ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags9n07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476072.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 571 bits (288), Expect = e-159 Identities = 411/452 (90%) Strand = Plus / Plus Query: 166 aagaccgggactaccatcgtcggtctcgtgtttacggatggagttgttcttggggcagac 225 |||||||||||||||||||||||| | || ||| |||||| |||||||||||||||||| Sbjct: 106 aagaccgggactaccatcgtcggtttggtctttcaggatggtgttgttcttggggcagac 165 Query: 226 acaagggcgaccgagggtcctatagttgctgataagaactgcgagaaaattcattttatg 285 || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 166 acgagggccaccgagggtcctatagttgctgataagaactgcgagaaaattcattatatg 225 Query: 286 gcaccaaacatatattgctgtggtgctggaactgctgctgacacagaggctgtgacagat 345 || |||||||||||||||||||| || |||||||| |||||||| |||||||| |||||| Sbjct: 226 gcgccaaacatatattgctgtggagcaggaactgccgctgacactgaggctgtaacagat 285 Query: 346 atggtcagctcccagctacaacttcaccgttatgctactagccgtgagtcaagagttgta 405 |||||||| |||||||| ||||||||||||||||| ||| | |||||||| ||||||||| Sbjct: 286 atggtcagttcccagcttcaacttcaccgttatgcaactggtcgtgagtccagagttgta 345 Query: 406 accgctcttacactactgaagacccacctttttaactaccaaggtcatgtcagtgctgct 465 ||| |||||||| |||||||| | |||||||||| |||||||||||||||||||||||| Sbjct: 346 acctctcttacattactgaagtcgcacctttttagctaccaaggtcatgtcagtgctgcc 405 Query: 466 cttgttcttggcggagtagatgtcactggaccacatctacacactgtttatccgcatggc 525 ||||||||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||| Sbjct: 406 cttgttcttggtggagtagatgttactgggccacacctgcacactgtttatccacatggc 465 Query: 526 tccaccgatactcttccttttgccacgatgggttctggatcccttgctgcgatgtcagtg 585 ||||| || ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 466 tccacggacactcttccttttgccacaatgggttctggatcccttgcggcaatgtcagtg 525 Query: 586 tttgagttgaagtacagagaaggcctcacaag 617 ||||| | |||||||| ||||||||||||||| Sbjct: 526 tttgaatcgaagtacaaagaaggcctcacaag 557
>dbj|AK103126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119N09, full insert sequence Length = 1195 Score = 571 bits (288), Expect = e-159 Identities = 411/452 (90%) Strand = Plus / Plus Query: 166 aagaccgggactaccatcgtcggtctcgtgtttacggatggagttgttcttggggcagac 225 |||||||||||||||||||||||| | || ||| |||||| |||||||||||||||||| Sbjct: 323 aagaccgggactaccatcgtcggtttggtctttcaggatggtgttgttcttggggcagac 382 Query: 226 acaagggcgaccgagggtcctatagttgctgataagaactgcgagaaaattcattttatg 285 || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 383 acgagggccaccgagggtcctatagttgctgataagaactgcgagaaaattcattatatg 442 Query: 286 gcaccaaacatatattgctgtggtgctggaactgctgctgacacagaggctgtgacagat 345 || |||||||||||||||||||| || |||||||| |||||||| |||||||| |||||| Sbjct: 443 gcgccaaacatatattgctgtggagcaggaactgccgctgacactgaggctgtaacagat 502 Query: 346 atggtcagctcccagctacaacttcaccgttatgctactagccgtgagtcaagagttgta 405 |||||||| |||||||| ||||||||||||||||| ||| | |||||||| ||||||||| Sbjct: 503 atggtcagttcccagcttcaacttcaccgttatgcaactggtcgtgagtccagagttgta 562 Query: 406 accgctcttacactactgaagacccacctttttaactaccaaggtcatgtcagtgctgct 465 ||| |||||||| |||||||| | |||||||||| |||||||||||||||||||||||| Sbjct: 563 acctctcttacattactgaagtcgcacctttttagctaccaaggtcatgtcagtgctgcc 622 Query: 466 cttgttcttggcggagtagatgtcactggaccacatctacacactgtttatccgcatggc 525 ||||||||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||| Sbjct: 623 cttgttcttggtggagtagatgttactgggccacacctgcacactgtttatccacatggc 682 Query: 526 tccaccgatactcttccttttgccacgatgggttctggatcccttgctgcgatgtcagtg 585 ||||| || ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 683 tccacggacactcttccttttgccacaatgggttctggatcccttgcggcaatgtcagtg 742 Query: 586 tttgagttgaagtacagagaaggcctcacaag 617 ||||| | |||||||| ||||||||||||||| Sbjct: 743 tttgaatcgaagtacaaagaaggcctcacaag 774
>dbj|AB026564.1| Oryza sativa (japonica cultivar-group) OsPBB1 mRNA for beta 2 subunit of 20S proteasome, complete cds Length = 1122 Score = 571 bits (288), Expect = e-159 Identities = 411/452 (90%) Strand = Plus / Plus Query: 166 aagaccgggactaccatcgtcggtctcgtgtttacggatggagttgttcttggggcagac 225 |||||||||||||||||||||||| | || ||| |||||| |||||||||||||||||| Sbjct: 216 aagaccgggactaccatcgtcggtttggtctttcaggatggtgttgttcttggggcagac 275 Query: 226 acaagggcgaccgagggtcctatagttgctgataagaactgcgagaaaattcattttatg 285 || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 276 acgagggccaccgagggtcctatagttgctgataagaactgcgagaaaattcattatatg 335 Query: 286 gcaccaaacatatattgctgtggtgctggaactgctgctgacacagaggctgtgacagat 345 || |||||||||||||||||||| || |||||||| |||||||| |||||||| |||||| Sbjct: 336 gcgccaaacatatattgctgtggagcaggaactgccgctgacactgaggctgtaacagat 395 Query: 346 atggtcagctcccagctacaacttcaccgttatgctactagccgtgagtcaagagttgta 405 |||||||| |||||||| ||||||||||||||||| ||| | |||||||| ||||||||| Sbjct: 396 atggtcagttcccagcttcaacttcaccgttatgcaactggtcgtgagtccagagttgta 455 Query: 406 accgctcttacactactgaagacccacctttttaactaccaaggtcatgtcagtgctgct 465 ||| |||||||| |||||||| | |||||||||| |||||||||||||||||||||||| Sbjct: 456 acctctcttacattactgaagtcgcacctttttagctaccaaggtcatgtcagtgctgcc 515 Query: 466 cttgttcttggcggagtagatgtcactggaccacatctacacactgtttatccgcatggc 525 ||||||||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||| Sbjct: 516 cttgttcttggtggagtagatgttactgggccacacctgcacactgtttatccacatggc 575 Query: 526 tccaccgatactcttccttttgccacgatgggttctggatcccttgctgcgatgtcagtg 585 ||||| || ||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct: 576 tccacggacactcttccttttgccacaatgggttctggatcccttgcggcaatgtcagtg 635 Query: 586 tttgagttgaagtacagagaaggcctcacaag 617 ||||| | |||||||| ||||||||||||||| Sbjct: 636 tttgaatcgaagtacaaagaaggcctcacaag 667
>gb|BT017621.1| Zea mays clone EL01N0435E12.c mRNA sequence Length = 1144 Score = 486 bits (245), Expect = e-134 Identities = 467/540 (86%), Gaps = 1/540 (0%) Strand = Plus / Plus Query: 72 atggaactccctaccaagggcggcttcagcttcgacctgtgccgcaggaacgccatgctg 131 ||||| ||||| |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct: 112 atggatctcccggccaagggcgggttcagcttcgacctgtgccgccggaacaacatgctg 171 Query: 132 gagaagacgggccacaagnatgcccgggttcaggaagaccgggactaccatcgtcggtct 191 ||||||| || | |||| | || || ||||||||||||||||| ||||||||||| || Sbjct: 172 gagaagaacgggctcaagg-tcccgggattcaggaagaccgggacaaccatcgtcggcct 230 Query: 192 cgtgtttacggatggagttgttcttggggcagacacaagggcgaccgagggtcctatagt 251 ||| ||| |||||| |||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 231 cgtctttcaggatggggttgttcttggggcagacacaagggcaactgagggccccatagt 290 Query: 252 tgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggtgc 311 ||||||||||||||| |||||||| || ||||||||||| || ||||| |||||||| || Sbjct: 291 tgctgataagaactgtgagaaaatccactttatggcaccgaatatatactgctgtggagc 350 Query: 312 tggaactgctgctgacacagaggctgtgacagatatggtcagctcccagctacaacttca 371 ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 351 aggaactgctgcggacacggaggccgttacagatatggtgagctcccagctacagcttca 410 Query: 372 ccgttatgctactagccgtgagtcaagagttgtaaccgctcttacactactgaagaccca 431 ||||||||| || |||| || |||||||||||||| |||||||||||||||||| | || Sbjct: 411 ccgttatgcaacgggccgcgaatcaagagttgtaactgctcttacactactgaagtcaca 470 Query: 432 cctttttaactaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcac 491 ||| || || || ||||| |||||||||||||| ||||||||||| ||||| ||| || Sbjct: 471 cctcttcaagtatcaaggccatgtcagtgctgcccttgttcttggtggagtggattgtac 530 Query: 492 tggaccacatctacacactgtttatccgcatggctccaccgatactcttccttttgccac 551 ||| |||||| |||||||||||||||| || || ||||| |||||||||||||||||||| Sbjct: 531 tgggccacatttacacactgtttatccacacgggtccactgatactcttccttttgccac 590 Query: 552 gatgggttctggatcccttgctgcgatgtcagtgtttgagttgaagtacagagaaggcct 611 ||||| ||||| || |||||||| |||||||||||||| | |||||||| ||||||||| Sbjct: 591 catgggctctggttctcttgctgcaatgtcagtgtttgaatcgaagtacaaagaaggcct 650
>gb|AY105052.1| Zea mays PCO138078 mRNA sequence Length = 1368 Score = 478 bits (241), Expect = e-131 Identities = 466/540 (86%), Gaps = 1/540 (0%) Strand = Plus / Plus Query: 72 atggaactccctaccaagggcggcttcagcttcgacctgtgccgcaggaacgccatgctg 131 ||||| ||||| |||||||||| ||||||||||||||||| ||| ||||| ||||||| Sbjct: 206 atggatctcccggccaagggcgggttcagcttcgacctgtgtcgccggaacaacatgctg 265 Query: 132 gagaagacgggccacaagnatgcccgggttcaggaagaccgggactaccatcgtcggtct 191 ||||||| || | |||| | || || ||||||||||||||||| ||||||||||| || Sbjct: 266 gagaagaacggactcaagg-tcccgggattcaggaagaccgggacaaccatcgtcggcct 324 Query: 192 cgtgtttacggatggagttgttcttggggcagacacaagggcgaccgagggtcctatagt 251 ||| ||| |||||| |||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 325 cgtctttcaggatggggttgttcttggggcagacacaagggcaactgagggccccatagt 384 Query: 252 tgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggtgc 311 ||||||||||||||| |||||||| || ||||||||||| || ||||| |||||||| || Sbjct: 385 tgctgataagaactgtgagaaaatccactttatggcaccgaatatatactgctgtggagc 444 Query: 312 tggaactgctgctgacacagaggctgtgacagatatggtcagctcccagctacaacttca 371 ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 445 aggaactgctgcggacacggaggccgttacagatatggtgagctcccagctacagcttca 504 Query: 372 ccgttatgctactagccgtgagtcaagagttgtaaccgctcttacactactgaagaccca 431 ||||||||| || |||| || |||||||||||||| |||||||||||||||||| | || Sbjct: 505 ccgttatgcaacgggccgcgaatcaagagttgtaactgctcttacactactgaagtcaca 564 Query: 432 cctttttaactaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcac 491 ||| || || || ||||| |||||||||||||| ||||||||||| ||||| ||| || Sbjct: 565 cctcttcaagtatcaaggccatgtcagtgctgcccttgttcttggtggagtggattgtac 624 Query: 492 tggaccacatctacacactgtttatccgcatggctccaccgatactcttccttttgccac 551 ||| |||||| |||||||||||||||| || || ||||| |||||||||||||||||||| Sbjct: 625 tgggccacatttacacactgtttatccacacgggtccactgatactcttccttttgccac 684 Query: 552 gatgggttctggatcccttgctgcgatgtcagtgtttgagttgaagtacagagaaggcct 611 ||||| ||||| || |||||||| |||||||||||||| | |||||||| ||||||||| Sbjct: 685 catgggctctggttctcttgctgcaatgtcagtgtttgaatcgaagtacaaagaaggcct 744
>dbj|AK058440.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F11, full insert sequence Length = 750 Score = 414 bits (209), Expect = e-112 Identities = 308/341 (90%) Strand = Plus / Plus Query: 277 cattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacagaggct 336 |||| |||||| |||||||||||||||||||| || |||||||| |||||||| |||||| Sbjct: 1 cattatatggcgccaaacatatattgctgtggagcaggaactgccgctgacactgaggct 60 Query: 337 gtgacagatatggtcagctcccagctacaacttcaccgttatgctactagccgtgagtca 396 || |||||||||||||| |||||||| ||||||||||||||||| ||| | |||||||| Sbjct: 61 gtaacagatatggtcagttcccagcttcaacttcaccgttatgcaactggtcgtgagtcc 120 Query: 397 agagttgtaaccgctcttacactactgaagacccacctttttaactaccaaggtcatgtc 456 |||||||||||| |||||||| |||||||| | |||||||||| |||||||||||||||| Sbjct: 121 agagttgtaacctctcttacattactgaagtcgcacctttttagctaccaaggtcatgtc 180 Query: 457 agtgctgctcttgttcttggcggagtagatgtcactggaccacatctacacactgtttat 516 |||||||| ||||||||||| ||||||||||| ||||| ||||| || |||||||||||| Sbjct: 181 agtgctgcccttgttcttggtggagtagatgttactgggccacacctgcacactgtttat 240 Query: 517 ccgcatggctccaccgatactcttccttttgccacgatgggttctggatcccttgctgcg 576 || ||||||||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 241 ccacatggctccacggacactcttccttttgccacaatgggttctggatcccttgcggca 300 Query: 577 atgtcagtgtttgagttgaagtacagagaaggcctcacaag 617 |||||||||||||| | |||||||| ||||||||||||||| Sbjct: 301 atgtcagtgtttgaatcgaagtacaaagaaggcctcacaag 341
>gb|AY110243.1| Zea mays CL2786_1 mRNA sequence Length = 1029 Score = 248 bits (125), Expect = 2e-62 Identities = 255/297 (85%), Gaps = 1/297 (0%) Strand = Plus / Minus Query: 318 tgctgctgacacagaggctgtgacagatatggtcagctcccagctacaacttcaccgtta 377 |||||||||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| Sbjct: 975 tgctgctgacactgaggctgt-acagacatggtcagctcgcagctacagctgcaccgtta 917 Query: 378 tgctactagccgtgagtcaagagttgtaaccgctcttacactactgaagacccacctttt 437 || || | || || || ||||| ||||| ||||||||||| |||||| | || || || Sbjct: 916 cgcaacgggtcgcgaatctagagtcgtaactgctcttacactgctgaagtcacatctctt 857 Query: 438 taactaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggacc 497 || || ||||| |||||||||||||| ||||||||||| ||||| ||| |||||||| Sbjct: 856 taggtatcaaggccatgtcagtgctgcccttgttcttggtggagtggattgtactggacc 797 Query: 498 acatctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatggg 557 ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| Sbjct: 796 gcatcttcacactgtttatccacacggctccactgatactcttccttttgccacgatggg 737 Query: 558 ttctggatcccttgctgcgatgtcagtgtttgagttgaagtacagagaaggcctcac 614 |||||||||||||||||| |||||||||||||| | |||||| | ||| |||||||| Sbjct: 736 ttctggatcccttgctgcaatgtcagtgtttgaatcgaagtataaagagggcctcac 680
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 204 bits (103), Expect = 2e-49 Identities = 133/143 (93%) Strand = Plus / Plus Query: 201 ggatggagttgttcttggggcagacacaagggcgaccgagggtcctatagttgctgataa 260 |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 5278640 ggatggtgttgttcttggggcagacacgagggccaccgagggtcctatagttgctgataa 5278699 Query: 261 gaactgcgagaaaattcattttatggcaccaaacatatattgctgtggtgctggaactgc 320 |||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||| Sbjct: 5278700 gaactgcgagaaaattcattatatggcgccaaacatatattgctgtggagcaggaactgc 5278759 Query: 321 tgctgacacagaggctgtgacag 343 |||||||| |||||||| |||| Sbjct: 5278760 cgctgacactgaggctgtaacag 5278782 Score = 137 bits (69), Expect = 5e-29 Identities = 96/105 (91%) Strand = Plus / Plus Query: 511 gtttatccgcatggctccaccgatactcttccttttgccacgatgggttctggatccctt 570 |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct: 5279284 gtttatccacatggctccacggacactcttccttttgccacaatgggttctggatccctt 5279343 Query: 571 gctgcgatgtcagtgtttgagttgaagtacagagaaggcctcaca 615 || || |||||||||||||| | |||||||| ||||||||||||| Sbjct: 5279344 gcggcaatgtcagtgtttgaatcgaagtacaaagaaggcctcaca 5279388 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 342 agatatggtcagctcccagctacaacttcaccgttatgctactagccgtgagtcaagagt 401 |||||||||||| |||||||| ||||||||||||||||| ||| | |||||||| ||||| Sbjct: 5278921 agatatggtcagttcccagcttcaacttcaccgttatgcaactggtcgtgagtccagagt 5278980 Query: 402 tgtaaccgctcttacactactgaagacccaccttttta 439 ||||||| |||||||| |||||||| | |||||||||| Sbjct: 5278981 tgtaacctctcttacattactgaagtcgcaccttttta 5279018 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Plus Query: 435 ttttaactaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactgg 494 ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct: 5279124 ttttagctaccaaggtcatgtcagtgctgcccttgttcttggtggagtagatgttactgg 5279183 Query: 495 accacatctacacactgt 512 ||||| || |||||||| Sbjct: 5279184 gccacacctgcacactgt 5279201 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 166 aagaccgggactaccatcgtcggt 189 |||||||||||||||||||||||| Sbjct: 5278118 aagaccgggactaccatcgtcggt 5278141
>gb|AC093954.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1097_A12, complete sequence Length = 88725 Score = 204 bits (103), Expect = 2e-49 Identities = 133/143 (93%) Strand = Plus / Plus Query: 201 ggatggagttgttcttggggcagacacaagggcgaccgagggtcctatagttgctgataa 260 |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 15341 ggatggtgttgttcttggggcagacacgagggccaccgagggtcctatagttgctgataa 15400 Query: 261 gaactgcgagaaaattcattttatggcaccaaacatatattgctgtggtgctggaactgc 320 |||||||||||||||||||| |||||| |||||||||||||||||||| || |||||||| Sbjct: 15401 gaactgcgagaaaattcattatatggcgccaaacatatattgctgtggagcaggaactgc 15460 Query: 321 tgctgacacagaggctgtgacag 343 |||||||| |||||||| |||| Sbjct: 15461 cgctgacactgaggctgtaacag 15483 Score = 137 bits (69), Expect = 5e-29 Identities = 96/105 (91%) Strand = Plus / Plus Query: 511 gtttatccgcatggctccaccgatactcttccttttgccacgatgggttctggatccctt 570 |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct: 15985 gtttatccacatggctccacggacactcttccttttgccacaatgggttctggatccctt 16044 Query: 571 gctgcgatgtcagtgtttgagttgaagtacagagaaggcctcaca 615 || || |||||||||||||| | |||||||| ||||||||||||| Sbjct: 16045 gcggcaatgtcagtgtttgaatcgaagtacaaagaaggcctcaca 16089 Score = 115 bits (58), Expect = 2e-22 Identities = 88/98 (89%) Strand = Plus / Plus Query: 342 agatatggtcagctcccagctacaacttcaccgttatgctactagccgtgagtcaagagt 401 |||||||||||| |||||||| ||||||||||||||||| ||| | |||||||| ||||| Sbjct: 15622 agatatggtcagttcccagcttcaacttcaccgttatgcaactggtcgtgagtccagagt 15681 Query: 402 tgtaaccgctcttacactactgaagacccaccttttta 439 ||||||| |||||||| |||||||| | |||||||||| Sbjct: 15682 tgtaacctctcttacattactgaagtcgcaccttttta 15719 Score = 99.6 bits (50), Expect = 1e-17 Identities = 71/78 (91%) Strand = Plus / Plus Query: 435 ttttaactaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactgg 494 ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct: 15825 ttttagctaccaaggtcatgtcagtgctgcccttgttcttggtggagtagatgttactgg 15884 Query: 495 accacatctacacactgt 512 ||||| || |||||||| Sbjct: 15885 gccacacctgcacactgt 15902 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 166 aagaccgggactaccatcgtcggt 189 |||||||||||||||||||||||| Sbjct: 14819 aagaccgggactaccatcgtcggt 14842
>ref|NM_180310.1| Arabidopsis thaliana PBB1; endopeptidase/ peptidase/ threonine endopeptidase AT3G27430 (PBB1) transcript variant AT3G27430.1 mRNA, complete cds Length = 1228 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 311 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 370 Query: 310 gctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 || |||||||| ||||| || || || || || |||||||||||||| ||||| Sbjct: 371 gcaggaactgcggctgatactgaagcagtcactgatatggtcagctcacagct 423 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 502 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 561 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| || ||| | || || || || || || || |||||||| || ||||| |||||||| Sbjct: 562 tctgcatactatatacccacacggttcaactgacactcttccattcgccacaatgggttc 621 Query: 561 tggatcccttgctgcgatgtcagtgtttgag 591 || || |||||||| ||||| ||||||||| Sbjct: 622 gggttctcttgctgctatgtctgtgtttgag 652
>ref|NM_113658.2| Arabidopsis thaliana PBB1; endopeptidase/ peptidase/ threonine endopeptidase AT3G27430 (PBB1) transcript variant AT3G27430.2 mRNA, complete cds Length = 1230 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 311 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 370 Query: 310 gctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 || |||||||| ||||| || || || || || |||||||||||||| ||||| Sbjct: 371 gcaggaactgcggctgatactgaagcagtcactgatatggtcagctcacagct 423 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 502 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 561 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| || ||| | || || || || || || || |||||||| || ||||| |||||||| Sbjct: 562 tctgcatactatatacccacacggttcaactgacactcttccattcgccacaatgggttc 621 Query: 561 tggatcccttgctgcgatgtcagtgtttgag 591 || || |||||||| ||||| ||||||||| Sbjct: 622 gggttctcttgctgctatgtctgtgtttgag 652
>emb|Y13178.1|ATY13178 Arabidopsis thaliana mRNA for proteasome subunit prcfa Length = 1068 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 213 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 272 Query: 310 gctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 || |||||||| ||||| || || || || || |||||||||||||| ||||| Sbjct: 273 gcaggaactgcggctgatactgaagcagtcactgatatggtcagctcacagct 325 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 404 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 463 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| || ||| | || || || || || || || |||||||| || ||||| |||||||| Sbjct: 464 tctgcatactatatacccacacggttcaactgacactcttccattcgccacaatgggttc 523 Query: 561 tggatcccttgctgcgatgtcagtgtttgag 591 || || |||||||| ||||| ||||||||| Sbjct: 524 gggttctcttgctgctatgtctgtgtttgag 554
>gb|BT006306.1| Arabidopsis thaliana At3g27430 mRNA, complete cds Length = 822 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 193 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 252 Query: 310 gctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 || |||||||| ||||| || || || || || |||||||||||||| ||||| Sbjct: 253 gcaggaactgcggctgatactgaagcagtcactgatatggtcagctcacagct 305 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 384 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 443 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| || ||| | || || || || || || || |||||||| || ||||| |||||||| Sbjct: 444 tctgcatactatatacccacacggttcaactgacactcttccattcgccacaatgggttc 503 Query: 561 tggatcccttgctgcgatgtcagtgtttgag 591 || || |||||||| ||||| ||||||||| Sbjct: 504 gggttctcttgctgctatgtctgtgtttgag 534
>gb|BT003339.1| Arabidopsis thaliana 20S proteasome beta subunit (PBB1) (At3g27430) mRNA, complete cds Length = 1067 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 311 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 370 Query: 310 gctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 || |||||||| ||||| || || || || || |||||||||||||| ||||| Sbjct: 371 gcaggaactgcggctgatactgaagcagtcactgatatggtcagctcacagct 423 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 502 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 561 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| || ||| | || || || || || || || |||||||| || ||||| |||||||| Sbjct: 562 tctgcatactatatacccacacggttcaactgacactcttccattcgccacaatgggttc 621 Query: 561 tggatcccttgctgcgatgtcagtgtttgag 591 || || |||||||| ||||| ||||||||| Sbjct: 622 gggttctcttgctgctatgtctgtgtttgag 652
>gb|AY086464.1| Arabidopsis thaliana clone 25264 mRNA, complete sequence Length = 1120 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 286 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 345 Query: 310 gctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 || |||||||| ||||| || || || || || |||||||||||||| ||||| Sbjct: 346 gcaggaactgcggctgatactgaagcagtcactgatatggtcagctcacagct 398 Score = 77.8 bits (39), Expect = 4e-11 Identities = 123/151 (81%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 477 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 536 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| || ||| | || || || || || || || |||||||| || || || |||||||| Sbjct: 537 tctgcatactatatacccacacggttcaactgacactcttccattcgctacaatgggttc 596 Query: 561 tggatcccttgctgcgatgtcagtgtttgag 591 || || |||||||| ||||| ||||||||| Sbjct: 597 gggttctcttgctgctatgtctgtgtttgag 627
>gb|AF043530.1|AF043530 Arabidopsis thaliana 20S proteasome beta subunit PBB1 (PBB1) mRNA, complete cds Length = 1068 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 213 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 272 Query: 310 gctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 || |||||||| ||||| || || || || || |||||||||||||| ||||| Sbjct: 273 gcaggaactgcggctgatactgaagcagtcactgatatggtcagctcacagct 325 Score = 85.7 bits (43), Expect = 2e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 404 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 463 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| || ||| | || || || || || || || |||||||| || ||||| |||||||| Sbjct: 464 tctgcatactatatacccacacggttcaactgacactcttccattcgccacaatgggttc 523 Query: 561 tggatcccttgctgcgatgtcagtgtttgag 591 || || |||||||| ||||| ||||||||| Sbjct: 524 gggttctcttgctgctatgtctgtgtttgag 554
>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2 Length = 70952 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||||||| Sbjct: 53864 gttgctgataagaactgtgagaagattcactatatggcaccaaacatatattgctgtggt 53923 Query: 310 gctggaactgctgctga 326 || |||||||| ||||| Sbjct: 53924 gcaggaactgcggctga 53940 Score = 63.9 bits (32), Expect = 6e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 |||||||||||||||| |||||||||||| || || ||||| ||| ||||||| ||||| Sbjct: 54263 ctaccaaggtcatgtctctgctgctcttgtactcggtggagttgatatcactggtccaca 54322 Query: 501 tctacacactgt 512 ||| || ||||| Sbjct: 54323 tctgcatactgt 54334
>gb|AC150800.3| Medicago truncatula chromosome 7 BAC clone mth2-77m9, complete sequence Length = 116865 Score = 103 bits (52), Expect = 7e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 268 gagaaaattcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgac 327 ||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||| Sbjct: 108108 gagaaaattcattatatggcaccaaacatatattgctgtggagcaggcactgctgctgat 108049 Query: 328 acagaggctgtgacag 343 ||||||||||| |||| Sbjct: 108048 acagaggctgtaacag 108033 Score = 40.1 bits (20), Expect = 8.4 Identities = 59/72 (81%) Strand = Plus / Minus Query: 442 taccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccacat 501 ||||||||||||||| ||||| | |||||||| || || || |||||||||| ||| Sbjct: 107711 taccaaggtcatgtctcagctgccttagttcttggtggggttgacatcactggaccgcat 107652 Query: 502 ctacacactgtt 513 ||||||||||| Sbjct: 107651 ttacacactgtt 107640
>ref|NM_180777.1| Arabidopsis thaliana PBB2; endopeptidase/ peptidase/ threonine endopeptidase AT5G40580 (PBB2) transcript variant AT5G40580.1 mRNA, complete cds Length = 1176 Score = 97.6 bits (49), Expect = 4e-17 Identities = 124/149 (83%) Strand = Plus / Plus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| || |||||||||||||| ||||| Sbjct: 306 cttggggctgatacacgggcaactgaagggcctattgtggctgataagaactgtgagaag 365 Query: 274 attcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacagag 333 ||||| | |||||||||||||| || || |||||||| ||||| ||||||||||| || Sbjct: 366 attcactacatggcaccaaacatttactgttgtggtgcaggaaccgctgctgacactgaa 425 Query: 334 gctgtgacagatatggtcagctcccagct 362 || || || |||||||||||||| ||||| Sbjct: 426 gcagtaactgatatggtcagctcacagct 454 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 ||||||||| |||||| ||||||||||| ||||| ||||| ||| | || || || || Sbjct: 533 ctaccaaggccatgtctcagctgctcttgtgcttggtggagttgatattaccgggcctca 592 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| ||||| | || || || || || || || ||||| || ||||| || |||||||| Sbjct: 593 tcttcacacgatatacccacacggttctactgacactctaccatttgctacaatgggttc 652 Query: 561 tggatcccttgctgcgatgtcagtgtttga 590 ||| ||||||||||| |||||||||||||| Sbjct: 653 tggttcccttgctgccatgtcagtgtttga 682
>ref|NM_123422.2| Arabidopsis thaliana PBB2; endopeptidase/ peptidase/ threonine endopeptidase AT5G40580 (PBB2) transcript variant AT5G40580.2 mRNA, complete cds Length = 1106 Score = 97.6 bits (49), Expect = 4e-17 Identities = 124/149 (83%) Strand = Plus / Plus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| || |||||||||||||| ||||| Sbjct: 236 cttggggctgatacacgggcaactgaagggcctattgtggctgataagaactgtgagaag 295 Query: 274 attcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacagag 333 ||||| | |||||||||||||| || || |||||||| ||||| ||||||||||| || Sbjct: 296 attcactacatggcaccaaacatttactgttgtggtgcaggaaccgctgctgacactgaa 355 Query: 334 gctgtgacagatatggtcagctcccagct 362 || || || |||||||||||||| ||||| Sbjct: 356 gcagtaactgatatggtcagctcacagct 384 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 ||||||||| |||||| ||||||||||| ||||| ||||| ||| | || || || || Sbjct: 463 ctaccaaggccatgtctcagctgctcttgtgcttggtggagttgatattaccgggcctca 522 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| ||||| | || || || || || || || ||||| || ||||| || |||||||| Sbjct: 523 tcttcacacgatatacccacacggttctactgacactctaccatttgctacaatgggttc 582 Query: 561 tggatcccttgctgcgatgtcagtgtttga 590 ||| ||||||||||| |||||||||||||| Sbjct: 583 tggttcccttgctgccatgtcagtgtttga 612
>gb|AY114591.1| Arabidopsis thaliana 20S proteasome beta subunit PBB2 (At5g40580) mRNA, complete cds Length = 957 Score = 97.6 bits (49), Expect = 4e-17 Identities = 124/149 (83%) Strand = Plus / Plus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| || |||||||||||||| ||||| Sbjct: 157 cttggggctgatacacgggcaactgaagggcctattgtggctgataagaactgtgagaag 216 Query: 274 attcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacagag 333 ||||| | |||||||||||||| || || |||||||| ||||| ||||||||||| || Sbjct: 217 attcactacatggcaccaaacatttactgttgtggtgcaggaaccgctgctgacactgaa 276 Query: 334 gctgtgacagatatggtcagctcccagct 362 || || || |||||||||||||| ||||| Sbjct: 277 gcagtaactgatatggtcagctcacagct 305 Score = 60.0 bits (30), Expect = 9e-06 Identities = 120/150 (80%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 ||||||||| |||||| ||||||||||| ||||| ||||| ||| | || || || || Sbjct: 384 ctaccaaggccatgtctcagctgctcttgtgcttggtggagttgatattaccgggcctca 443 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| ||||| | || || || || || || || ||||| || ||||| || |||||||| Sbjct: 444 tcttcacacgatatacccacacggttctactgacactctaccatttgctacaatgggttc 503 Query: 561 tggatcccttgctgcgatgtcagtgtttga 590 ||| |||||||||| |||||||||||||| Sbjct: 504 tggttcccttgctgtcatgtcagtgtttga 533
>gb|AY093011.1| Arabidopsis thaliana 20S proteasome beta subunit PBB2 (At5g40580) mRNA, complete cds Length = 1105 Score = 97.6 bits (49), Expect = 4e-17 Identities = 124/149 (83%) Strand = Plus / Plus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| || |||||||||||||| ||||| Sbjct: 236 cttggggctgatacacgggcaactgaagggcctattgtggctgataagaactgtgagaag 295 Query: 274 attcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacagag 333 ||||| | |||||||||||||| || || |||||||| ||||| ||||||||||| || Sbjct: 296 attcactacatggcaccaaacatttactgttgtggtgcaggaaccgctgctgacactgaa 355 Query: 334 gctgtgacagatatggtcagctcccagct 362 || || || |||||||||||||| ||||| Sbjct: 356 gcagtaactgatatggtcagctcacagct 384 Score = 60.0 bits (30), Expect = 9e-06 Identities = 120/150 (80%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 ||||||||| |||||| ||||||||||| ||||| ||||| ||| | || || || || Sbjct: 463 ctaccaaggccatgtctcagctgctcttgtgcttggtggagttgatattaccgggcctca 522 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| ||||| | || || || || || || || ||||| || ||||| || |||||||| Sbjct: 523 tcttcacacgatatacccacacggttctactgacactctaccatttgctacaatgggttc 582 Query: 561 tggatcccttgctgcgatgtcagtgtttga 590 ||| |||||||||| |||||||||||||| Sbjct: 583 tggttcccttgctgtcatgtcagtgtttga 612
>gb|AY087750.1| Arabidopsis thaliana clone 38185 mRNA, complete sequence Length = 1176 Score = 97.6 bits (49), Expect = 4e-17 Identities = 124/149 (83%) Strand = Plus / Plus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| || |||||||||||||| ||||| Sbjct: 306 cttggggctgatacacgggcaactgaagggcctattgtggctgataagaactgtgagaag 365 Query: 274 attcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacagag 333 ||||| | |||||||||||||| || || |||||||| ||||| ||||||||||| || Sbjct: 366 attcactacatggcaccaaacatttactgttgtggtgcaggaaccgctgctgacactgaa 425 Query: 334 gctgtgacagatatggtcagctcccagct 362 || || || |||||||||||||| ||||| Sbjct: 426 gcagtaactgatatggtcagctcacagct 454 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 ||||||||| |||||| ||||||||||| ||||| ||||| ||| | || || || || Sbjct: 533 ctaccaaggccatgtctcagctgctcttgtgcttggtggagttgatattaccgggcctca 592 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| ||||| | || || || || || || || ||||| || ||||| || |||||||| Sbjct: 593 tcttcacacgatatacccacacggttctactgacactctaccatttgctacaatgggttc 652 Query: 561 tggatcccttgctgcgatgtcagtgtttga 590 ||| ||||||||||| |||||||||||||| Sbjct: 653 tggttcccttgctgccatgtcagtgtttga 682
>gb|AF043531.1|AF043531 Arabidopsis thaliana 20S proteasome beta subunit PBB2 (PBB2) mRNA, complete cds Length = 1085 Score = 97.6 bits (49), Expect = 4e-17 Identities = 124/149 (83%) Strand = Plus / Plus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| || |||||||||||||| ||||| Sbjct: 197 cttggggctgatacacgggcaactgaagggcctattgtggctgataagaactgtgagaag 256 Query: 274 attcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacagag 333 ||||| | |||||||||||||| || || |||||||| ||||| ||||||||||| || Sbjct: 257 attcactacatggcaccaaacatttactgttgtggtgcaggaaccgctgctgacactgaa 316 Query: 334 gctgtgacagatatggtcagctcccagct 362 || || || |||||||||||||| ||||| Sbjct: 317 gcagtaactgatatggtcagctcacagct 345 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 ||||||||| |||||| ||||||||||| ||||| ||||| ||| | || || || || Sbjct: 424 ctaccaaggccatgtctcagctgctcttgtgcttggtggagttgatattaccgggcctca 483 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| ||||| | || || || || || || || ||||| || ||||| || |||||||| Sbjct: 484 tcttcacacgatatacccacacggttctactgacactctaccatttgctacaatgggttc 543 Query: 561 tggatcccttgctgcgatgtcagtgtttga 590 ||| ||||||||||| |||||||||||||| Sbjct: 544 tggttcccttgctgccatgtcagtgtttga 573
>emb|Y13177.1|ATY13177 Arabidopsis thaliana mRNA for proteasome subunit prcfc Length = 866 Score = 93.7 bits (47), Expect = 6e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 244 cctatagttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgc 303 ||||| || |||||||||||||| ||||| ||||| | |||||||||||||| || || Sbjct: 19 cctattgtggctgataagaactgtgagaagattcactacatggcaccaaacatttactgt 78 Query: 304 tgtggtgctggaactgctgctgacacagaggctgtgacagatatggtcagctcccagct 362 |||||||| ||||| ||||||||||| || || || || |||||||||||||| ||||| Sbjct: 79 tgtggtgcaggaaccgctgctgacactgaagcagtaactgatatggtcagctcacagct 137 Score = 67.9 bits (34), Expect = 4e-08 Identities = 121/150 (80%) Strand = Plus / Plus Query: 441 ctaccaaggtcatgtcagtgctgctcttgttcttggcggagtagatgtcactggaccaca 500 ||||||||| |||||| ||||||||||| ||||| ||||| ||| | || || || || Sbjct: 216 ctaccaaggccatgtctcagctgctcttgtgcttggtggagttgatattaccgggcctca 275 Query: 501 tctacacactgtttatccgcatggctccaccgatactcttccttttgccacgatgggttc 560 ||| ||||| | || || || || || || || ||||| || ||||| || |||||||| Sbjct: 276 tcttcacacgatatacccacacggttctactgacactctaccatttgctacaatgggttc 335 Query: 561 tggatcccttgctgcgatgtcagtgtttga 590 ||| ||||||||||| |||||||||||||| Sbjct: 336 tggttcccttgctgccatgtcagtgtttga 365
>gb|BT014192.1| Lycopersicon esculentum clone 133369R, mRNA sequence Length = 1214 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Plus Query: 212 ttcttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgaga 271 ||||||| ||||||||| | || || || || || || ||||||||||||||||| |||| Sbjct: 256 ttcttggagcagacacacgagccactgaaggaccgattgttgctgataagaactgtgaga 315 Query: 272 aaattcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacacag 331 | ||||||| ||||| | ||||||||||||||||| || ||||| |||||||| || | Sbjct: 316 agattcattacatggcccataacatatattgctgtggagcaggaacagctgctgatactg 375 Query: 332 aggctgtgacagatatggtcagctccca 359 |||| || || || |||||||| ||||| Sbjct: 376 aggcagtaactgacatggtcagttccca 403
>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13 Length = 85992 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| || |||||||||||||| ||||| Sbjct: 24628 cttggggctgatacacgggcaactgaagggcctattgtggctgataagaactgtgagaag 24569 Query: 274 attcattttatggcaccaaacatatattgctgtggtgctggaactgctgctgacac 329 ||||| | |||||||||||||| || || |||||||| ||||| ||||||||||| Sbjct: 24568 attcactacatggcaccaaacatttactgttgtggtgcaggaaccgctgctgacac 24513 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 535 actcttccttttgccacgatgggttctggatcccttgctgcgatgtcagtgtttga 590 ||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 24002 actctaccatttgctacaatgggttctggttcccttgctgccatgtcagtgtttga 23947
>emb|AJ291736.1|NTA291736 Nicotiana tabacum mRNA for putative beta proteasome subunit (b2 gene) Length = 870 Score = 75.8 bits (38), Expect = 2e-10 Identities = 131/162 (80%) Strand = Plus / Plus Query: 201 ggatggagttgttcttggggcagacacaagggcgaccgagggtcctatagttgctgataa 260 |||||| ||| | ||||| || |||||| |||| || || || || || ||||| ||||| Sbjct: 195 ggatggtgttatccttggagccgacacacgggcaactgaagggccaattgttgccgataa 254 Query: 261 gaactgcgagaaaattcattttatggcaccaaacatatattgctgtggtgctggaactgc 320 ||||| ||||||||||||| ||||| || || ||||||||||| || ||||| || || Sbjct: 255 aaactgtgagaaaattcattacatggctcctaatatatattgctgcggagctgggacagc 314 Query: 321 tgctgacacagaggctgtgacagatatggtcagctcccagct 362 ||| || |||||||| || || || |||||||| |||||||| Sbjct: 315 tgcggatacagaggcggttactgacatggtcagttcccagct 356
>gb|AC006067.4| Arabidopsis thaliana chromosome 2 clone T13P21 map mi398, complete sequence Length = 126337 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 214 cttggggcagacacaagggcgaccgagggtcctatagttgctgataagaactgcgagaaa 273 |||||||| || ||| |||| || || || ||||| ||||||||||||||||| | ||| Sbjct: 73800 cttggggctgatacacgggcaactgaagggcctattgttgctgataagaactgtgggaag 73859 Query: 274 attcattttatggcaccaaacat 296 ||||| | |||||||||||||| Sbjct: 73860 attcactacatggcaccaaacat 73882
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Minus Query: 301 tgctgtggtgctggaactgctgctgacacagag 333 |||||||||||||| |||||||| ||||||||| Sbjct: 1118893 tgctgtggtgctggtactgctgccgacacagag 1118861
>ref|XM_391905.2| PREDICTED: Apis mellifera similar to CG3329-PA (LOC408353), mRNA Length = 1474 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctga 326 ||||| ||||||||||||||||||||||| Sbjct: 285 tattgttgtggtgctggaactgctgctga 313
>ref|XM_569684.1| Cryptococcus neoformans var. neoformans JEC21 proteasome subunit, beta type, 7 (CNC03530) partial mRNA Length = 1067 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 301 tgctgtggtgctggaactgctgctgacacaga 332 |||||||||||||| |||||||| |||||||| Sbjct: 279 tgctgtggtgctggtactgctgccgacacaga 310
>gb|AY880379.1| Gekko japonicus GekBS148P mRNA, complete cds Length = 1144 Score = 48.1 bits (24), Expect = 0.034 Identities = 66/80 (82%) Strand = Plus / Plus Query: 250 gttgctgataagaactgcgagaaaattcattttatggcaccaaacatatattgctgtggt 309 ||||||||||||||||| ||||| || ||||| | |||||||| ||||| ||||| Sbjct: 367 gttgctgataagaactgttcaaaaatccactttatctctccaaacatctattgttgtgga 426 Query: 310 gctggaactgctgctgacac 329 ||||| |||||||| ||||| Sbjct: 427 gctgggactgctgcagacac 446
>gb|BC033424.1| Mus musculus proteasome (prosome, macropain) subunit, beta type 7, mRNA (cDNA clone IMAGE:5360819), partial cds Length = 960 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 254 tattgctgtggtgctgggacagctgcagacacaga 288
>ref|NM_011187.1| Mus musculus proteasome (prosome, macropain) subunit, beta type 7 (Psmb7), mRNA Length = 969 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 257 tattgctgtggtgctgggacagctgcagacacaga 291
>gb|BC049230.1| Mus musculus proteasome (prosome, macropain) subunit, beta type 7, mRNA (cDNA clone IMAGE:3967580), partial cds Length = 986 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 250 tattgctgtggtgctgggacagctgcagacacaga 284
>ref|NM_053532.1| Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 7 (Psmb7), mRNA Length = 993 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 260 tattgctgtggtgctgggacagctgcagacacaga 294
>emb|Y10874.1|MMMC14 M.musculus mRNA for proteasome subunit MC14 Length = 975 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 271 tattgctgtggtgctgggacagctgcagacacaga 305
>dbj|AK168823.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920058A21 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 947 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 260 tattgctgtggtgctgggacagctgcagacacaga 294
>dbj|AK162002.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720446N17 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 2854 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 276 tattgctgtggtgctgggacagctgcagacacaga 310
>dbj|AK013961.1| Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110001M09 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 972 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 268 tattgctgtggtgctgggacagctgcagacacaga 302
>dbj|AK088765.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430025I23 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 993 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 271 tattgctgtggtgctgggacagctgcagacacaga 305
>dbj|AK088276.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430009J22 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 988 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 268 tattgctgtggtgctgggacagctgcagacacaga 302
>dbj|AK031913.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330443K10 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 985 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 273 tattgctgtggtgctgggacagctgcagacacaga 307
>dbj|AK002823.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610039B05 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 971 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 272 tattgctgtggtgctgggacagctgcagacacaga 306
>dbj|AK012613.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700095J12 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 969 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 258 tattgctgtggtgctgggacagctgcagacacaga 292
>dbj|AK075759.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700028C04 product:proteasome (prosome, macropain) subunit, beta type 7, full insert sequence Length = 985 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 273 tattgctgtggtgctgggacagctgcagacacaga 307
>dbj|D83585.1| Mus musculus Psmb7 mRNA for proteasome Z subunit precursor, complete cds Length = 969 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 257 tattgctgtggtgctgggacagctgcagacacaga 291
>gb|AF285103.1|AF285103 Rattus norvegicus proteasome z subunit mRNA, complete cds Length = 993 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 260 tattgctgtggtgctgggacagctgcagacacaga 294
>gb|BC057662.1| Mus musculus proteasome (prosome, macropain) subunit, beta type 7, mRNA (cDNA clone MGC:68156 IMAGE:2865594), complete cds Length = 995 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 258 tattgctgtggtgctgggacagctgcagacacaga 292
>gb|BC060551.1| Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 7, mRNA (cDNA clone MGC:72743 IMAGE:6922407), complete cds Length = 1002 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 298 tattgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||||| || ||||| |||||||| Sbjct: 270 tattgctgtggtgctgggacagctgcagacacaga 304
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 465 tcttgttcttggcggagtagat 486 |||||||||||||||||||||| Sbjct: 1713112 tcttgttcttggcggagtagat 1713091
>ref|NM_001032780.1| Ciona intestinalis proteasome Z subunit (zeta), mRNA Length = 1231 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 445 caaggtcatgtcagtgctgctcttgttcttggcggagtagat 486 ||||||||||||||||||||| | || || || ||||||||| Sbjct: 460 caaggtcatgtcagtgctgctttggtgctgggaggagtagat 501
>ref|XM_570084.1| Cryptococcus neoformans var. neoformans JEC21 phosphatidyl-N-methylethanolamine N-methyltransferase (CND06200) partial mRNA Length = 948 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 465 tcttgttcttggcggagtagat 486 |||||||||||||||||||||| Sbjct: 670 tcttgttcttggcggagtagat 649
>ref|XM_816542.1| Trypanosoma cruzi strain CL Brener proteasome beta 2 subunit (Tc00.1047053508461.430) partial mRNA Length = 909 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 301 tgctgtggtgctggaactgctgctgacacagaggctgtgaca 342 ||||||||||| ||||| || ||||| || |||||||||||| Sbjct: 355 tgctgtggtgcaggaacggcggctgatacggaggctgtgaca 396
>emb|AJ002142.1|CIRNAPZS Ciona intestinalis mRNA for proteasome Z subunit Length = 1231 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 445 caaggtcatgtcagtgctgctcttgttcttggcggagtagat 486 ||||||||||||||||||||| | || || || ||||||||| Sbjct: 460 caaggtcatgtcagtgctgctttggtgctgggaggagtagat 501
>dbj|AK174283.1| Ciona intestinalis cDNA, clone:cicl021b24, full insert sequence Length = 1200 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 445 caaggtcatgtcagtgctgctcttgttcttggcggagtagat 486 ||||||||||||||||||||| | || || || ||||||||| Sbjct: 437 caaggtcatgtcagtgctgctttggtgctgggaggagtagat 478
>dbj|AK173394.1| Ciona intestinalis cDNA, clone:cilv021p14, full insert sequence Length = 1197 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 445 caaggtcatgtcagtgctgctcttgttcttggcggagtagat 486 ||||||||||||||||||||| | || || || ||||||||| Sbjct: 436 caaggtcatgtcagtgctgctttggtgctgggaggagtagat 477
>gb|AY626811.1| Gekko japonicus BS001P (BS001) mRNA, complete cds Length = 1014 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 292 aacatatattgctgtggtgctggaactgctgctgacacaga 332 ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 272 aacatttattgttgtggtgctgggacagctgcggacacaga 312
>ref|XM_419843.1| PREDICTED: Gallus gallus similar to mRNA capping enzyme (LOC421819), mRNA Length = 3106 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 569 ttgctgcgatgtcagtgtttg 589 ||||||||||||||||||||| Sbjct: 539 ttgctgcgatgtcagtgtttg 559
>gb|AY641847.1| Gekko japonicus GekBS026P mRNA, complete cds Length = 926 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 292 aacatatattgctgtggtgctggaactgctgctgacacaga 332 ||||| ||||| ||||||||||| || ||||| |||||||| Sbjct: 210 aacatttattgttgtggtgctgggacagctgcggacacaga 250
>ref|XM_975638.1| PREDICTED: Mus musculus interferon dependent positive acting transcription factor 3 gamma (Isgf3g), mRNA Length = 1408 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 78 tggtgctggaactgctgctga 58
>emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chromosome 14, complete sequence Length = 160805 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 37444 tggtgctggaactgctgctga 37424
>ref|XM_744529.1| Aspergillus fumigatus Af293 proteasome component Pup1 (Afu2g04910) partial mRNA Length = 819 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 241 ggtcctatagttgctgataagaactgcgagaaa 273 ||||||||||| || || ||||||||||||||| Sbjct: 154 ggtcctatagtcgcagacaagaactgcgagaaa 186
>gb|AY283085.1| Mus musculus putative Ariadne-like ubiquitin ligase PAUL mRNA, complete cds Length = 3282 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 3267 tggtgctggaactgctgctga 3247
>dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, complete cds Length = 34849 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 31684 tggtgctggaactgctgctga 31664
>dbj|AK156320.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830016G16 product:ring finger protein 31, full insert sequence Length = 3466 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 3441 tggtgctggaactgctgctga 3421
>dbj|D85570.2| Mus musculus PSMB7 gene for proteasome subunit Z, complete cds Length = 3847 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 300 ttgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||| || ||||| |||||||| Sbjct: 1879 ttgctgtggtgctgggacagctgcagacacaga 1911
>ref|XM_344409.2| PREDICTED: Rattus norvegicus ring finger protein 31 (predicted) (Rnf31_predicted), mRNA Length = 3437 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 3421 tggtgctggaactgctgctga 3401
>dbj|AK214637.1| Mus musculus cDNA, clone:Y2G0132H05, strand:unspecified Length = 85 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 34 tggtgctggaactgctgctga 54
>emb|AL844842.29| Mouse DNA sequence from clone RP23-354G20 on chromosome 2, complete sequence Length = 228433 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 300 ttgctgtggtgctggaactgctgctgacacaga 332 ||||||||||||||| || ||||| |||||||| Sbjct: 47819 ttgctgtggtgctgggacagctgcagacacaga 47787
>dbj|AK131160.1| Mus musculus premature mRNA for mFLJ00217 protein Length = 4939 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 4917 tggtgctggaactgctgctga 4897
>gb|BC057595.1| Mus musculus ring finger protein 31, mRNA (cDNA clone MGC:67171 IMAGE:6811051), complete cds Length = 3443 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 3358 tggtgctggaactgctgctga 3338
>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence Length = 224638 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 57517 tggtgctggaactgctgctga 57537
>ref|NM_194346.2| Mus musculus ring finger protein 31 (Rnf31), mRNA Length = 3443 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctga 326 ||||||||||||||||||||| Sbjct: 3358 tggtgctggaactgctgctga 3338
>gb|AC166653.5| Mus musculus BAC clone RP24-84J23 from chromosome 14, complete sequence Length = 223142 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 gctgtggtgctggaactgctgctg 325 ||||||| |||||||||||||||| Sbjct: 9070 gctgtggggctggaactgctgctg 9047
>gb|AC166822.3| Mus musculus BAC clone RP24-117F20 from chromosome 14, complete sequence Length = 186860 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 gctgtggtgctggaactgctgctg 325 ||||||| |||||||||||||||| Sbjct: 101768 gctgtggggctggaactgctgctg 101745
>ref|XM_451099.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A02233g predicted mRNA Length = 789 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 306 tggtgctggaactgctgctgacacagaggctgtgac 341 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 222 tggtgctggtactgccgctgataccgaggctgtgac 257
>ref|XM_548226.2| PREDICTED: Canis familiaris similar to vascular endothelial zinc finger 1, transcript variant 1 (LOC491106), mRNA Length = 4525 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 gctgtggtgctggaactgctgctg 325 ||||||||||||| |||||||||| Sbjct: 497 gctgtggtgctggcactgctgctg 474
>emb|CR655048.2|CNS0F4EM Tetraodon nigroviridis full-length cDNA Length = 835 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctg 325 |||||||||||||||||||| Sbjct: 64 tggtgctggaactgctgctg 45
>emb|AL353093.18| Human DNA sequence from clone RP11-224P11 on chromosome 10 Contains a single-stranded DNA binding protein (SSBP1)(SSBP) pseudogene, complete sequence Length = 156008 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 agaaaattcattttatggca 288 |||||||||||||||||||| Sbjct: 116282 agaaaattcattttatggca 116263
>emb|AL121997.7|HSJ1043F6 Human DNA sequence from clone RP5-1043F6 on chromosome 1q42.11-42.3 Contains part of the CHS1 gene for Chediak-Higashi syndrome 1 protein and a lactate dehydrogenase A (LDHA) processed pseudogene, complete sequence Length = 114526 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 tgtggtgctggaactgctgctgac 327 ||||||||||||| |||||||||| Sbjct: 88544 tgtggtgctggaaatgctgctgac 88521
>ref|XM_962112.1| PREDICTED: Tribolium castaneum similar to neuron navigator 2 isoform 2 (LOC655559), mRNA Length = 5778 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 gctgcgatgtcagtgtttga 590 |||||||||||||||||||| Sbjct: 3712 gctgcgatgtcagtgtttga 3693
>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1062590 Score = 40.1 bits (20), Expect = 8.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 306 tggtgctggaactgctgctgacacagaggctgtgac 341 ||||||||| ||||| ||||| || ||||||||||| Sbjct: 199333 tggtgctggtactgccgctgataccgaggctgtgac 199298
>gb|AC105130.8| Homo sapiens chromosome 8, clone RP11-357L10, complete sequence Length = 188410 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gtgctggaactgctgctgac 327 |||||||||||||||||||| Sbjct: 50396 gtgctggaactgctgctgac 50377
>gb|AC090333.5| Homo sapiens chromosome 18, clone RP11-843P6, complete sequence Length = 165344 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aactgctgctgacacagagg 334 |||||||||||||||||||| Sbjct: 24037 aactgctgctgacacagagg 24056
>gb|AC009854.9| Homo sapiens chromosome 18, clone RP11-333A13, complete sequence Length = 207293 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 aactgctgctgacacagagg 334 |||||||||||||||||||| Sbjct: 94532 aactgctgctgacacagagg 94513
>gb|AC009334.8| Homo sapiens chromosome 1, clone RP11-45L2, complete sequence Length = 165618 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 304 tgtggtgctggaactgctgctgac 327 ||||||||||||| |||||||||| Sbjct: 64002 tgtggtgctggaaatgctgctgac 63979
>ref|NM_131677.1| Danio rerio proteasome (prosome, macropain) subunit, beta type, 10 (psmb10), mRNA Length = 1049 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 286 gcaccaaacatatattgctgtggtgctggaactgctgctgacac 329 ||||| ||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 269 gcacctaacatatattgttgtggagcgggaacagctgcggacac 312
>gb|AC155845.3| Mus musculus 6 BAC RP24-399D24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145877 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 atgtcagtgctgctcttgtt 471 |||||||||||||||||||| Sbjct: 104221 atgtcagtgctgctcttgtt 104202
>gb|BC092899.1| Danio rerio proteasome (prosome, macropain) subunit, beta type, 10, mRNA (cDNA clone MGC:110363 IMAGE:7404411), complete cds Length = 1049 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 286 gcaccaaacatatattgctgtggtgctggaactgctgctgacac 329 ||||| ||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 269 gcacctaacatatattgttgtggagcgggaacagctgcggacac 312
>gb|AF155577.1|AF155577 Danio rerio proteasome subunit beta 12 (PSMB12) mRNA, partial cds Length = 1021 Score = 40.1 bits (20), Expect = 8.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 286 gcaccaaacatatattgctgtggtgctggaactgctgctgacac 329 ||||| ||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 240 gcacctaacatatattgttgtggagcgggaacagctgcggacac 283
>gb|BC098835.1| Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 10, mRNA (cDNA clone MGC:112890 IMAGE:7378841), complete cds Length = 1021 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 166 aagaccgggactaccatcgtcggtctcgtgtt 197 ||||||||||||||||||| ||| || ||||| Sbjct: 223 aagaccgggactaccatcgccggacttgtgtt 254
>gb|AF064601.1|AF064601 Xenopus laevis homeobox protein (Vax1) mRNA, complete cds Length = 888 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tgctgctcttgttcttggcg 478 |||||||||||||||||||| Sbjct: 190 tgctgctcttgttcttggcg 171
>ref|NM_001025637.1| Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 10 (Psmb10), mRNA Length = 1021 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 166 aagaccgggactaccatcgtcggtctcgtgtt 197 ||||||||||||||||||| ||| || ||||| Sbjct: 223 aagaccgggactaccatcgccggacttgtgtt 254 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,342,960 Number of Sequences: 3902068 Number of extensions: 4342960 Number of successful extensions: 80830 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 80604 Number of HSP's gapped (non-prelim): 225 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
