ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags9n08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 3e-52
2gb|AY104750.1| Zea mays PCO077049 mRNA sequence 168 4e-39
3ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative... 147 2e-32
4gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome... 121 9e-25
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 121 9e-25
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 121 9e-25
7ref|NM_186912.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
9dbj|AP004176.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
10dbj|AP003755.5| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
11ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHET... 42 0.68
12ref|XM_633001.1| Dictyostelium discoideum dynactin 50 kDa subuni... 42 0.68
13ref|XM_455007.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E23463g ... 42 0.68
14gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genom... 42 0.68
15gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds 42 0.68
16emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 0.68
17gb|AC164663.5| Mus musculus 10 BAC RP23-44F24 (Roswell Park Canc... 42 0.68
18gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577)... 42 0.68
19gb|AC003070.2| Homo sapiens chromosome 17, clone CTB-39G8, compl... 42 0.68
20gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, comple... 42 0.68
21emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase 42 0.68
22gb|AC141566.4| Mus musculus BAC clone RP23-89G14 from chromosome... 40 2.7
23gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosom... 40 2.7
24ref|XM_949467.1| Theileria annulata strain Ankara hypothetical p... 40 2.7
25emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 i... 40 2.7
26gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Canc... 40 2.7
27emb|BX322615.6| Zebrafish DNA sequence from clone DKEY-81L20 in ... 40 2.7
28gb|AC005912.1| Homo sapiens 12 BAC RPCI11-543P15 (Roswell Park C... 40 2.7
29dbj|AB033754.2| Oryzias latipes gel-a mRNA for gelatinase A, com... 40 2.7 
>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full
            insert sequence
          Length = 3214

 Score =  212 bits (107), Expect = 3e-52
 Identities = 182/208 (87%)
 Strand = Plus / Plus

                                                                        
Query: 3    tgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatta 62
            ||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1222 tgatgggagatgtattccctgagctgaaggacaatgaaaagaagatcaaagatataatta 1281

                                                                        
Query: 63   aagacgaagaggcaagctttgagaacactatancgaaggggtatganagatttaagaaag 122
            |||| ||||||| |||||||||||||||| || | ||||| | ||| | |||||||||||
Sbjct: 1282 aagatgaagaggaaagctttgagaacactctagcaaagggttttgaaaaatttaagaaag 1341

                                                                        
Query: 123  ctgcagatgctgncaaggagaatggcggggcagtacttagtggccaggatgcatttgttc 182
            | ||||||||||  || |||| ||| ||  ||||||||||||| |||||||||||||| |
Sbjct: 1342 cggcagatgctgttaaagagagtggaggaacagtacttagtggacaggatgcatttgtcc 1401

                                        
Query: 183  tgtgggacacctatggttatccaattga 210
            |||||||||||||||| |||||| ||||
Sbjct: 1402 tgtgggacacctatggctatccagttga 1429
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>gb|AY104750.1| Zea mays PCO077049 mRNA sequence
          Length = 3244

 Score =  168 bits (85), Expect = 4e-39
 Identities = 178/210 (84%)
 Strand = Plus / Plus

                                                                        
Query: 3    tgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatta 62
            ||||||||||||| ||||| ||| | |||||||| ||||||||||| |||  ||| ||||
Sbjct: 1222 tgatgggtgatgtatttcccgagttaaaagacaacgaaaagaagatcaaatgtattatta 1281

                                                                        
Query: 63   aagacgaagaggcaagctttgagaacactatancgaaggggtatganagatttaagaaag 122
             ||| ||||| | |||||||||||||||| || | ||||| ||||| | |||||||||||
Sbjct: 1282 gagatgaagaagaaagctttgagaacactctagcaaagggttatgaaaaatttaagaaag 1341

                                                                        
Query: 123  ctgcagatgctgncaaggagaatggcggggcagtacttagtggccaggatgcatttgttc 182
            ||||||| ||||  ||||| ||||| ||  |  |||||||||| |||||||||||| |||
Sbjct: 1342 ctgcagacgctgttaaggataatggtggaactatacttagtggacaggatgcatttattc 1401

                                          
Query: 183  tgtgggacacctatggttatccaattgatt 212
            | |||||||| |||||||||||||||||||
Sbjct: 1402 tttgggacacttatggttatccaattgatt 1431
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>ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala
           synthetase (OSJNBb0022I16.6), mRNA
          Length = 2085

 Score =  147 bits (74), Expect = 2e-32
 Identities = 117/132 (88%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatta 62
           ||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 314 tgatgggagatgtattccctgagctgaaggacaatgaaaagaagatcaaagatataatta 373

                                                                       
Query: 63  aagacgaagaggcaagctttgagaacactatancgaaggggtatganagatttaagaaag 122
           |||| ||||||| |||||||||||||||| || | ||||| | ||| | |||||||||||
Sbjct: 374 aagatgaagaggaaagctttgagaacactctagcaaagggttttgaaaaatttaagaaag 433

                       
Query: 123 ctgcagatgctg 134
           | ||||||||||
Sbjct: 434 cggcagatgctg 445



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 170 gatgcatttgttctgtgggacacctatggttatccaattga 210
           ||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 466 gatgcatttgtcctgtgggacacctatggctatccagttga 506
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>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0022I16, complete sequence
          Length = 127068

 Score =  121 bits (61), Expect = 9e-25
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                         
Query: 3     tgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatta 62
             ||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 51093 tgatgggagatgtattccctgagctgaaggacaatgaaaagaagatcaaagatataatta 51152

                                          
Query: 63    aagacgaagaggcaagctttgagaacact 91
             |||| ||||||| ||||||||||||||||
Sbjct: 51153 aagatgaagaggaaagctttgagaacact 51181



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 167   caggatgcatttgttctgtgggacacctatggttatccaattga 210
             |||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 52063 caggatgcatttgtcctgtgggacacctatggctatccagttga 52106



 Score = 48.1 bits (24), Expect = 0.011
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 112   atttaagaaagctgcagatgctgncaaggagaatggcggggcagtacttagtggccagg 170
             |||||||||||| ||||||||||  || |||| ||| ||  ||||||||||||| ||||
Sbjct: 51667 atttaagaaagcggcagatgctgttaaagagagtggaggaacagtacttagtggacagg 51725
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  121 bits (61), Expect = 9e-25
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                           
Query: 3       tgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatta 62
               ||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 5287895 tgatgggagatgtattccctgagctgaaggacaatgaaaagaagatcaaagatataatta 5287954

                                            
Query: 63      aagacgaagaggcaagctttgagaacact 91
               |||| ||||||| ||||||||||||||||
Sbjct: 5287955 aagatgaagaggaaagctttgagaacact 5287983



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                           
Query: 167     caggatgcatttgttctgtgggacacctatggttatccaattga 210
               |||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 5288865 caggatgcatttgtcctgtgggacacctatggctatccagttga 5288908



 Score = 48.1 bits (24), Expect = 0.011
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 112     atttaagaaagctgcagatgctgncaaggagaatggcggggcagtacttagtggccagg 170
               |||||||||||| ||||||||||  || |||| ||| ||  ||||||||||||| ||||
Sbjct: 5288469 atttaagaaagcggcagatgctgttaaagagagtggaggaacagtacttagtggacagg 5288527
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  121 bits (61), Expect = 9e-25
 Identities = 82/89 (92%)
 Strand = Plus / Plus

                                                                           
Query: 3       tgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatta 62
               ||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 5288682 tgatgggagatgtattccctgagctgaaggacaatgaaaagaagatcaaagatataatta 5288741

                                            
Query: 63      aagacgaagaggcaagctttgagaacact 91
               |||| ||||||| ||||||||||||||||
Sbjct: 5288742 aagatgaagaggaaagctttgagaacact 5288770



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                           
Query: 167     caggatgcatttgttctgtgggacacctatggttatccaattga 210
               |||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 5289652 caggatgcatttgtcctgtgggacacctatggctatccagttga 5289695



 Score = 48.1 bits (24), Expect = 0.011
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 112     atttaagaaagctgcagatgctgncaaggagaatggcggggcagtacttagtggccagg 170
               |||||||||||| ||||||||||  || |||| ||| ||  ||||||||||||| ||||
Sbjct: 5289256 atttaagaaagcggcagatgctgttaaagagagtggaggaacagtacttagtggacagg 5289314
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>ref|NM_186912.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4203

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                         
Query: 17   tttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
            |||||||||||   | |||||||||||||||| ||||||||||||
Sbjct: 1153 tttcctgagcttttacacaatgaaaagaagataaaagatataatt 1197
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 17      tttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
               |||||||||||   | |||||||||||||||| ||||||||||||
Sbjct: 8972076 tttcctgagcttttacacaatgaaaagaagataaaagatataatt 8972032
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>dbj|AP004176.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1057_E05
          Length = 103229

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 33    acaatgaaaagaagattaaagatataatt 61
             |||||||||||||||| ||||||||||||
Sbjct: 98217 acaatgaaaagaagataaaagatataatt 98189
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>dbj|AP003755.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1354_H07
          Length = 157974

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 33    acaatgaaaagaagattaaagatataatt 61
             |||||||||||||||| ||||||||||||
Sbjct: 23503 acaatgaaaagaagataaaagatataatt 23475
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>ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHETASE); ATP binding /
            alanine-tRNA ligase/ nucleic acid binding AT1G50200
            (ALATS) mRNA, complete cds
          Length = 3397

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                        
Query: 2    gtgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
            |||||||| ||||| ||| | ||| |||| ||  |||| || ||||| | ||||||||||
Sbjct: 1395 gtgatgggcgatgtctttacagagttgaaggaacatgagaaaaagatcacagatataatt 1454

                                 
Query: 62   aaagacgaagaggcaagcttt 82
            ||||| || || |||||||||
Sbjct: 1455 aaagaagaggaagcaagcttt 1475
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>ref|XM_633001.1| Dictyostelium discoideum dynactin 50 kDa subunit (DDB0220488),
            partial mRNA
          Length = 1293

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 34   caatgaaaagaagattaaagatata 58
            |||||||||||||||||| ||||||
Sbjct: 978  caatgaaaagaagattaatgatata 1002
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>ref|XM_455007.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E23463g predicted mRNA
          Length = 2349

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 30   aagacaatgaaaagaagattaaaga 54
            ||||||| |||||||||||||||||
Sbjct: 2191 aagacaaagaaaagaagattaaaga 2215
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>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete
             sequence
          Length = 100975

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 2     gtgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
             |||||||| ||||| ||| | ||| |||| ||  |||| || ||||| | ||||||||||
Sbjct: 81696 gtgatgggcgatgtctttacagagttgaaggaacatgagaaaaagatcacagatataatt 81755

                                  
Query: 62    aaagacgaagaggcaagcttt 82
             ||||| || || |||||||||
Sbjct: 81756 aaagaagaggaagcaagcttt 81776
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>gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds
          Length = 2868

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                        
Query: 2    gtgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
            |||||||| ||||| ||| | ||| |||| ||  |||| || ||||| | ||||||||||
Sbjct: 1081 gtgatgggcgatgtctttacagagttgaaggaacatgagaaaaagatcacagatataatt 1140

                                 
Query: 62   aaagacgaagaggcaagcttt 82
            ||||| || || |||||||||
Sbjct: 1141 aaagaagaggaagcaagcttt 1161
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 30      aagacaatgaaaagaagattaaaga 54
               ||||||| |||||||||||||||||
Sbjct: 2079563 aagacaaagaaaagaagattaaaga 2079539
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>gb|AC164663.5| Mus musculus 10 BAC RP23-44F24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 192449

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    aaagaagattaaagatataat 60
             |||||||||||||||||||||
Sbjct: 77800 aaagaagattaaagatataat 77780
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>gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577) At1g50200 mRNA,
            complete sequence
          Length = 3295

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                        
Query: 2    gtgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
            |||||||| ||||| ||| | ||| |||| ||  |||| || ||||| | ||||||||||
Sbjct: 1235 gtgatgggcgatgtctttacagagttgaaggaacatgagaaaaagatcacagatataatt 1294

                                 
Query: 62   aaagacgaagaggcaagcttt 82
            ||||| || || |||||||||
Sbjct: 1295 aaagaagaggaagcaagcttt 1315
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>gb|AC003070.2| Homo sapiens chromosome 17, clone CTB-39G8, complete sequence
          Length = 107217

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 159   ttagtggccaggatgcatttgttctgtgg 187
             |||||||||||||| | ||||||||||||
Sbjct: 61417 ttagtggccaggattcctttgttctgtgg 61445
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>gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 3172

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                        
Query: 2    gtgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
            |||||||| ||||| ||| | ||| |||| ||  |||| || ||||| | ||||||||||
Sbjct: 1220 gtgatgggcgatgtctttacagagttgaaggaacatgagaaaaagatcacagatataatt 1279

                                 
Query: 62   aaagacgaagaggcaagcttt 82
            ||||| || || |||||||||
Sbjct: 1280 aaagaagaggaagcaagcttt 1300
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>emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase
          Length = 3357

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                        
Query: 2    gtgatgggtgatgtgtttcctgagctgaaagacaatgaaaagaagattaaagatataatt 61
            |||||||| ||||| ||| | ||| |||| ||  |||| || ||||| | ||||||||||
Sbjct: 1395 gtgatgggcgatgtctttacagagttgaaggaacatgagaaaaagatcacagatataatt 1454

                                 
Query: 62   aaagacgaagaggcaagcttt 82
            ||||| || || |||||||||
Sbjct: 1455 aaagaagaggaagcaagcttt 1475
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>gb|AC141566.4| Mus musculus BAC clone RP23-89G14 from chromosome 7, complete sequence
          Length = 236600

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    tggccaggatgcatttgttc 182
              ||||||||||||||||||||
Sbjct: 176577 tggccaggatgcatttgttc 176558
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>gb|AC126442.4| Mus musculus BAC clone RP23-453M12 from chromosome 7, complete sequence
          Length = 204287

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    tggccaggatgcatttgttc 182
              ||||||||||||||||||||
Sbjct: 130011 tggccaggatgcatttgttc 130030
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>ref|XM_949467.1| Theileria annulata strain Ankara hypothetical protein (TA19145)
            partial mRNA
          Length = 2748

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 29   aaagacaatgaaaagaagattaaa 52
            ||||||||||||||||| ||||||
Sbjct: 2356 aaagacaatgaaaagaatattaaa 2379
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>emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 in linkage group 13,
              complete sequence
          Length = 171465

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     atgaaaagaagattaaagat 55
              ||||||||||||||||||||
Sbjct: 147252 atgaaaagaagattaaagat 147271
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>gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 132745

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    aaaagaagattaaagatata 58
             ||||||||||||||||||||
Sbjct: 21210 aaaagaagattaaagatata 21229
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>emb|BX322615.6| Zebrafish DNA sequence from clone DKEY-81L20 in linkage group 17,
             complete sequence
          Length = 120315

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gatgggtgatgtgtttcctg 23
             ||||||||||||||||||||
Sbjct: 96029 gatgggtgatgtgtttcctg 96010
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>gb|AC005912.1| Homo sapiens 12 BAC RPCI11-543P15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165516

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 123   ctgcagatgctgncaaggagaat 145
             |||||||||||| ||||||||||
Sbjct: 97718 ctgcagatgctgccaaggagaat 97740
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>dbj|AB033754.2| Oryzias latipes gel-a mRNA for gelatinase A, complete cds
          Length = 3019

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 23  gagctgaaagacaatgaaaagaag 46
           |||||||||||| |||||||||||
Sbjct: 177 gagctgaaagacgatgaaaagaag 154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,252,636
Number of Sequences: 3902068
Number of extensions: 2252636
Number of successful extensions: 155303
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155128
Number of HSP's gapped (non-prelim): 173
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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