ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9n09 |
|---|---|
| Clone Library Name | barley_pub |
>XPO1_RAT (Q80U96) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 169 bits (427), Expect = 6e-42 Identities = 82/175 (46%), Positives = 121/175 (69%), Gaps = 3/175 (1%) Frame = +2 Query: 2 DVPRIFEAVFQCTLXMITKNFEDYPEHRLKFFSLLRAIGTHCFKALIQLSSQQLKLVIDS 181 ++P+IF+AVF+CTL MI K+FE+YPEHR FF LL+A+ +HCF A + + Q KLV+DS Sbjct: 818 EIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDS 877 Query: 182 INWAFRHTERNIAETGLSLLLEILKNFQASEFTNQ-FYKTYFLNIEQEIFAVLTDSFHKP 358 I WAF+HT RN+A+TGL +L +L+N E Q FY+TYF +I Q IF+V+TD+ H Sbjct: 878 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTA 937 Query: 359 GFKLHVLVLQHLFCVVD--SLTEPLWDASTVSYPSNALFVRDYTIKLLGASFPNM 517 G +H +L ++F +V+ ++ PL S V SN +F++DY LL ++FP++ Sbjct: 938 GLTMHASILAYMFNLVEEGKISTPLNPGSPV---SNQMFIQDYVANLLKSAFPHL 989
>XPO1_SCHPO (P14068) Exportin-1 (Chromosome region maintenance protein 1)| (Caffeine resistance protein 2) Length = 1078 Score = 167 bits (422), Expect = 2e-41 Identities = 85/178 (47%), Positives = 124/178 (69%), Gaps = 7/178 (3%) Frame = +2 Query: 5 VPRIFEAVFQCTLXMITKNFEDYPEHRLKFFSLLRAIGTHCFKALIQLSSQQLKLVIDSI 184 +P + +AVF CTL MI+K+F +YPEHR FF LLRAI +CF AL+ + + Q KLVI+SI Sbjct: 820 IPLVLDAVFGCTLEMISKDFSEYPEHRAAFFQLLRAINLNCFPALLNIPAPQFKLVINSI 879 Query: 185 NWAFRHTERNIAETGLSLLLEILKNF--QASEFTNQFYKTYFLNIEQEIFAVLTDSFHKP 358 W+F+H R+I ETGL++LLE++ N + +N F++TY++++ Q+I VLTDS HK Sbjct: 880 VWSFKHVSRDIQETGLNILLELINNMASMGPDVSNAFFQTYYISLLQDILYVLTDSDHKS 939 Query: 359 GFKLHVLVLQHLFCVVDS--LTEPLWDASTVSYP---SNALFVRDYTIKLLGASFPNM 517 GFKL L+L LF +V+S +T PL+D S +P +N LF+R Y + LL +FP++ Sbjct: 940 GFKLQSLILARLFYLVESNQITVPLYDPS--QFPQEMNNQLFLRQYIMNLLVTAFPHL 995
>XPO1_MOUSE (Q6P5F9) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 166 bits (421), Expect = 3e-41 Identities = 80/175 (45%), Positives = 121/175 (69%), Gaps = 3/175 (1%) Frame = +2 Query: 2 DVPRIFEAVFQCTLXMITKNFEDYPEHRLKFFSLLRAIGTHCFKALIQLSSQQLKLVIDS 181 ++P+IF+AVF+CTL MI K+FE+YPEHR FF LL+A+ +HCF A + + Q KLV+DS Sbjct: 818 EIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDS 877 Query: 182 INWAFRHTERNIAETGLSLLLEILKNFQASEFTNQ-FYKTYFLNIEQEIFAVLTDSFHKP 358 I WAF+HT RN+A+TGL +L +L+N E Q FY+TYF +I Q IF+V+TD+ H Sbjct: 878 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTA 937 Query: 359 GFKLHVLVLQHLFCVVD--SLTEPLWDASTVSYPSNALFVRDYTIKLLGASFPNM 517 G +H +L ++F +V+ ++ PL + V +N +F++DY LL ++FP++ Sbjct: 938 GLTMHASILAYMFNLVEEGKISTPLNPGNPV---NNQMFIQDYVANLLKSAFPHL 989
>XPO1_HUMAN (O14980) Exportin-1 (Exp1) (Chromosome region maintenance 1 protein| homolog) Length = 1071 Score = 161 bits (407), Expect = 1e-39 Identities = 78/175 (44%), Positives = 120/175 (68%), Gaps = 3/175 (1%) Frame = +2 Query: 2 DVPRIFEAVFQCTLXMITKNFEDYPEHRLKFFSLLRAIGTHCFKALIQLSSQQLKLVIDS 181 ++P+IF+AVF+CTL MI K+FE+YPEHR FF LL+A+ +HCF A + + Q KLV+DS Sbjct: 818 EIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDS 877 Query: 182 INWAFRHTERNIAETGLSLLLEILKNFQASEFTNQ-FYKTYFLNIEQEIFAVLTDSFHKP 358 I WAF+HT RN+A+TGL +L +L+N E Q FY+TYF +I Q IF+V+TD+ H Sbjct: 878 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTA 937 Query: 359 GFKLHVLVLQHLFCVVD--SLTEPLWDASTVSYPSNALFVRDYTIKLLGASFPNM 517 G +H +L ++F +V+ ++ L + V +N +F+++Y LL ++FP++ Sbjct: 938 GLTMHASILAYMFNLVEEGKISTSLNPGNPV---NNQIFLQEYVANLLKSAFPHL 989
>XPO1_DROME (Q9TVM2) Exportin-1 (Chromosome region maintenance 1 protein)| (Protein embargoed) Length = 1063 Score = 161 bits (407), Expect = 1e-39 Identities = 74/174 (42%), Positives = 118/174 (67%), Gaps = 1/174 (0%) Frame = +2 Query: 2 DVPRIFEAVFQCTLXMITKNFEDYPEHRLKFFSLLRAIGTHCFKALIQLSSQQLKLVIDS 181 +VP+IF+AVF+CTL MI KNFED+P+HRL F+ LL+A+ HCFKA + + Q KLV DS Sbjct: 811 EVPKIFDAVFECTLDMINKNFEDFPQHRLSFYELLQAVNAHCFKAFLNIPPAQFKLVFDS 870 Query: 182 INWAFRHTERNIAETGLSLLLEILKNF-QASEFTNQFYKTYFLNIEQEIFAVLTDSFHKP 358 + WAF+HT RN+A+ GL++L ++L+N Q FY+TYF +I +IF+V+TD+ H Sbjct: 871 VVWAFKHTMRNVADMGLNILFKMLQNLDQHPGAAQSFYQTYFTDILMQIFSVVTDTSHTA 930 Query: 359 GFKLHVLVLQHLFCVVDSLTEPLWDASTVSYPSNALFVRDYTIKLLGASFPNMT 520 G H ++L ++F +V++ + + P N +F+++Y LL ++F +++ Sbjct: 931 GLPNHAIILAYMFSLVENRKITV---NLGPIPDNMIFIQEYVASLLKSAFTHLS 981
>XPO1_YEAST (P30822) Exportin-1 (Chromosome region maintenance protein 1)| Length = 1084 Score = 132 bits (332), Expect = 6e-31 Identities = 67/175 (38%), Positives = 104/175 (59%), Gaps = 6/175 (3%) Frame = +2 Query: 14 IFEAVFQCTLXMITKNFEDYPEHRLKFFSLLRAIGTHCFKALIQLSSQQLKLVIDSINWA 193 I ++VF+CTL MI K+F +YPEHR++F+ LL+ I F A ++L KL +D+I WA Sbjct: 833 ILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWA 892 Query: 194 FRHTERNIAETGLSLLLEILKNFQAS---EFTNQFYKTYFLNIEQEIFAVLTDSFHKPGF 364 F+H R++ GL + L+++KN + F N+F+K YF E F VLTDS HK GF Sbjct: 893 FKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGF 952 Query: 365 KLHVLVLQHLFCVV--DSLTEPLW-DASTVSYPSNALFVRDYTIKLLGASFPNMT 520 L+L L +V + ++ PL+ +A SN +++ Y +L +FP++T Sbjct: 953 SKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLT 1007
>MATK_KUNBA (Q9TKC0) Maturase K (Intron maturase)| Length = 503 Score = 30.0 bits (66), Expect = 4.1 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 9/126 (7%) Frame = +2 Query: 131 KALIQLSSQQLKLVI---DSI-NWAFRHTER---NIAETGLSLLLE--ILKNFQASEFTN 283 K LI QQ L+ DSI N F H + I G ++++E I F S Sbjct: 58 KRLITRMYQQNPLIFSAKDSIQNQFFGHNKNLYSQILSEGFAVIVEXPISLRFLFSLERK 117 Query: 284 QFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVDSLTEPLWDASTVSYPSNA 463 + K+Y L IF+ L D F + VL+ H+ + T W S Sbjct: 118 EIAKSYNLRSIHSIFSFLEDKFTHLDYVSDVLIPYHIHLEILXQTLRYWVKDASSLHLLR 177 Query: 464 LFVRDY 481 F+ DY Sbjct: 178 FFLHDY 183
>AHM6_ARATH (Q9SZC9) Putative copper-transporting ATPase PAA1 (EC 3.6.3.4)| Length = 949 Score = 29.6 bits (65), Expect = 5.4 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 5/141 (3%) Frame = +2 Query: 104 LRAIGTHCFKALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFQASEFTN 283 + + G H LI L KLV+D I + + GL L + A+ Sbjct: 282 IHSTGFHVSLCLITLLGPGRKLVLDGIKSLLKGSPNMNTLVGLGALSSFSVSSLAAMIPK 341 Query: 284 QFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLV-LQHLFCVVDSLTEPLWDA----STVS 448 +KT+F I VL + K+ + L V+ S L D STV Sbjct: 342 LGWKTFFEEPVMLIAFVLLGRNLEQRAKIKATSDMTGLLSVLPSKARLLLDGDLQNSTVE 401 Query: 449 YPSNALFVRDYTIKLLGASFP 511 P N+L V D + L G P Sbjct: 402 VPCNSLSVGDLVVILPGDRVP 422
>MATK_KUNPU (Q9TKB6) Maturase K (Intron maturase)| Length = 503 Score = 29.3 bits (64), Expect = 7.1 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 9/126 (7%) Frame = +2 Query: 131 KALIQLSSQQLKLVI---DSI-NWAFRHTER---NIAETGLSLLLEI--LKNFQASEFTN 283 K LI QQ L+ DSI N F H + I G ++++EI F Sbjct: 58 KRLITRMYQQNPLIFSAKDSIQNQFFGHNKNLYSQILSEGFAVIVEIPFSLRFLFLLERK 117 Query: 284 QFYKTYFLNIEQEIFAVLTDSFHKPGFKLHVLVLQHLFCVVDSLTEPLWDASTVSYPSNA 463 + K+Y L IF+ L D F + VL+ H+ + T W S Sbjct: 118 EIAKSYHLRSIHSIFSFLEDKFTHLDYVSDVLIPYHIHLEILVQTLRYWVKDASSLHLLR 177 Query: 464 LFVRDY 481 LF+ DY Sbjct: 178 LFLHDY 183
>ETF2_MYXVL (Q9Q8K4) Early transcription factor 82 kDa subunit (VETF large| subunit) Length = 711 Score = 28.9 bits (63), Expect = 9.2 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%) Frame = +2 Query: 59 NFEDYPEHRLKFFSLLRAIGTHCFKALIQLSSQQLKLVIDS-INWAFRHTERNIAETGLS 235 ++ED + LKF + L + L + I+S N FR N+ TGL Sbjct: 145 SYEDVDVNILKFETRLLEV----------FDDLDLDMTIESKFNNIFR---TNLKFTGLR 191 Query: 236 LLLEILKNFQASEFTNQFYKT--YFLNIEQEIFAVLTD 343 L++ + F S + + YK+ YF+N+ F +LTD Sbjct: 192 KLIKKINEFNGSRYKSLLYKSDEYFINLTGNKF-ILTD 228
>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1277 Score = 28.9 bits (63), Expect = 9.2 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 6/98 (6%) Frame = +2 Query: 104 LRAIGT--HCFKALIQLSSQQLKLVIDSINWAFRH---TERNIAETGLSLLLEILKNFQA 268 +R IG H +++ S+ ++ ++ + + H T+ N+ TG L +L+ Sbjct: 52 IRVIGERYHLSYKIVRTDSRLVRSILTAHGFHEVHPSSTDYNLMWTGSHLKPFLLRTLSE 111 Query: 269 SEFTNQFYKTYFLNIEQEIFAVLTDSFHKPGFKL-HVL 379 ++ N F ++Y L + ++ + H GFK+ H+L Sbjct: 112 AQKVNHFPRSYELTRKDRLYKNIIRMQHTHGFKVFHIL 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,064,444 Number of Sequences: 219361 Number of extensions: 1277746 Number of successful extensions: 2642 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2630 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
