ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags9n17 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 45.1 bits (105), Expect = 2e-04 Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 2/156 (1%) Frame = +2 Query: 131 IRERPYKLSELDYSYLLEFTAKVHGISEAESLFLRIPQEYRN--ELLYNNLVMACLELGL 304 +R++ + + Y ++ K + +A F ++ E + ++YN+L+ Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456 Query: 305 IKLSYGYMRKMRELSLTISPYVFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNI 484 + + + +M + + ++ FN +I H EGR K+ M V P+ TYN Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516 Query: 485 LLKIQANEHSIDGVARVFSDMKRAKIEPNEITYGIL 592 L+ +D ++ S M ++PN +TY L Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552 Score = 40.4 bits (93), Expect = 0.005 Identities = 30/144 (20%), Positives = 65/144 (45%), Gaps = 8/144 (5%) Frame = +2 Query: 185 FTAKVHGI------SEAESLFLRIPQE--YRNELLYNNLVMACLELGLIKLSYGYMRKMR 340 + + +HG+ AE L L + N + +N+++ + + G + S M Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503 Query: 341 ELSLTISPYVFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLKIQANEHSID 520 + + + +N LI + G+ K+L+ M + + P+T TY+ L+ ++ Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563 Query: 521 GVARVFSDMKRAKIEPNEITYGIL 592 +F +M+ + + P+ ITY I+ Sbjct: 564 DALVLFKEMESSGVSPDIITYNII 587 Score = 40.4 bits (93), Expect = 0.005 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 2/144 (1%) Frame = +2 Query: 167 YSYLLEFTAKVHGISEAESLFLRIPQE-YRNELL-YNNLVMACLELGLIKLSYGYMRKMR 340 YS L+++ K EA +F + + + E+ Y L+ G + +G + M Sbjct: 304 YSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363 Query: 341 ELSLTISPYVFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLKIQANEHSID 520 + YVF+ LI ++ +G+ + ++M+ + P+ TY ++ I ++ Sbjct: 364 RNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423 Query: 521 GVARVFSDMKRAKIEPNEITYGIL 592 F M + P I Y L Sbjct: 424 DAMLYFEQMIDEGLSPGNIVYNSL 447 Score = 39.3 bits (90), Expect = 0.011 Identities = 27/116 (23%), Positives = 51/116 (43%) Frame = +2 Query: 260 LLYNNLVMACLELGLIKLSYGYMRKMRELSLTISPYVFNRLIILHSSEGRRKTISKILAQ 439 + YN+++ G K + G+++KMR + ++ L+ GR KI Sbjct: 267 MTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDS 326 Query: 440 MKASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKRAKIEPNEITYGILAISHA 607 M + P +TY LL+ A + ++ + + M R I P+ + IL ++A Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYA 382 Score = 37.0 bits (84), Expect = 0.056 Identities = 31/151 (20%), Positives = 69/151 (45%), Gaps = 2/151 (1%) Frame = +2 Query: 167 YSYLLEFTAKVHGISEAESLFLRIPQE--YRNELLYNNLVMACLELGLIKLSYGYMRKMR 340 +S L+ AK + +A +F ++ Q+ N + Y ++ + G ++ + Y +M Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433 Query: 341 ELSLTISPYVFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLKIQANEHSID 520 + L+ V+N LI + + + +++ +M + +T +N ++ E + Sbjct: 434 DEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 493 Query: 521 GVARVFSDMKRAKIEPNEITYGILAISHAVA 613 ++F M R ++PN ITY L + +A Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLA 524 Score = 32.7 bits (73), Expect = 1.1 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%) Frame = +2 Query: 137 ERPYKLSELDYSYLLEFTAKVHGISEAESLF---LRIPQEYRNELLYNNLVMACLELGLI 307 +R L+ + ++ +++ K + E+E LF +RI + N + YN L+ G + Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVK-PNVITYNTLINGYCLAGKM 527 Query: 308 KLSYGYMRKMRELSLTISPYVFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNIL 487 + + M + L + ++ LI + R + + +M++S V+P TYNI+ Sbjct: 528 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587 Query: 488 LK 493 L+ Sbjct: 588 LQ 589
>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1| Length = 700 Score = 42.0 bits (97), Expect = 0.002 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 6/154 (3%) Frame = +2 Query: 209 SEAESLFLRIPQEYRNEL---LYNNLVMACLELGLIKLSYGYMRKMRELSLTISPYVFNR 379 S AESL L + E++ E +N LV +LG ++ + + + + L + F Sbjct: 501 SPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCN 560 Query: 380 LIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKRAK 559 L I R K ++L MK S+VTP+T Y+ L+ + + + + DMK+ + Sbjct: 561 LAI---GCHRPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNR 617 Query: 560 IEPNEITYGILAISHAVARL---YTVSQTYIEAI 652 + NE+ L + Y TY+E I Sbjct: 618 VPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKI 651
>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1| Length = 698 Score = 41.2 bits (95), Expect = 0.003 Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 6/154 (3%) Frame = +2 Query: 209 SEAESLFLRIPQEYRNEL---LYNNLVMACLELGLIKLSYGYMRKMRELSLTISPYVFNR 379 S AESL L + E++ E +N LV +LG ++ + + + + L + F Sbjct: 499 SPAESLLLALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCN 558 Query: 380 LIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKRAK 559 L I R K ++L MK S+VTP++ Y+ L+ + + + + DMK+ + Sbjct: 559 LAI---GCHRPKDGLQLLTDMKKSQVTPNSHIYSALINAAVRKLNYTYLINILKDMKQNR 615 Query: 560 IEPNEITYGILAISHAVARL---YTVSQTYIEAI 652 + NE+ L + Y TY+E I Sbjct: 616 VPVNEVVIRQLEFAAQYPPTFDRYQGKNTYLEKI 649
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 38.1 bits (87), Expect = 0.025 Identities = 30/116 (25%), Positives = 53/116 (45%) Frame = +2 Query: 266 YNNLVMACLELGLIKLSYGYMRKMRELSLTISPYVFNRLIILHSSEGRRKTISKILAQMK 445 YN L+ L+ ++ KM E ++ + + RLI + + G + SKIL MK Sbjct: 44 YNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMK 103 Query: 446 ASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKRAKIEPNEITYGILAISHAVA 613 + + ++ L+ A ++ + + M+ A IEP TY LA+ +A A Sbjct: 104 TKDLPVTEAVFSALVTGHARAGDMENAENILTVMRDAGIEPGPDTY--LALLNAYA 157
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 37.0 bits (84), Expect = 0.056 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Frame = +2 Query: 266 YNNLVMACLELGLIKLSYGYMRKMRELS-LTISPYVFNRLIILHSSEGRRKTISKILAQM 442 YN L+ +LG + ++ + K +L+ L P +N L+ G ++ +M Sbjct: 121 YNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFKEM 180 Query: 443 KASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKRAKIEPNEITY-GILAISHAVARL 619 + SR P TYNIL+ + + +++K++ PN +TY IL + R+ Sbjct: 181 Q-SRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRI 239 Query: 620 YTVSQTYIE 646 Q ++E Sbjct: 240 RRGLQLFLE 248 Score = 32.3 bits (72), Expect = 1.4 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Frame = +2 Query: 266 YNNLVMACLELGLIKLSYGYMRKMRELSLTISPYVFNRLIILHS-SEGRRKTISK-ILAQ 439 YN L+ A + G I + + +E+ P + I+++ + RR +K +L + Sbjct: 157 YNVLLDALCKCGYIDNA---LELFKEMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTE 213 Query: 440 MKASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKR 553 +K S TP+ TY +LK+ I ++F +MKR Sbjct: 214 LKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKR 251 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Frame = +2 Query: 266 YNNLVMACLELGLIKLSYGYMRKMRELSLTISPYVFNRLIILHSSEGRRKTISKIL---A 436 YN L+ I+ +Y R+MR+ + +N LI + RR + +L Sbjct: 51 YNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLI---AGAARRLMLDHVLYLFD 107 Query: 437 QMKASRVTPHTSTYNILL--KIQANEHSIDGVARVFSDMKRAKIEPNEITYGIL 592 +M + P +YN L+ + +H + ++ D++ A + P TY +L Sbjct: 108 EMLEWGIYPDLWSYNTLMCCYFKLGKHE-EAFRVLYKDLQLAGLNPGPDTYNVL 160
>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein| Length = 1863 Score = 37.0 bits (84), Expect = 0.056 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +2 Query: 386 ILHSSEGRRKTISKILAQMKASRVTPHTST-YNILLKIQANEHSIDGVARVFSDMKRAKI 562 + HS KT +L +M++ ++ P Y IL+++ RV +M++A I Sbjct: 782 VCHSKVRALKTAYDVLKKMQSKKMDPPDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGI 841 Query: 563 EPNEITYG 586 +PN ITYG Sbjct: 842 DPNAITYG 849
>AEP3_KLULA (Q6CIF3) ATPase expression protein 3| Length = 593 Score = 35.0 bits (79), Expect = 0.21 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = +2 Query: 368 VFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLK 493 VFN +I + ++ T ++ AQMK+ + P+ TYN++L+ Sbjct: 215 VFNDVIYYYGNKNNFATCRELYAQMKSEGIAPNVQTYNLMLR 256
>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor| Length = 965 Score = 33.9 bits (76), Expect = 0.47 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 368 VFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLKIQANEHSIDGVARVFSDM 547 V L+ H G K +TP T+T+ I+LK+ + +DG R+ + Sbjct: 383 VLQSLLYAHYKVGDFAACFSHFELFKKYDITPSTATHTIMLKVYRGLNDLDGAFRI---L 439 Query: 548 KRAKIEPN-EITYGILAI 598 KR +P+ EIT G A+ Sbjct: 440 KRLSEDPSVEITEGHFAL 457
>AEP3_YEAST (Q12089) ATPase expression protein 3| Length = 606 Score = 33.1 bits (74), Expect = 0.81 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +2 Query: 359 SPYVFNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLK-------IQANEHSI 517 S V+N I S + +I AQMKA P+T T+N+LL+ I+ +H Sbjct: 220 SAQVYNDSIYFFSEHFDFASCREIFAQMKAEGTKPNTITFNLLLRNVVKNSHIRKTKHPD 279 Query: 518 DGVARVFSDMKRAKIEPNEITY 583 D V M+ + + IT+ Sbjct: 280 DEVLFYLRSMRNHGVFADVITW 301
>AEP3_CANGA (Q6FKT1) ATPase expression protein 3| Length = 623 Score = 32.7 bits (73), Expect = 1.1 Identities = 15/40 (37%), Positives = 24/40 (60%) Frame = +2 Query: 371 FNRLIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILL 490 +N ++ +S + T ++ AQMK P+T+TYNILL Sbjct: 221 YNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILL 260
>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1| Length = 695 Score = 32.3 bits (72), Expect = 1.4 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 6/154 (3%) Frame = +2 Query: 209 SEAESLFLRIPQEYRNEL---LYNNLVMACLELGLIKLSYGYMRKMRELSLTISPYVFNR 379 S AES L + +R E +N L+ +LG ++ + + + + + + F Sbjct: 499 SAAESSLLSVLDRHRVEADVTFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCN 558 Query: 380 LIILHSSEGRRKTISKILAQMKASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKRAK 559 L I R + ++LA MK S+V+P+ Y+ L+ + + + DM++ Sbjct: 559 LAI---GCHRPRDGMQLLADMKKSQVSPNIHIYSTLINAALKKLDYTYLISILKDMRQNS 615 Query: 560 IEPNEITYGILAISHAVARL---YTVSQTYIEAI 652 + NE+ L + Y TY+E I Sbjct: 616 VPVNEVVVRQLEFAAEYPPTFDRYKGKNTYLEKI 649 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +2 Query: 440 MKASRVTPHTSTYNILLKIQANEHSIDGVARVFSDMKRAKIEPNEITYGIL 592 +K R+ P Y +L+ + R+F+DMK+ +EP++ TY L Sbjct: 162 LKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTAL 212
>RS8_THEMA (Q9ZAE5) 30S ribosomal protein S8| Length = 134 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/53 (30%), Positives = 28/53 (52%) Frame = +2 Query: 506 EHSIDGVARVFSDMKRAKIEPNEITYGILAISHAVARLYTVSQTYIEAIKNSM 664 E G+ RV+ K + + +GI+ +SHA R+Y V + +I +KN + Sbjct: 52 EDGKQGILRVYLKYKGGRKNRERVIHGIVRVSHAGRRIY-VDKDHIPKVKNGL 103
>YR578_MIMIV (Q5UR94) Putative ankyrin repeat protein R578| Length = 433 Score = 30.0 bits (66), Expect = 6.9 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Frame = +2 Query: 164 DYSYLLEFTAKVHGISEAESLFLRIPQEYRNELLYNNLVMA--------CLELGLI--KL 313 D SYLLE + + +F P EY E++ N V+ +E G I + Sbjct: 137 DVSYLLESVMQYRQNDTTKLIFNMFPSEYNKEIILRNAVITNNLEMLEFAIEKGAILSET 196 Query: 314 SYGYMRKMRELSLTISPYVFNRL 382 + ++ +R +L + Y+F+ + Sbjct: 197 DHLIVQSIRTSNLDLIKYIFSHI 219
>SLD5_YEAST (Q03406) DNA replication complex GINS protein SLD5| Length = 294 Score = 30.0 bits (66), Expect = 6.9 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Frame = +2 Query: 461 PHTSTYNILLKIQANEHSIDGVARVFSDMKRAKIE----PNEITYGILAISHAVARLYTV 628 PH +L +I I+ ++ F DM+ A PNE +L + + RL V Sbjct: 80 PHQLMKRLLNRISMQSQLIENISMGFLDMQNASNANPPMPNESKLPLLCMETELERLKFV 139 Query: 629 SQTYIEAIKNSMDRY 673 ++YI + +D++ Sbjct: 140 IRSYIRCRLSKIDKF 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,296,550 Number of Sequences: 219361 Number of extensions: 1818172 Number of successful extensions: 4361 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4352 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
