct: 10295027 attctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgcaaggctgtcctt 10295086 Query: 251 caggatattgccatcgtgacaggt 274 |||||||||||||| ||||||||| Sbjct: 10295087 caggatattgccattgtgacaggt 10295110 Score = 113 bits (57), Expect = 5e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 306 tggttgagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcaga 365 ||||||||||||| || | ||| |||||||||||||| || ||| ||||||| ||||||| Sbjct: 10295581 tggttgagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaatacatcaga 10295640 Query: 366 ctacaaccaccctcatagcagatgcagctagcaaaga 402 ||||||| ||||||||||| ||||||||||||||||| Sbjct: 10295641 ctacaacaaccctcatagcggatgcagctagcaaaga 10295677
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 230 bits (116), Expect = 3e-57 Identities = 227/264 (85%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 |||||||| || |||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct: 57884 aaatcgatcgtagagtttgagaatgctaaggttcttattactgatcagaagatcaccagc 57943 Query: 71 ataaaggaaatcattccacttctggagcagactacacagttgagatgtccgctattcatt 130 |||||||| || ||||| | ||||| |||| |||||||||||| ||| || || ||| Sbjct: 57944 ataaaggagattcttccaatcttggagaagacaacacagttgagagctccactgtttatt 58003 Query: 131 gtagccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggt 190 | || |||||||||||||| ||||||||||| || ||||||||||| |||||| |||| Sbjct: 58004 attgctgaggacattactggcgaagctttggcaacccttgttgttaataagctccgagga 58063 Query: 191 attattaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtcctt 250 ||| | || ||||| || ||||||||||||||||| |||||||| || |||||||||||| Sbjct: 58064 attctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgcaaggctgtcctt 58123 Query: 251 caggatattgccatcgtgacaggt 274 |||||||||||||| ||||||||| Sbjct: 58124 caggatattgccattgtgacaggt 58147 Score = 113 bits (57), Expect = 5e-22 Identities = 87/97 (89%) Strand = Plus / Plus Query: 306 tggttgagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaattcatcaga 365 ||||||||||||| || | ||| |||||||||||||| || ||| ||||||| ||||||| Sbjct: 58618 tggttgagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaatacatcaga 58677 Query: 366 ctacaaccaccctcatagcagatgcagctagcaaaga 402 ||||||| ||||||||||| ||||||||||||||||| Sbjct: 58678 ctacaacaaccctcatagcggatgcagctagcaaaga 58714
>dbj|AK061410.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B08, full insert sequence Length = 1087 Score = 206 bits (104), Expect = 4e-50 Identities = 194/224 (86%) Strand = Plus / Plus Query: 179 aagctcagaggtattattaacgttgcggcgatcaaagccccaagtttcggtgagcggcgg 238 |||||| |||| ||| | || ||||| || ||||||||||||||||| |||||||| || Sbjct: 5 aagctccgaggaattctcaatgttgcagcaatcaaagccccaagttttggtgagcgacgc 64 Query: 239 aaggctgtccttcaggatattgccatcgtgacaggtgctgaatacctagcgaaggatctt 298 |||||||||||||||||||||||||| |||||||| ||||||| ||||| || || || Sbjct: 65 aaggctgtccttcaggatattgccattgtgacaggcgctgaatttctagcaaaagacctg 124 Query: 299 ggtctgttggttgagaatgcgacggtagaccaacttgggacagcaaggaaaatcacaatt 358 ||| || ||||||||||||| || | ||| |||||||||||||| || ||| ||||||| Sbjct: 125 ggtttgctggttgagaatgcaactgaagagcaacttgggacagcgagaaaagtcacaata 184 Query: 359 catcagactacaaccaccctcatagcagatgcagctagcaaaga 402 |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 185 catcagactacaacaaccctcatagcggatgcagctagcaaaga 228
>gb|AF030515.1|AF030515 Canavalia lineata chaperonin 60 alpha subunit mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2040 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 |||||||| |||||||| || |||||||| || ||||| | ||||| |||| || || Sbjct: 965 actggtgaggctttggctacccttgttgtgaataagctgcgcggtatccttaatgtagct 1024 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| || || || ||||||||||| |||||||||||||| ||||||||||| Sbjct: 1025 gccatcaaagctcctagctttggtgagcggcgaaaggctgtccttcaagatattgccata 1084 Query: 266 gtgacaggtgctga 279 ||||||||||||| Sbjct: 1085 ttgacaggtgctga 1098
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 61.9 bits (31), Expect = 1e-06 Identities = 109/135 (80%) Strand = Plus / Plus Query: 147 ctggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcgg 206 |||| ||||||||||| ||| | ||||| |||||||| ||||| ||| | || || || | Sbjct: 961 ctggcgaagctttggcaactttagttgtcaacaagcttagaggaattctcaatgtagctg 1020 Query: 207 cgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatcg 266 |||| ||||| || | || ||||| |||| |||||| | |||||||| || ||||||| Sbjct: 1021 cgattaaagcacctggctttggtgaaaggcgtaaggctcttcttcaggacatcgccatcg 1080 Query: 267 tgacaggtgctgaat 281 | ||||||||||||| Sbjct: 1081 ttacaggtgctgaat 1095
>dbj|AK061901.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H05, full insert sequence Length = 1107 Score = 61.9 bits (31), Expect = 1e-06 Identities = 109/135 (80%) Strand = Plus / Plus Query: 147 ctggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcgg 206 |||| ||||||||||| ||| | ||||| |||||||| ||||| ||| | || || || | Sbjct: 70 ctggcgaagctttggcaactttagttgtcaacaagcttagaggaattctcaatgtagctg 129 Query: 207 cgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatcg 266 |||| ||||| || | || ||||| |||| |||||| | |||||||| || ||||||| Sbjct: 130 cgattaaagcacctggctttggtgaaaggcgtaaggctcttcttcaggacatcgccatcg 189 Query: 267 tgacaggtgctgaat 281 | ||||||||||||| Sbjct: 190 ttacaggtgctgaat 204
>ref|NM_179480.1| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.2 mRNA, complete cds Length = 2060 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagaggta 191 |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 1034 gaagctttagcgactcttgttgtaaacaagcttagaggta 1073
>ref|NM_104424.2| Arabidopsis thaliana CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding AT1G55490 (CPN60B) transcript variant AT1G55490.1 mRNA, complete cds Length = 2087 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagaggta 191 |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 1061 gaagctttagcgactcttgttgtaaacaagcttagaggta 1100
>gb|AC005223.1| Arabidopsis thaliana chromosome I BAC T5A14, complete sequence Length = 87967 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagaggta 191 |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 53651 gaagctttagcgactcttgttgtaaacaagcttagaggta 53690
>gb|AY081501.1| Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (At1g55490) mRNA, complete cds Length = 1844 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagaggta 191 |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 931 gaagctttagcgactcttgttgtaaacaagcttagaggta 970
>gb|AF386945.1|AF386945 Arabidopsis thaliana Rubisco subunit binding-protein beta subunit (T5A14.11) mRNA, complete cds Length = 2060 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagaggta 191 |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 1053 gaagctttagcgactcttgttgtaaacaagcttagaggta 1092
>emb|BX814891.1|CNS0ADZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2000 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagaggta 191 |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 1016 gaagctttagcgactcttgttgtaaacaagcttagaggta 1055
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 56.0 bits (28), Expect = 9e-05 Identities = 103/128 (80%) Strand = Plus / Plus Query: 176 aacaagctcagaggtattattaacgttgcggcgatcaaagccccaagtttcggtgagcgg 235 |||||||| ||||| ||| | || || || || |||||||| || |||| |||||| || Sbjct: 1058 aacaagcttagaggaattttaaatgtggctgcaatcaaagctcctggttttggtgagagg 1117 Query: 236 cggaaggctgtccttcaggatattgccatcgtgacaggtgctgaatacctagcgaaggat 295 || || ||| | |||||||| |||||||| || |||||||||||||| | | | || ||| Sbjct: 1118 cgtaaagctcttcttcaggacattgccattgttacaggtgctgaatatcaatccaaagat 1177 Query: 296 cttggtct 303 |||||||| Sbjct: 1178 cttggtct 1185 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 380 atagcagatgcagctagcaaagacga 405 ||||||||||| |||||||||||||| Sbjct: 1262 atagcagatgctgctagcaaagacga 1287 Score = 42.1 bits (21), Expect = 1.4 Identities = 81/101 (80%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagatcacaagc 70 ||||| ||||| ||||| || |||||| | ||||| | |||||||||||||| || Sbjct: 893 aaatctattgttgagttcgaaaatgctcggattcttgtcactgatcagaagatatcatcg 952 Query: 71 ataaaggaaatcattccacttctggagcagactacacagtt 111 ||||| ||||| ||||| || |||||||||| |||||||| Sbjct: 953 ataaaagaaattattcctctgttggagcagacaacacagtt 993
>dbj|AB236859.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C766 Length = 1971 Score = 54.0 bits (27), Expect = 4e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 ||||||||||||||||| || |||||||| || ||||| | ||||| |||| ||||| Sbjct: 927 actggtgaagctttggctacccttgttgtgaataagctacgtggtatccttaatgttgca 986 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| ||| | || |||||| | || ||||| ||||||| || ||||| || Sbjct: 987 gccatcaaagctccaggctttggtgagagacgaaaggccctccttcaagacattgctata 1046 Query: 266 gtgacaggtgc 276 |||||||||| Sbjct: 1047 ttgacaggtgc 1057 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 792 aaatcaattgttgaatttgagaatgcaagagttttgataaccgatcagaagat 844
>dbj|AB236852.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C618 Length = 1443 Score = 54.0 bits (27), Expect = 4e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 ||||||||||||||||| || |||||||| || ||||| | ||||| |||| ||||| Sbjct: 522 actggtgaagctttggctacccttgttgtgaataagctacgtggtatccttaatgttgca 581 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| ||| | || |||||| | || ||||| ||||||| || ||||| || Sbjct: 582 gccatcaaagctccaggctttggtgagagacgaaaggccctccttcaagacattgctata 641 Query: 266 gtgacaggtgc 276 |||||||||| Sbjct: 642 ttgacaggtgc 652 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 387 aaatcaattgttgaatttgagaatgcaagagttttgataaccgatcagaagat 439
>dbj|AB236850.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C580 Length = 1986 Score = 54.0 bits (27), Expect = 4e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 ||||||||||||||||| || |||||||| || ||||| | ||||| |||| ||||| Sbjct: 949 actggtgaagctttggctacccttgttgtgaataagctacgtggtatccttaatgttgca 1008 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| ||| | || |||||| | || ||||| ||||||| || ||||| || Sbjct: 1009 gccatcaaagctccaggctttggtgagagacgaaaggccctccttcaagacattgctata 1068 Query: 266 gtgacaggtgc 276 |||||||||| Sbjct: 1069 ttgacaggtgc 1079 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 814 aaatcaattgttgaatttgagaatgcaagagttttgataaccgatcagaagat 866
>dbj|AB236844.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C447 Length = 1999 Score = 54.0 bits (27), Expect = 4e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 ||||||||||||||||| || |||||||| || ||||| | ||||| |||| ||||| Sbjct: 945 actggtgaagctttggctacccttgttgtgaataagctacgtggtatccttaatgttgca 1004 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| ||| | || |||||| | || ||||| ||||||| || ||||| || Sbjct: 1005 gccatcaaagctccaggctttggtgagagacgaaaggccctccttcaagacattgctata 1064 Query: 266 gtgacaggtgc 276 |||||||||| Sbjct: 1065 ttgacaggtgc 1075 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 810 aaatcaattgttgaatttgagaatgcaagagttttgataaccgatcagaagat 862
>dbj|AB236783.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1772 Length = 2038 Score = 54.0 bits (27), Expect = 4e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 ||||||||||||||||| || |||||||| || ||||| | ||||| |||| ||||| Sbjct: 937 actggtgaagctttggctacccttgttgtgaataagctacgtggtatccttaatgttgca 996 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| ||| | || |||||| | || ||||| ||||||| || ||||| || Sbjct: 997 gccatcaaagctccaggctttggtgagagacgaaaggccctccttcaagacattgctata 1056 Query: 266 gtgacaggtgc 276 |||||||||| Sbjct: 1057 ttgacaggtgc 1067 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 802 aaatcaattgttgaatttgagaatgcaagagttttgataaccgatcagaagat 854
>dbj|AB236779.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1724 Length = 1982 Score = 54.0 bits (27), Expect = 4e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 ||||||||||||||||| || |||||||| || ||||| | ||||| |||| ||||| Sbjct: 929 actggtgaagctttggctacccttgttgtgaataagctacgtggtatccttaatgttgca 988 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| ||| | || |||||| | || ||||| ||||||| || ||||| || Sbjct: 989 gccatcaaagctccaggctttggtgagagacgaaaggccctccttcaagacattgctata 1048 Query: 266 gtgacaggtgc 276 |||||||||| Sbjct: 1049 ttgacaggtgc 1059 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 794 aaatcaattgttgaatttgagaatgcaagagttttgataaccgatcagaagat 846
>dbj|AB236775.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C1598 Length = 2018 Score = 54.0 bits (27), Expect = 4e-04 Identities = 105/131 (80%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcg 205 ||||||||||||||||| || |||||||| || ||||| | ||||| |||| ||||| Sbjct: 873 actggtgaagctttggctacccttgttgtgaataagctacgtggtatccttaatgttgca 932 Query: 206 gcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatc 265 || |||||||| ||| | || |||||| | || ||||| ||||||| || ||||| || Sbjct: 933 gccatcaaagctccaggctttggtgagagacgaaaggccctccttcaagacattgctata 992 Query: 266 gtgacaggtgc 276 |||||||||| Sbjct: 993 ttgacaggtgc 1003 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| || ||||||||||| |||||| | ||||| ||||||||||| Sbjct: 738 aaatcaattgttgaatttgagaatgcaagagttttgataaccgatcagaagat 790
>gb|AF014832.1|AF014832 Bartonella doshiae 60 kDa heat shock protein (groEL) gene, partial cds Length = 1461 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaagct 183 |||||||||||||| || ||||||||||||||||| Sbjct: 667 ggtgaagctttggcaacacttgttgttaacaagct 701
>gb|U46136.1|STU46136 Solanum tuberosum chaperonin-60 beta subunit mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2078 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagaggt 190 ||||||||||||||||||||||| || ||||| |||||| Sbjct: 965 gaagctttggcgactcttgttgtcaataagcttagaggt 1003
>gb|AY940083.1| Zymomonas mobilis subsp. francensis strain AN0101 heat shock protein Hsp60 (groEL) gene, partial cds Length = 592 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctc 184 ||||||||||| ||||| ||||||||||||||| Sbjct: 523 gaagctttggcaactctggttgttaacaagctc 555
>ref|NM_128359.3| Arabidopsis thaliana CPN60A; ATP binding / protein binding AT2G28000 (CPN60A) mRNA, complete cds Length = 2103 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 909 gagtttgagaatgctagggtattgatcactgatcagaagatcac 952
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.022 Identities = 102/128 (79%) Strand = Plus / Minus Query: 147 ctggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcgg 206 |||| ||||||||||| ||| | ||||| |||||||| ||||| ||| | || || || | Sbjct: 35979314 ctggcgaagctttggcaactttagttgtcaacaagcttagaggaattctcaatgtagctg 35979255 Query: 207 cgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatcg 266 |||| ||||| || | || ||||| |||| |||||| | |||||||| || ||||||| Sbjct: 35979254 cgattaaagcacctggctttggtgaaaggcgtaaggctcttcttcaggacatcgccatcg 35979195 Query: 267 tgacaggt 274 | |||||| Sbjct: 35979194 ttacaggt 35979187
>gb|BT008784.1| Arabidopsis thaliana At2g28000 gene, complete cds Length = 1761 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 772 gagtttgagaatgctagggtattgatcactgatcagaagatcac 815
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 48.1 bits (24), Expect = 0.022 Identities = 102/128 (79%) Strand = Plus / Minus Query: 147 ctggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcgg 206 |||| ||||||||||| ||| | ||||| |||||||| ||||| ||| | || || || | Sbjct: 40825 ctggcgaagctttggcaactttagttgtcaacaagcttagaggaattctcaatgtagctg 40766 Query: 207 cgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatcg 266 |||| ||||| || | || ||||| |||| |||||| | |||||||| || ||||||| Sbjct: 40765 cgattaaagcacctggctttggtgaaaggcgtaaggctcttcttcaggacatcgccatcg 40706 Query: 267 tgacaggt 274 | |||||| Sbjct: 40705 ttacaggt 40698
>gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2 map mi54, complete sequence Length = 94884 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Minus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 32994 gagtttgagaatgctagggtattgatcactgatcagaagatcac 32951
>dbj|AK222126.1| Arabidopsis thaliana mRNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: RAFL22-94-G01 Length = 1181 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 13 gagtttgagaatgctagggtattgatcactgatcagaagatcac 56
>gb|U49357.1|ATU49357 Arabidopsis thaliana chaperonin-60 alpha subunit gene, nuclear gene encoding plastid protein, complete cds Length = 4365 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 2079 gagtttgagaatgctagggtattgatcactgatcagaagatcac 2122
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.022 Identities = 102/128 (79%) Strand = Plus / Minus Query: 147 ctggtgaagctttggcgactcttgttgttaacaagctcagaggtattattaacgttgcgg 206 |||| ||||||||||| ||| | ||||| |||||||| ||||| ||| | || || || | Sbjct: 36069388 ctggcgaagctttggcaactttagttgtcaacaagcttagaggaattctcaatgtagctg 36069329 Query: 207 cgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcaggatattgccatcg 266 |||| ||||| || | || ||||| |||| |||||| | |||||||| || ||||||| Sbjct: 36069328 cgattaaagcacctggctttggtgaaaggcgtaaggctcttcttcaggacatcgccatcg 36069269 Query: 267 tgacaggt 274 | |||||| Sbjct: 36069268 ttacaggt 36069261
>emb|BX819680.1|CNS0A9ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZF10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2019 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 838 gagtttgagaatgctagggtattgatcactgatcagaagatcac 881
>gb|AF449763.1| Bartonella sp. SV06uk heat shock protein Hsp 60 (groEL) gene, partial cds Length = 1206 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaa 180 ||||||||||||||||| || ||||||||||| Sbjct: 502 ggtgaagctttggcgacgctcgttgttaacaa 533
>gb|AY086555.1| Arabidopsis thaliana clone 25773 mRNA, complete sequence Length = 1996 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 849 gagtttgagaatgctagggtattgatcactgatcagaagatcac 892
>gb|BT002441.1| Arabidopsis thaliana putative rubisco subunit binding-protein alpha subunit (At2g28000) mRNA, complete cds Length = 2020 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 854 gagtttgagaatgctagggtattgatcactgatcagaagatcac 897
>gb|M35597.1|ATH60CPNA A.thaliana plastid 60-kDa chaperonin-60 alpha polypeptide (cpn-60 alpha) mRNA, partial cds Length = 735 Score = 48.1 bits (24), Expect = 0.022 Identities = 39/44 (88%) Strand = Plus / Plus Query: 23 gagtttgagaatgctagagttcttataactgatcagaagatcac 66 ||||||||||||||||| || | || ||||||||||||||||| Sbjct: 574 gagtttgagaatgctagggtattgatcactgatcagaagatcac 617
>ref|NM_125033.3| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.1 mRNA, complete cds Length = 2315 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 161 gcgactcttgttgttaacaagct 183 ||||||||||||||||||||||| Sbjct: 1019 gcgactcttgttgttaacaagct 1041
>ref|NM_001037006.1| Arabidopsis thaliana ATP binding / protein binding AT5G56500 transcript variant AT5G56500.2 mRNA, complete cds Length = 2355 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 161 gcgactcttgttgttaacaagct 183 ||||||||||||||||||||||| Sbjct: 1059 gcgactcttgttgttaacaagct 1081
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 46.1 bits (23), Expect = 0.088 Identities = 119/151 (78%) Strand = Plus / Plus Query: 134 gccgaggacattactggtgaagctttggcgactcttgttgttaacaagctcagaggtatt 193 |||||||| || || || |||||| |||| ||||||||||| |||||| | ||||||| Sbjct: 955 gccgaggatatcaccggggaagctctggccactcttgttgtgaacaagttgcgaggtata 1014 Query: 194 attaacgttgcggcgatcaaagccccaagtttcggtgagcggcggaaggctgtccttcag 253 | || ||||| || |||||||| || | || ||||| || | |||||| | || || Sbjct: 1015 ctgaatgttgctgccatcaaagctcctggatttggtgaaaggagaaaggctcttctgcaa 1074 Query: 254 gatattgccatcgtgacaggtgctgaatacc 284 ||||||||||| |||||||| ||||| |||| Sbjct: 1075 gatattgccattgtgacaggagctgagtacc 1105
>emb|BX831822.1|CNS09YNB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH31ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1462 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 161 gcgactcttgttgttaacaagct 183 ||||||||||||||||||||||| Sbjct: 413 gcgactcttgttgttaacaagct 435
>dbj|AB019234.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKN22 Length = 27229 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 161 gcgactcttgttgttaacaagct 183 ||||||||||||||||||||||| Sbjct: 847 gcgactcttgttgttaacaagct 869
>gb|M35600.1|BNA60CPNB B.napus plastid 60-kDa chaperonin-60 beta-polypeptide (cpn-60 beta) mRNA, partial cds Length = 1982 Score = 46.1 bits (23), Expect = 0.088 Identities = 32/35 (91%) Strand = Plus / Plus Query: 155 gctttggcgactcttgttgttaacaagctcagagg 189 ||||| ||||| ||||||||||||||||| ||||| Sbjct: 997 gctttagcgacccttgttgttaacaagcttagagg 1031
>ref|NM_112193.1| Arabidopsis thaliana ATP binding / protein binding AT3G13470 mRNA, complete cds Length = 1922 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 actcttgttgttaacaagctcagagg 189 |||||||||||||||||||| ||||| Sbjct: 931 actcttgttgttaacaagcttagagg 956
>gb|DQ106180.1| Uncultured bacterium clone ce1_cl37_cn1 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaacaagctcagagg 189 ||||||||| | |||||| ||||||| ||||||||||| Sbjct: 493 gaagctttgtcaactcttattgttaataagctcagagg 530
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 146 actggtgaagctttggcgactcttgttgttaacaagct 183 |||||||| ||||||||||| |||||||| || ||||| Sbjct: 928 actggtgaggctttggcgacccttgttgtcaataagct 965
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15 Length = 83287 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 actcttgttgttaacaagctcagagg 189 |||||||||||||||||||| ||||| Sbjct: 44956 actcttgttgttaacaagcttagagg 44981
>gb|AF239164.1| Rhizobium leguminosarum cpn-3 (groE) operon, complete sequence Length = 2947 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 159 tggcgactcttgttgttaacaagct 183 ||||||| ||||||||||||||||| Sbjct: 2055 tggcgacgcttgttgttaacaagct 2079
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence Length = 128810 Score = 42.1 bits (21), Expect = 1.4 Identities = 45/53 (84%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatgctagagttcttataactgatcagaagat 63 ||||| ||||| |||||||| ||||||| |||| | |||| ||||||||||| Sbjct: 65997 aaatccattgtagagtttgacaatgctaaagttttggtaacggatcagaagat 66049
>gb|AY107545.1| Zea mays PCO123571 mRNA sequence Length = 830 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 11 aaatcgattgtggagtttgagaatg 35 ||||| ||||||||||||||||||| Sbjct: 806 aaatcaattgtggagtttgagaatg 830
>gb|AF014835.1|AF014835 Bartonella vinsonii 60 kDa heat shock protein (groEL) gene, partial cds Length = 1206 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaag 181 |||||||||||||| || || |||||||||||| Sbjct: 502 ggtgaagctttggcaacgctcgttgttaacaag 534
>gb|AY515128.1| Bartonella rattimassiliensis strain 16115 GroEL gene, partial cds Length = 1461 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaa 180 |||||||||||||| || ||||| |||||||| Sbjct: 587 ggtgaagctttggcaacgcttgtggttaacaa 618
>gb|AY515127.1| Bartonella rattimassiliensis strain 15908 GroEL gene, partial cds Length = 1448 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaa 180 |||||||||||||| || ||||| |||||||| Sbjct: 587 ggtgaagctttggcaacgcttgtggttaacaa 618
>gb|AF441380.1| Bacillus firmus 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 50 actgatcagaagatcacaagcataaaggaaat 81 |||||| |||||||||||||||| ||||||| Sbjct: 391 actgataagaagatcacaagcatccaggaaat 422
>gb|AC131594.10| Mus musculus chromosome 15, clone RP24-568P18, complete sequence Length = 181495 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 gaaaatcacaattcatcaga 365 |||||||||||||||||||| Sbjct: 45600 gaaaatcacaattcatcaga 45581
>gb|DQ106298.1| Uncultured bacterium clone ic0_cl13_cn1 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gccgaggacattactggtgaagct 157 ||||| |||||||||||||||||| Sbjct: 475 gccgatgacattactggtgaagct 498
>gb|DQ106229.1| Uncultured bacterium clone dl0_cl11_cn1 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gccgaggacattactggtgaagct 157 ||||| |||||||||||||||||| Sbjct: 475 gccgatgacattactggtgaagct 498
>gb|DQ106200.1| Uncultured bacterium clone ce1_cl52_cn1 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gccgaggacattactggtgaagct 157 ||||| |||||||||||||||||| Sbjct: 475 gccgatgacattactggtgaagct 498
>gb|DQ106087.1| Uncultured bacterium clone ce0_cl38_cn1 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gccgaggacattactggtgaagct 157 ||||| |||||||||||||||||| Sbjct: 475 gccgatgacattactggtgaagct 498
>gb|AY116641.1| Bartonella koehlerae heat shock protein Hsp60 (groEL) gene, partial cds Length = 1188 Score = 40.1 bits (20), Expect = 5.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaagctc 184 |||||||||||||| || || ||||| ||||||||| Sbjct: 485 ggtgaagctttggcaacgctcgttgtcaacaagctc 520
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 ggaaatcattccacttctgg 95 |||||||||||||||||||| Sbjct: 3843123 ggaaatcattccacttctgg 3843142
>emb|AL139390.15| Human DNA sequence from clone RP11-556O15 on chromosome 6p24.1-25.3 Contains part of a novel gene,, complete sequence Length = 102581 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ccaacttgggacagcaaggaaaat 351 ||||||||||||| |||||||||| Sbjct: 13913 ccaacttgggacaccaaggaaaat 13890
>gb|AF304016.1| Bartonella vinsonii subsp. arupensis heat shock protein Hsp60 (groEL) gene, partial cds Length = 1356 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaa 180 |||||||||||||| || || ||||||||||| Sbjct: 580 ggtgaagctttggcaacactcgttgttaacaa 611
>gb|AY123651.1| Lactobacillus vaginalis strain ATCC 49540 Cpn60 (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gccgaggacattactggtgaagct 157 ||||| |||||||||||||||||| Sbjct: 475 gccgatgacattactggtgaagct 498
>gb|AY332863.1| Yersinia bercovieri strain WS 39/98 60 kDa heat shock protein (HSP60) gene, partial cds Length = 517 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaaca 179 ||||| ||||||||||| |||||||||| Sbjct: 203 gaagcgttggcgactctggttgttaaca 230
>gb|AY332862.1| Yersinia bercovieri strain WS 27/96 60 kDa heat shock protein (HSP60) gene, partial cds Length = 498 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaaca 179 ||||| ||||||||||| |||||||||| Sbjct: 184 gaagcgttggcgactctggttgttaaca 211
>gb|AY332861.1| Yersinia bercovieri strain WS 19/96 60 kDa heat shock protein (HSP60) gene, partial cds Length = 557 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaaca 179 ||||| ||||||||||| |||||||||| Sbjct: 183 gaagcgttggcgactctggttgttaaca 210
>gb|AY332860.1| Yersinia bercovieri strain WE 82/87 60 kDa heat shock protein (HSP60) gene, partial cds Length = 495 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaaca 179 ||||| ||||||||||| |||||||||| Sbjct: 195 gaagcgttggcgactctggttgttaaca 222
>gb|AY332859.1| Yersinia bercovieri strain WA 17/96 60 kDa heat shock protein (HSP60) gene, partial cds Length = 528 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaaca 179 ||||| ||||||||||| |||||||||| Sbjct: 202 gaagcgttggcgactctggttgttaaca 229
>gb|AY332858.1| Yersinia bercovieri strain ATCC 43970 60 kDa heat shock protein (HSP60) gene, partial cds Length = 513 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaaca 179 ||||| ||||||||||| |||||||||| Sbjct: 180 gaagcgttggcgactctggttgttaaca 207
>gb|AY332857.1| Yersinia bercovieri strain 6519 60 kDa heat shock protein (HSP60) gene, partial cds Length = 426 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 gaagctttggcgactcttgttgttaaca 179 ||||| ||||||||||| |||||||||| Sbjct: 194 gaagcgttggcgactctggttgttaaca 221
>gb|AY837291.1| Vibrio sp. 12F04 heat shock protein 60 (hsp60) gene, partial cds Length = 541 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaa 180 |||||||| ||||||||||| ||||| ||||| Sbjct: 501 ggtgaagcgttggcgactctggttgtgaacaa 532
>gb|AC008974.7|AC008974 Homo sapiens chromosome 19 clone LLNLF-116A8, complete sequence Length = 38000 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggatcttggtctgttggtt 310 |||||||||||||||||||| Sbjct: 24212 aggatcttggtctgttggtt 24193
>gb|AC020922.9| Homo sapiens chromosome 19 clone CTD-2105E13, complete sequence Length = 134793 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggatcttggtctgttggtt 310 |||||||||||||||||||| Sbjct: 3769 aggatcttggtctgttggtt 3750
>gb|AF215852.1|AF215852 Nicotiana tabacum hexose transporter (pGlcT) mRNA, partial cds; nuclear gene for chloroplast product Length = 1795 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 tgaatacctagcgaaggatcttgg 300 |||||||||||| ||||||||||| Sbjct: 355 tgaatacctagctaaggatcttgg 378
>gb|AY940082.1| Zymomonas mobilis subsp. pomaceae strain LMG 5993 heat shock protein Hsp60 (groEL) gene, partial cds Length = 592 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaa 180 |||||||||||||| || || ||||||||||| Sbjct: 520 ggtgaagctttggcaaccctcgttgttaacaa 551
>gb|AY940081.1| Zymomonas mobilis subsp. pomaceae strain LMG 448 heat shock protein Hsp60 (groEL) gene, partial cds Length = 592 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 149 ggtgaagctttggcgactcttgttgttaacaa 180 |||||||||||||| || || ||||||||||| Sbjct: 520 ggtgaagctttggcaaccctcgttgttaacaa 551
>gb|AF405420.1| Pediococcus inopinatus clone P37 HSP60 gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 134 gccgaggacattactggtgaagctttggcgactcttgttgttaacaag 181 ||||| || |||||||||||||||||| | || |||||| | |||||| Sbjct: 475 gccgatgatattactggtgaagctttgccaacccttgttttgaacaag 522
>gb|AF429661.1| Lactobacillus plantarum strain ATCC 8014 60 kDa heat shock protein (HSP60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gacattactggtgaagcttt 159 |||||||||||||||||||| Sbjct: 481 gacattactggtgaagcttt 500 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,164,723 Number of Sequences: 3902068 Number of extensions: 3164723 Number of successful extensions: 48647 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 48480 Number of HSP's gapped (non-prelim): 166 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)