ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9n17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 482 bits (243), Expect = e-133 Identities = 447/515 (86%) Strand = Plus / Plus Query: 134 agagagagaccctacaagctgagtgagcttgattactcgtatctcctagagttcacggct 193 |||||||| ||||||||||| |||||||| |||||||| |||||||| |||||||| ||| Sbjct: 3676645 agagagaggccctacaagcttagtgagctagattactcatatctcctggagttcacagct 3676704 Query: 194 aaagttcacggcatttctgaagccgagagcctcttcctccgtatacctcaagaataccgg 253 |||||||| |||||||||||||| || ||||||||||| || |||||||||||||||| | Sbjct: 3676705 aaagttcatggcatttctgaagctgaaagcctcttccttcgcatacctcaagaataccag 3676764 Query: 254 aatgagctgctctacaataaccttgtaatggcttgtttggagctgggcttgattaagctt 313 ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 3676765 aatgagctgctgtacaacaaccttgttatggcttgtttggatttgggcttgattaagctt 3676824 Query: 314 tcttatggttacatgaggaagatgagggaactgtccctgacaatttcgccgtatgttttc 373 | |||||||||| ||||||||||||||||||||| || | ||||| || ||||| | | Sbjct: 3676825 gcatatggttacaagaggaagatgagggaactgtcgttgccgatttcaccatatgtatac 3676884 Query: 374 aaccgcttgattatcctccattcttctgaggggcgtaggaagactatctccaaaatcctc 433 ||||| ||||| ||||||||||||||| |||||| ||| ||||| ||||| |||||| Sbjct: 3676885 aaccggttgatcatcctccattcttctccagggcgtcagaaaactatttccaagatcctc 3676944 Query: 434 gctcagatgaaagccagtagagtaaccccccacacgtcaacctacaacatcttactgaaa 493 ||||||||||||| | | | || ||||| ||||||||||||||||||||| ||||||| Sbjct: 3676945 gctcagatgaaaggcgatcgtgtgacccctcacacgtcaacctacaacatcctactgaag 3677004 Query: 494 atacaggccaatgagcacagtattgatggagtggcgagggtgttcagtgatatgaaaaga 553 ||| |||||||||| |||| || ||||| ||||||||||| |||| ||||||||| ||| Sbjct: 3677005 ataaaggccaatgaacacaacatcgatggtgtggcgagggttttcaatgatatgaagaga 3677064 Query: 554 gcaaagattgagccaaatgagatcacttatggcattctagctatttcgcatgctgtagca 613 ||||| | |||||||| |||||||| |||||||||||||| ||| | |||||||||||| Sbjct: 3677065 gcaaaagtcgagccaaacgagatcacctatggcattctagcaattgcacatgctgtagca 3677124 Query: 614 aggctatatactgtttcccagacatatatagaagc 648 ||| | |||||||||||||| |||||| ||||||| Sbjct: 3677125 aggttgtatactgtttcccatacatatgtagaagc 3677159 Score = 97.6 bits (49), Expect = 5e-17 Identities = 101/117 (86%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 1 tgtgcgcggccattcgggggtggnatggccgccggccgcgctgtgcatcgcggccacatc 60 ||||||| ||||| ||||||||| |||| || ||||||||| ||||| ||||| ||| || Sbjct: 3675957 tgtgcgccgccatccgggggtgg-atgggcgacggccgcgccgtgcaccgcgggcacgtc 3676015 Query: 61 tttcacgccatcaaccgcctccgacgccgccgcctccatcgcaccggactccaggtc 117 || |||||| ||||||||||||| |||||||||||||| ||| ||| ||||||||| Sbjct: 3676016 ttccacgccgtcaaccgcctccgccgccgccgcctccaccgcgccgccctccaggtc 3676072
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 482 bits (243), Expect = e-133 Identities = 447/515 (86%) Strand = Plus / Plus Query: 134 agagagagaccctacaagctgagtgagcttgattactcgtatctcctagagttcacggct 193 |||||||| ||||||||||| |||||||| |||||||| |||||||| |||||||| ||| Sbjct: 142 agagagaggccctacaagcttagtgagctagattactcatatctcctggagttcacagct 201 Query: 194 aaagttcacggcatttctgaagccgagagcctcttcctccgtatacctcaagaataccgg 253 |||||||| |||||||||||||| || ||||||||||| || |||||||||||||||| | Sbjct: 202 aaagttcatggcatttctgaagctgaaagcctcttccttcgcatacctcaagaataccag 261 Query: 254 aatgagctgctctacaataaccttgtaatggcttgtttggagctgggcttgattaagctt 313 ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 262 aatgagctgctgtacaacaaccttgttatggcttgtttggatttgggcttgattaagctt 321 Query: 314 tcttatggttacatgaggaagatgagggaactgtccctgacaatttcgccgtatgttttc 373 | |||||||||| ||||||||||||||||||||| || | ||||| || ||||| | | Sbjct: 322 gcatatggttacaagaggaagatgagggaactgtcgttgccgatttcaccatatgtatac 381 Query: 374 aaccgcttgattatcctccattcttctgaggggcgtaggaagactatctccaaaatcctc 433 ||||| ||||| ||||||||||||||| |||||| ||| ||||| ||||| |||||| Sbjct: 382 aaccggttgatcatcctccattcttctccagggcgtcagaaaactatttccaagatcctc 441 Query: 434 gctcagatgaaagccagtagagtaaccccccacacgtcaacctacaacatcttactgaaa 493 ||||||||||||| | | | || ||||| ||||||||||||||||||||| ||||||| Sbjct: 442 gctcagatgaaaggcgatcgtgtgacccctcacacgtcaacctacaacatcctactgaag 501 Query: 494 atacaggccaatgagcacagtattgatggagtggcgagggtgttcagtgatatgaaaaga 553 ||| |||||||||| |||| || ||||| ||||||||||| |||| ||||||||| ||| Sbjct: 502 ataaaggccaatgaacacaacatcgatggtgtggcgagggttttcaatgatatgaagaga 561 Query: 554 gcaaagattgagccaaatgagatcacttatggcattctagctatttcgcatgctgtagca 613 ||||| | |||||||| |||||||| |||||||||||||| ||| | |||||||||||| Sbjct: 562 gcaaaagtcgagccaaacgagatcacctatggcattctagcaattgcacatgctgtagca 621 Query: 614 aggctatatactgtttcccagacatatatagaagc 648 ||| | |||||||||||||| |||||| ||||||| Sbjct: 622 aggttgtatactgtttcccatacatatgtagaagc 656
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 482 bits (243), Expect = e-133 Identities = 447/515 (86%) Strand = Plus / Plus Query: 134 agagagagaccctacaagctgagtgagcttgattactcgtatctcctagagttcacggct 193 |||||||| ||||||||||| |||||||| |||||||| |||||||| |||||||| ||| Sbjct: 155151 agagagaggccctacaagcttagtgagctagattactcatatctcctggagttcacagct 155210 Query: 194 aaagttcacggcatttctgaagccgagagcctcttcctccgtatacctcaagaataccgg 253 |||||||| |||||||||||||| || ||||||||||| || |||||||||||||||| | Sbjct: 155211 aaagttcatggcatttctgaagctgaaagcctcttccttcgcatacctcaagaataccag 155270 Query: 254 aatgagctgctctacaataaccttgtaatggcttgtttggagctgggcttgattaagctt 313 ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 155271 aatgagctgctgtacaacaaccttgttatggcttgtttggatttgggcttgattaagctt 155330 Query: 314 tcttatggttacatgaggaagatgagggaactgtccctgacaatttcgccgtatgttttc 373 | |||||||||| ||||||||||||||||||||| || | ||||| || ||||| | | Sbjct: 155331 gcatatggttacaagaggaagatgagggaactgtcgttgccgatttcaccatatgtatac 155390 Query: 374 aaccgcttgattatcctccattcttctgaggggcgtaggaagactatctccaaaatcctc 433 ||||| ||||| ||||||||||||||| |||||| ||| ||||| ||||| |||||| Sbjct: 155391 aaccggttgatcatcctccattcttctccagggcgtcagaaaactatttccaagatcctc 155450 Query: 434 gctcagatgaaagccagtagagtaaccccccacacgtcaacctacaacatcttactgaaa 493 ||||||||||||| | | | || ||||| ||||||||||||||||||||| ||||||| Sbjct: 155451 gctcagatgaaaggcgatcgtgtgacccctcacacgtcaacctacaacatcctactgaag 155510 Query: 494 atacaggccaatgagcacagtattgatggagtggcgagggtgttcagtgatatgaaaaga 553 ||| |||||||||| |||| || ||||| ||||||||||| |||| ||||||||| ||| Sbjct: 155511 ataaaggccaatgaacacaacatcgatggtgtggcgagggttttcaatgatatgaagaga 155570 Query: 554 gcaaagattgagccaaatgagatcacttatggcattctagctatttcgcatgctgtagca 613 ||||| | |||||||| |||||||| |||||||||||||| ||| | |||||||||||| Sbjct: 155571 gcaaaagtcgagccaaacgagatcacctatggcattctagcaattgcacatgctgtagca 155630 Query: 614 aggctatatactgtttcccagacatatatagaagc 648 ||| | |||||||||||||| |||||| ||||||| Sbjct: 155631 aggttgtatactgtttcccatacatatgtagaagc 155665 Score = 97.6 bits (49), Expect = 5e-17 Identities = 101/117 (86%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 1 tgtgcgcggccattcgggggtggnatggccgccggccgcgctgtgcatcgcggccacatc 60 ||||||| ||||| ||||||||| |||| || ||||||||| ||||| ||||| ||| || Sbjct: 154463 tgtgcgccgccatccgggggtgg-atgggcgacggccgcgccgtgcaccgcgggcacgtc 154521 Query: 61 tttcacgccatcaaccgcctccgacgccgccgcctccatcgcaccggactccaggtc 117 || |||||| ||||||||||||| |||||||||||||| ||| ||| ||||||||| Sbjct: 154522 ttccacgccgtcaaccgcctccgccgccgccgcctccaccgcgccgccctccaggtc 154578
>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete sequence Length = 163279 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Minus Query: 76 cgcctccgacgccgccgcctccatcgcaccg 106 |||| ||| |||||||||||||||||||||| Sbjct: 33945 cgccgccgccgccgccgcctccatcgcaccg 33915
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Plus Query: 76 cgcctccgacgccgccgcctccatcgcaccg 106 |||| ||| |||||||||||||||||||||| Sbjct: 17338334 cgccgccgccgccgccgcctccatcgcaccg 17338364 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgc 93 |||||||||||||||||||| Sbjct: 19093964 accgcctccgacgccgccgc 19093945 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 19064375 ccgcctccgccgccgccgcctcca 19064398 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 19050103 ccgcctccgccgccgccgcctcca 19050126
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Plus Query: 76 cgcctccgacgccgccgcctccatcgcaccg 106 |||| ||| |||||||||||||||||||||| Sbjct: 17347374 cgccgccgccgccgccgcctccatcgcaccg 17347404 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgc 93 |||||||||||||||||||| Sbjct: 19105240 accgcctccgacgccgccgc 19105221 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 19075629 ccgcctccgccgccgccgcctcca 19075652 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 19061357 ccgcctccgccgccgccgcctcca 19061380
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 gccacatctttcacgccatca 73 ||||||||||||||||||||| Sbjct: 230495 gccacatctttcacgccatca 230475
>emb|X87093.1|SFURDABCF S.fradiae urdE,F,A,B,C,D genes Length = 5700 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 76 cgcctccgacgccgccgcctccatc 100 |||||||||| |||||||||||||| Sbjct: 5615 cgcctccgacaccgccgcctccatc 5639
>gb|AY956334.1| Streptomyces aureofaciens strain CCM3239 auricin biosynthesis gene cluster, partial sequence Length = 17455 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 tccgacgccgccgcctccatc 100 ||||||||||||||||||||| Sbjct: 9666 tccgacgccgccgcctccatc 9686
>gb|AC108172.1| Homo sapiens chromosome 5 clone RP11-171P23, complete sequence Length = 190619 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 aggaagatgagggaactgtcc 349 ||||||||||||||||||||| Sbjct: 106674 aggaagatgagggaactgtcc 106694
>gb|AC008869.5| Homo sapiens chromosome 5 clone CTD-2194L12, complete sequence Length = 227979 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 329 aggaagatgagggaactgtcc 349 ||||||||||||||||||||| Sbjct: 21246 aggaagatgagggaactgtcc 21266
>gb|AY033994.1| Streptomyces aureofaciens type-II polyketide gene cluster, partial sequence Length = 9531 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 80 tccgacgccgccgcctccatc 100 ||||||||||||||||||||| Sbjct: 4414 tccgacgccgccgcctccatc 4394
>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12, U80A7, U153E6, L35485, and R7-163A8 containing iduronate 2-sulfatase gene and pseudogene, complete sequence Length = 326663 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 cctacaagctgagtgagcttg 164 ||||||||||||||||||||| Sbjct: 68226 cctacaagctgagtgagcttg 68246
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 gccacatctttcacgccatca 73 ||||||||||||||||||||| Sbjct: 259161 gccacatctttcacgccatca 259141
>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome Length = 1469720 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tgtttggagctgggcttgat 306 |||||||||||||||||||| Sbjct: 218839 tgtttggagctgggcttgat 218858
>gb|AC133586.12| Mus musculus chromosome 15, clone RP24-456H16, complete sequence Length = 149834 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 catgctgtagcaaggctata 621 |||||||||||||||||||| Sbjct: 20760 catgctgtagcaaggctata 20741
>ref|XM_550352.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2039 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgcctcc 97 |||||||||| ||||||||||||| Sbjct: 296 accgcctccgccgccgccgcctcc 273
>ref|XM_475891.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1401 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 235 ccgcctccgacgccgccgcc 216
>ref|NM_197298.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0005K07.12), mRNA Length = 804 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgc 93 |||||||||||||||||||| Sbjct: 548 accgcctccgacgccgccgc 529
>ref|NM_197293.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0091N21.37), mRNA Length = 375 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 91 ccgcctccgccgccgccgcctcca 68
>ref|NM_197291.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0091N21.40), mRNA Length = 426 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 97 ccgcctccgccgccgccgcctcca 74
>ref|XM_470429.1| Oryza sativa (japonica cultivar-group), mRNA Length = 870 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 caaccgcctccgacgccgccgcct 95 |||||||||||| ||||||||||| Sbjct: 595 caaccgcctccgccgccgccgcct 572
>ref|XM_476511.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2361 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 82 cgacgccgccgcctccatcgcaccggac 109 ||||| ||||||||||||| |||||||| Sbjct: 140 cgacggcgccgcctccatcacaccggac 167
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cctccgacgccgccgcctcc 97 |||||||||||||||||||| Sbjct: 10793 cctccgacgccgccgcctcc 10812
>gb|U80840.1| Caenorhabditis elegans cosmid F08D12, complete sequence Length = 33268 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 gccacatctttcacgccatcaacc 76 |||||||||||||| ||||||||| Sbjct: 14297 gccacatctttcactccatcaacc 14274
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 2593713 ccgcctccgacgccgccgcc 2593732
>ref|XM_363126.1| Magnaporthe grisea 70-15 hypothetical protein (MG08710.4) partial cds Length = 2388 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 cgcctccgacgccgccgcct 95 |||||||||||||||||||| Sbjct: 238 cgcctccgacgccgccgcct 219
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 36884 ccgcctccgacgccgccgcc 36865
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 caaccgcctccgacgccgccgcct 95 |||||||||||| ||||||||||| Sbjct: 35587019 caaccgcctccgccgccgccgcct 35586996 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cctccgacgccgccgcctcc 97 |||||||||||||||||||| Sbjct: 24777097 cctccgacgccgccgcctcc 24777116
>ref|XM_545227.2| PREDICTED: Canis familiaris similar to Translation initiation factor eIF-2B epsilon subunit (eIF-2B GDP-GTP exchange factor), transcript variant 1 (LOC488103), mRNA Length = 2510 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgcctcc 97 |||||||||| ||||||||||||| Sbjct: 87 accgcctccgccgccgccgcctcc 64
>ref|XM_852386.1| PREDICTED: Canis familiaris similar to Translation initiation factor eIF-2B epsilon subunit (eIF-2B GDP-GTP exchange factor), transcript variant 2 (LOC488103), mRNA Length = 2352 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgcctcc 97 |||||||||| ||||||||||||| Sbjct: 87 accgcctccgccgccgccgcctcc 64
>gb|AC140347.3| Mus musculus BAC clone RP23-233K3 from chromosome 7, complete sequence Length = 153366 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctgctctacaataaccttgt 279 |||||||||||||||||||| Sbjct: 97254 ctgctctacaataaccttgt 97273
>gb|AC139938.5| Mus musculus chromosome 6, clone RP23-10C7, complete sequence Length = 228748 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tatgttttcaaccgcttgat 384 |||||||||||||||||||| Sbjct: 8577 tatgttttcaaccgcttgat 8558
>emb|CR936370.6| Zebrafish DNA sequence from clone CH211-237H13 in linkage group 8, complete sequence Length = 114220 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 ctctacaataaccttgtaat 282 |||||||||||||||||||| Sbjct: 95961 ctctacaataaccttgtaat 95980
>ref|XM_720026.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04775) partial mRNA Length = 657 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 aacatcttactgaaaataca 498 |||||||||||||||||||| Sbjct: 617 aacatcttactgaaaataca 636
>ref|XM_502076.1| Yarrowia lipolytica CLIB122, YALI0C21131g predicted mRNA Length = 2175 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 acaagctgagtgagcttgat 166 |||||||||||||||||||| Sbjct: 1721 acaagctgagtgagcttgat 1740
>emb|Z11511.1|SCACT1G S.cinnamonensis genes for beta ketoacyl synthase subunits, beta ketoacyl reductase, acyl carrier protein, and bifunctional cyclase/dehydratase Length = 4799 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gcctccgacgccgccgcctccatc 100 ||||||||| |||||||||||||| Sbjct: 3675 gcctccgacaccgccgcctccatc 3698
>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13 Length = 348247 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 173029 ccgcctccgacgccgccgcc 173048
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 64463 ccgcctccgacgccgccgcc 64482
>emb|AJ632203.2| Streptomyces antibioticus oviedomycin biosynthetic gene cluster, strain ATCC 11891 Length = 24720 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 gcctccgacgccgccgcctccatc 100 ||||||||| |||||||||||||| Sbjct: 13420 gcctccgacaccgccgcctccatc 13443
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome Length = 156789 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 123273 ccgcctccgacgccgccgcc 123254 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 2585 ccgcctccgacgccgccgcc 2604
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 28561 ccgcctccgccgccgccgcctcca 28538 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 14289 ccgcctccgccgccgccgcctcca 14266
>gb|AC090630.10| Homo sapiens 12 BAC RP11-630C16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184140 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 agagagagaccctacaagctgagt 157 |||||||||| ||||||||||||| Sbjct: 121484 agagagagactctacaagctgagt 121461
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cctccgacgccgccgcctcc 97 |||||||||||||||||||| Sbjct: 62509 cctccgacgccgccgcctcc 62528
>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete sequence Length = 113606 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgc 93 |||||||||||||||||||| Sbjct: 46535 accgcctccgacgccgccgc 46516 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 16924 ccgcctccgccgccgccgcctcca 16947 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 2652 ccgcctccgccgccgccgcctcca 2675
>gb|AC159471.6| Mus musculus 6 BAC RP24-148O24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159386 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tatgttttcaaccgcttgat 384 |||||||||||||||||||| Sbjct: 58985 tatgttttcaaccgcttgat 59004
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 aaccgcctccgacgccgccg 92 |||||||||||||||||||| Sbjct: 2831357 aaccgcctccgacgccgccg 2831338
>gb|AC154911.4| Mus musculus BAC clone RP23-25I3 from chromosome 7, complete sequence Length = 228885 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 ctgctctacaataaccttgt 279 |||||||||||||||||||| Sbjct: 202667 ctgctctacaataaccttgt 202686
>ref|NM_061961.1| Caenorhabditis elegans F08D12.4 (F08D12.4) mRNA, complete cds Length = 708 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 gccacatctttcacgccatcaacc 76 |||||||||||||| ||||||||| Sbjct: 530 gccacatctttcactccatcaacc 507
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cgcctccgacgccgccgcct 95 |||||||||||||||||||| Sbjct: 16655967 cgcctccgacgccgccgcct 16655986
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 82 cgacgccgccgcctccatcgcaccggac 109 ||||| ||||||||||||| |||||||| Sbjct: 1625284 cgacggcgccgcctccatcacaccggac 1625257
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgcctcc 97 |||||||||| ||||||||||||| Sbjct: 3198662 accgcctccgccgccgccgcctcc 3198639
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ccgcctccgacgccgccgcc 94 |||||||||||||||||||| Sbjct: 27440754 ccgcctccgacgccgccgcc 27440735
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 caaccgcctccgacgccgccgcct 95 |||||||||||| ||||||||||| Sbjct: 35677091 caaccgcctccgccgccgccgcct 35677068 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cctccgacgccgccgcctcc 97 |||||||||||||||||||| Sbjct: 24866881 cctccgacgccgccgcctcc 24866900
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 27725944 ccgcctccgccgccgccgcctcca 27725967
>gb|AC073896.41| Homo sapiens 12 BAC RP11-977G19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174487 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tgggtgattagagagagacc 144 |||||||||||||||||||| Sbjct: 53181 tgggtgattagagagagacc 53162
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 caaccgcctccgacgccgccgcct 95 |||||||||||| ||||||||||| Sbjct: 119982 caaccgcctccgccgccgccgcct 119959
>dbj|AP003374.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1117_G01 Length = 125454 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 17999 ccgcctccgccgccgccgcctcca 18022
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485G01 Length = 167203 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccgcctccgacgccgccgcctcca 98 ||||||||| |||||||||||||| Sbjct: 134510 ccgcctccgccgccgccgcctcca 134533
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgcctcc 97 |||||||||| ||||||||||||| Sbjct: 152847 accgcctccgccgccgccgcctcc 152824
>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0088O14 Length = 179483 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 82 cgacgccgccgcctccatcgcaccggac 109 ||||| ||||||||||||| |||||||| Sbjct: 93939 cgacggcgccgcctccatcacaccggac 93912
>emb|Z71980.1|MDKNOX1 M.domestica mRNA for knotted1-like homeobox protein Length = 1886 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 accgcctccgacgccgccgcctcc 97 |||||||||||| ||||||||||| Sbjct: 588 accgcctccgactccgccgcctcc 611
>dbj|AK103607.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133H15, full insert sequence Length = 1475 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 caaccgcctccgacgccgccgcct 95 |||||||||||| ||||||||||| Sbjct: 707 caaccgcctccgccgccgccgcct 684
>dbj|AK073970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071P17, full insert sequence Length = 2039 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 accgcctccgacgccgccgcctcc 97 |||||||||| ||||||||||||| Sbjct: 296 accgcctccgccgccgccgcctcc 273
>dbj|AK073665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051B07, full insert sequence Length = 882 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cctccgacgccgccgcctcc 97 |||||||||||||||||||| Sbjct: 500 cctccgacgccgccgcctcc 519
>dbj|AK069990.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039H22, full insert sequence Length = 2361 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 82 cgacgccgccgcctccatcgcaccggac 109 ||||| ||||||||||||| |||||||| Sbjct: 140 cgacggcgccgcctccatcacaccggac 167
>dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0483E09 Length = 69300 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 82 cgacgccgccgcctccatcgcaccggac 109 ||||| ||||||||||||| |||||||| Sbjct: 34437 cgacggcgccgcctccatcacaccggac 34410
>gb|AC133959.4| Mus musculus BAC clone RP23-377P18 from 15, complete sequence Length = 143812 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 602 catgctgtagcaaggctata 621 |||||||||||||||||||| Sbjct: 12951 catgctgtagcaaggctata 12970
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 acaagctgagtgagcttgat 166 |||||||||||||||||||| Sbjct: 2826645 acaagctgagtgagcttgat 2826664 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,115,458 Number of Sequences: 3902068 Number of extensions: 5115458 Number of successful extensions: 102773 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101759 Number of HSP's gapped (non-prelim): 1011 length of query: 684 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 661 effective length of database: 17,143,297,704 effective search space: 11331719782344 effective search space used: 11331719782344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
