ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STAT1_HUMAN (P42224) Signal transducer and activator of transcri... 30 2.5
2T2R14_MACMU (Q645T2) Taste receptor type 2 member 14 (T2R14) 29 4.3
3STAT1_PIG (Q764M5) Signal transducer and activator of transcript... 29 5.7
4DNBI_VZVD (P09246) Major DNA-binding protein 28 9.7
5NDHF_BACSU (P39755) Probable NADH-quinone oxidoreductase subunit... 28 9.7
6IF3_CLOAB (Q97GK5) Translation initiation factor IF-3 28 9.7

>STAT1_HUMAN (P42224) Signal transducer and activator of transcription|
           1-alpha/beta (Transcription factor ISGF-3 components
           p91/p84)
          Length = 750

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 151 PQTLLGGVELSVKRRLRGRRTEIDYKFPSRKLYDPPTVLVLALFYHSDVSVLDSRTKLAQ 330
           P  L  GV+ +VK RL  +  E++Y    + L+D        +      ++L + TK+  
Sbjct: 332 PLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLFDKDVNERNTVKGFRKFNILGTHTKVMN 391

Query: 331 F*QSINGMLQGLF 369
             +S NG L   F
Sbjct: 392 MEESTNGSLAAEF 404



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>T2R14_MACMU (Q645T2) Taste receptor type 2 member 14 (T2R14)|
          Length = 319

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 302 CSIAELNWLNFDNRSMVCFKGCFMFVPITSPIAPSTLLSF 421
           CS A  N++ F +R++      F+ +P T  +A S LLSF
Sbjct: 165 CSSASCNFIRF-SRAIALTSTVFVLIPFTLSLATSLLLSF 203



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>STAT1_PIG (Q764M5) Signal transducer and activator of transcription 1|
          Length = 757

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +1

Query: 151 PQTLLGGVELSVKRRLRGRRTEIDYKFPSRKLYDPPTVLVLALFYHSDVSVLDSRTKLAQ 330
           P  L  GV+ +VK RL  +  +++Y    + L+D        +      ++L + TK+  
Sbjct: 332 PLVLKTGVQFTVKLRLLVKLQKLNYNLKVKVLFDKDVSERNTVKGFRKFNILGTHTKVMN 391

Query: 331 F*QSINGMLQGLF 369
             +S NG L   F
Sbjct: 392 MEESTNGSLAAEF 404



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>DNBI_VZVD (P09246) Major DNA-binding protein|
          Length = 1204

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 156 LRRNLDHFDPAVSVXHGGSFNAINRAAAP*LHTTCGA 46
           L+    HF P+V V HGG  + +  +AAP L   C A
Sbjct: 80  LKLTTSHFYPSVFVFHGGK-HVLPSSAAPNLTRACNA 115



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>NDHF_BACSU (P39755) Probable NADH-quinone oxidoreductase subunit 5 (EC|
           1.6.99.5) (NADH dehydrogenase subunit 5)
          Length = 505

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 269 YSLCFTIVTYRCSIAELNWLNFDNRSMVCFKG 364
           Y   FT+ T+    A + WL+ D R MV F G
Sbjct: 102 YRKYFTLFTFTTGAASMTWLSGDLRLMVLFWG 133



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>IF3_CLOAB (Q97GK5) Translation initiation factor IF-3|
          Length = 175

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 148 APQTLLGGVELSVKRRLRGRRTEIDYKFPSRKLYDPPTVLVLALFYH--SDVSVLDSRTK 321
           A + L+ G ++ V  R RGR+T  DY F  RK+ D         F+   +DV V++   K
Sbjct: 111 ARKFLIAGDKVKVAVRFRGRQT--DYAFKGRKILDN--------FFEKINDVGVIEKPAK 160

Query: 322 L 324
           L
Sbjct: 161 L 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,891,415
Number of Sequences: 219361
Number of extensions: 1235079
Number of successful extensions: 2495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2495
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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